genome.fa.s667.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  21  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4797132--4797166	16	2.2	16	94	0	61	60	11	2	25	1.45
4797145--4797325	20	9.1	20	71	16	117	56	10	3	28	1.50
4797110--4797330	40	5.7	40	80	7	235	56	10	3	29	1.50
4797265--4797379	19	6.2	18	71	16	74	57	13	6	22	1.59
4797275--4797389	37	3.1	36	85	7	151	53	16	6	23	1.65
4797508--4797543	19	1.9	18	94	5	63	72	5	5	16	1.23
4797935--4797990	23	2.4	23	93	0	94	17	0	12	69	1.18
4800227--4800253	10	2.7	10	100	0	54	40	29	11	18	1.85
4805910--4805951	11	3.8	11	87	0	66	19	0	28	52	1.46
4805909--4805951	22	2.0	22	95	0	77	20	0	27	51	1.48
4805976--4806132	52	3.0	52	88	1	235	41	8	23	26	1.83
4806616--4806684	31	2.2	31	89	0	111	30	24	20	24	1.99
4808618--4808644	14	1.9	14	100	0	54	14	0	7	77	0.97
4815265--4815537	143	1.9	142	80	8	322	36	13	12	36	1.83
4815293--4815565	143	1.9	142	84	5	363	35	12	13	38	1.83
4815707--4815765	13	4.2	13	72	19	55	16	0	5	77	0.93
4821304--4821374	20	3.6	20	76	17	76	77	0	16	5	0.95
4822561--4822625	21	3.0	21	84	4	94	35	7	16	40	1.78
4822561--4822626	22	3.0	22	86	2	98	34	7	16	40	1.77
4822590--4822652	30	2.1	30	87	0	90	33	11	15	39	1.83
4823190--4823608	42	10.0	42	76	7	291	24	14	17	42	1.87
4823215--4823608	83	4.7	83	75	7	291	24	14	18	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4824154--4824190	14	2.7	14	91	4	58	64	16	8	10	1.47
4825051--4825080	15	2.0	15	93	0	51	83	0	3	13	0.77
4833231--4833302	32	2.3	32	92	2	119	41	19	0	38	1.52
4839053--4839097	22	2.0	22	100	0	90	37	22	17	22	1.94
4839586--4839619	13	2.8	12	82	8	50	64	14	8	11	1.49
4841932--4841963	2	16.0	2	100	0	64	50	0	50	0	1.00
4844188--4844258	32	2.2	32	84	0	97	47	0	2	49	1.16
4849813--4850216	201	2.0	201	91	2	652	27	14	14	42	1.86
4851034--4851106	21	3.5	21	92	5	114	31	24	30	13	1.94
4852502--4852549	21	2.3	20	79	13	53	43	0	16	39	1.48
4861141--4861190	21	2.3	21	79	3	55	78	6	12	4	1.08
4863927--4864014	23	3.8	23	80	8	81	43	7	6	42	1.60
4865135--4865159	12	2.1	12	100	0	50	8	8	0	84	0.79
4865135--4865214	39	2.0	39	83	11	101	12	18	0	68	1.20
4865478--4865506	10	2.7	11	94	5	51	20	27	0	51	1.47
4865503--4865562	16	3.6	16	79	14	68	8	18	0	73	1.08
4865495--4865553	18	3.2	18	79	15	68	11	20	0	67	1.21
4866681--4867069	145	2.7	142	77	5	404	32	15	12	39	1.85
4869841--4869894	25	2.2	24	80	6	65	33	0	1	64	1.04
4869850--4869908	25	2.4	25	82	5	66	40	1	1	55	1.20
4870864--4870894	4	7.8	4	92	0	53	77	19	0	3	0.90
4872966--4873035	31	2.3	31	82	5	79	55	20	7	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4873516--4874387	44	20.0	44	75	7	573	45	15	13	25	1.83
4873516--4873830	131	2.4	132	78	5	350	45	15	13	26	1.83
4873814--4873877	31	2.1	31	90	0	101	53	12	7	26	1.66
4873879--4874394	128	4.0	125	75	9	364	44	15	14	25	1.84
4873869--4874387	171	3.0	172	82	6	574	45	14	14	25	1.83
4875068--4875261	79	2.5	79	80	9	218	30	26	9	33	1.89
4875840--4875948	8	13.1	8	72	18	64	3	19	1	75	1.05
4875842--4875984	17	8.6	16	67	21	62	6	16	1	75	1.08
4875837--4875946	34	3.3	34	78	19	90	4	18	1	75	1.06
4875908--4875946	18	2.2	18	85	0	51	0	15	2	82	0.79
4875868--4875965	26	3.8	25	75	14	83	5	16	1	77	1.00
4876718--4876760	18	2.4	18	96	0	77	34	18	6	39	1.78
4880500--4880554	25	2.2	25	80	9	58	40	7	5	47	1.54
4885638--4885681	17	2.6	17	81	0	52	84	6	4	4	0.88
4886847--4887097	87	2.9	87	91	0	394	37	22	12	27	1.90
4887052--4887113	29	2.1	29	96	0	115	50	22	6	20	1.71
4887052--4887125	29	2.6	29	91	0	103	45	22	6	24	1.76
4887923--4888231	82	3.7	83	82	5	331	35	12	12	38	1.82
4887923--4888231	168	1.8	167	82	3	397	35	12	12	38	1.82
4887929--4888231	84	3.6	82	80	6	324	34	13	12	39	1.83
4888921--4889456	145	3.7	143	80	7	525	34	15	10	39	1.81
4892060--4892084	10	2.5	10	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4896203--4896250	25	1.9	25	83	8	62	60	6	18	14	1.55
4899676--4899704	15	1.9	15	100	0	58	41	27	0	31	1.56
4903371--4903402	16	2.0	16	93	0	55	28	0	12	59	1.34
4908875--4908993	7	18.5	6	72	13	53	43	34	3	18	1.67
4908896--4909011	13	8.8	13	68	18	55	44	33	3	18	1.66
4908891--4909011	51	2.3	52	81	9	140	45	33	3	18	1.65
4909595--4909643	25	1.9	26	87	4	73	48	4	8	38	1.52
4909582--4909643	25	2.5	26	78	5	65	54	4	6	33	1.47
4910153--4910187	9	4.0	9	85	7	54	68	0	11	20	1.20
4911159--4911193	12	2.9	12	88	12	54	17	14	0	68	1.21
4911194--4911339	38	3.9	38	78	3	152	40	23	8	28	1.83
4911194--4911447	37	6.8	38	75	6	162	38	23	7	30	1.83
4911720--4911756	2	18.5	2	88	0	56	56	0	43	0	0.99
4911790--4911818	14	2.1	14	100	0	58	86	0	13	0	0.58
4911790--4911824	13	2.7	13	91	8	54	85	0	14	0	0.59
4912670--4912720	22	2.2	23	86	6	68	33	3	3	58	1.35
4912671--4912741	22	3.3	21	66	26	51	33	4	5	56	1.42
4913023--4913089	21	3.2	21	68	16	57	37	7	2	52	1.45
4912457--4913145	345	2.0	344	85	6	912	35	10	6	47	1.64
4920280--4920314	17	2.1	17	88	0	52	0	17	2	80	0.84
4920346--4920382	15	2.4	16	86	13	51	2	27	0	70	1.01
4920324--4920381	11	5.2	11	74	24	50	1	25	0	72	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4920679--4920890	110	1.9	110	89	2	329	32	32	4	30	1.77
4923362--4923397	19	1.9	19	94	5	65	41	8	0	50	1.33
4925389--4925448	25	2.4	25	91	2	95	45	1	3	50	1.28
4925773--4925824	18	2.9	17	75	8	59	53	3	0	42	1.19
4926131--4926189	27	2.3	26	80	13	68	54	0	0	45	0.99
4926134--4926185	27	1.9	27	84	7	70	53	0	0	46	1.00
4926136--4926207	22	3.2	22	75	13	58	50	0	2	47	1.15
4933657--4933920	98	2.6	99	75	10	279	41	10	5	42	1.62
4937715--4937783	30	2.3	30	81	13	81	36	8	4	50	1.53
4938173--4938224	19	2.7	19	90	3	86	15	1	40	42	1.58
4938238--4938348	13	8.8	12	69	17	73	22	0	32	45	1.53
4938238--4938348	6	17.5	6	72	16	73	22	0	32	45	1.53
4938257--4938348	19	4.7	19	75	11	80	21	0	32	45	1.52
4939190--4939387	67	2.9	68	86	10	257	36	5	5	52	1.47
4939377--4939420	14	3.2	14	83	3	54	65	2	2	29	1.16
4940402--4940485	43	2.0	43	83	2	107	46	20	5	27	1.73
4940291--4940681	195	2.0	196	99	0	775	36	19	11	31	1.88
4940596--4940942	42	8.1	43	83	3	382	43	20	12	24	1.85
4940596--4940942	87	4.1	85	79	5	371	43	20	12	24	1.85
4941884--4941922	8	4.8	8	81	6	51	20	2	2	74	1.06
4942192--4942243	14	3.5	14	73	14	50	42	15	3	38	1.65
4942432--4942514	21	3.9	21	84	7	105	39	14	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4942851--4942894	23	1.9	23	86	9	63	27	25	4	43	1.74
4943676--4943722	9	5.6	8	79	16	51	14	12	0	72	1.13
4943682--4943721	18	2.2	18	90	0	62	15	10	0	75	1.05
4944072--4944110	18	2.2	18	90	9	62	0	12	5	82	0.83
4948182--4948220	17	2.3	17	91	8	62	12	5	2	79	1.00
4948439--4948500	12	5.4	11	75	16	54	75	8	3	12	1.14
4948439--4948500	24	2.7	22	78	11	70	75	8	3	12	1.14
4948733--4948781	15	3.3	15	80	2	55	0	40	0	59	0.98
4948996--4949025	13	2.4	13	94	5	53	63	13	0	23	1.29
4950619--4950921	143	2.1	141	81	7	333	40	14	12	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126