genome.fa.s667.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  80  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16234219--16234253	11	3.1	11	88	8	52	2	17	54	25	1.57
16234294--16234350	14	4.3	14	82	8	66	33	0	0	66	0.92
16234302--16234345	13	3.1	16	75	24	53	36	0	0	63	0.95
16237498--16237539	21	2.0	21	86	9	59	57	4	0	38	1.20
16239720--16239765	23	2.0	23	87	8	67	58	0	4	36	1.18
16248432--16248559	63	2.0	63	82	4	152	45	15	14	25	1.83
16250211--16250240	9	3.4	9	90	9	53	43	10	0	46	1.37
16250271--16250303	14	2.4	14	90	10	50	51	0	0	48	1.00
16251334--16251381	22	2.2	22	88	0	69	27	0	8	64	1.22
16252759--16252796	7	5.3	7	90	6	58	52	15	0	31	1.43
16253136--16253202	30	2.2	30	84	5	82	47	1	7	43	1.40
16253276--16253321	23	2.0	23	95	4	85	47	0	4	47	1.21
16254808--16254849	22	2.0	22	90	9	70	30	9	14	45	1.77
16254989--16255053	25	2.6	25	100	0	130	16	29	20	33	1.95
16255224--16255258	18	1.9	18	88	0	52	22	14	25	37	1.92
16258689--16258732	22	2.0	22	95	0	79	31	11	13	43	1.80
16268998--16269047	16	3.0	16	81	18	50	54	4	0	42	1.19
16269661--16269703	21	2.0	21	86	8	61	46	0	0	53	1.00
16271828--16271865	15	2.5	16	83	8	53	31	0	5	63	1.17
16274239--16274279	15	2.8	15	82	13	50	36	4	0	58	1.20
16274955--16274990	17	2.2	16	90	5	54	61	2	8	27	1.39
16275214--16275314	48	2.1	48	98	0	193	50	5	1	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16275225--16275311	24	3.6	25	72	7	90	45	6	2	44	1.43
16275449--16275481	2	16.5	2	87	12	50	48	0	3	48	1.17
16276008--16276046	18	2.0	20	90	9	64	61	10	5	23	1.48
16277758--16277792	4	8.8	4	93	0	61	0	22	0	77	0.78
16278505--16278561	18	3.1	18	87	7	71	40	8	7	43	1.63
16279660--16279701	22	1.9	22	85	9	59	30	9	0	59	1.29
16280190--16280238	24	2.0	24	84	0	62	40	16	6	36	1.73
16280915--16280974	3	19.7	3	89	3	93	33	1	1	63	1.14
16281004--16281093	37	2.4	37	83	3	99	21	16	23	38	1.92
16285285--16285329	19	2.4	19	88	0	63	73	0	4	22	1.01
16285304--16285334	13	2.4	13	94	0	53	80	0	0	19	0.71
16285338--16285394	30	1.9	30	85	7	80	75	5	7	12	1.17
16285946--16286002	28	2.0	29	83	10	73	31	8	3	56	1.47
16286183--16286227	8	5.3	9	92	7	69	71	0	6	22	1.09
16286177--16286223	4	11.5	4	82	13	60	72	0	4	23	1.02
16286183--16286223	12	3.3	13	90	10	68	73	0	4	21	1.02
16286524--16286590	18	3.8	18	73	9	57	43	7	13	35	1.72
16286567--16286773	86	2.4	85	81	4	216	37	11	16	34	1.84
16286799--16286842	17	2.5	17	81	3	61	29	9	22	38	1.85
16286850--16287020	36	4.8	36	69	9	100	43	11	14	30	1.80
16286962--16286997	17	2.1	17	89	0	54	41	13	13	30	1.84
16287107--16287244	45	3.1	45	80	5	118	42	13	9	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16287122--16287198	22	3.6	21	75	5	73	44	15	6	33	1.72
16287107--16287207	44	2.3	44	82	5	114	42	13	9	33	1.78
16287451--16287499	20	2.5	19	80	9	55	36	20	10	32	1.86
16288929--16288971	17	2.5	17	76	3	50	44	13	2	39	1.57
16304677--16304794	31	3.9	31	87	5	163	50	15	4	29	1.62
16304803--16304860	24	2.5	24	88	2	82	60	5	1	32	1.29
16304803--16304876	24	3.1	24	79	12	66	60	5	1	32	1.27
16304866--16304916	16	3.3	16	75	10	61	52	15	5	25	1.65
16305844--16305971	28	4.5	28	75	13	95	60	3	1	34	1.25
16305890--16305972	36	2.2	37	83	10	107	60	1	2	36	1.18
16305994--16306037	22	2.1	20	83	8	52	72	9	0	18	1.10
16306099--16306189	36	2.6	36	81	5	98	57	3	5	34	1.38
16306398--16306422	12	2.1	12	100	0	50	16	0	8	76	1.02
16306514--16306571	18	3.2	19	69	16	50	29	0	5	65	1.14
16306522--16306576	19	3.0	18	73	19	51	32	0	7	60	1.24
16306576--16306637	9	6.4	9	75	12	52	40	3	3	53	1.33
16306599--16306658	22	2.7	22	85	10	70	38	1	8	51	1.42
16306598--16306637	10	3.9	10	80	6	53	42	0	5	52	1.23
16308125--16308166	21	2.0	21	82	17	52	30	7	0	61	1.22
16310858--16311087	41	5.6	42	77	9	190	37	12	12	37	1.80
16310956--16311106	82	1.8	82	97	0	284	32	11	13	42	1.80
16310974--16311102	41	3.1	41	83	4	188	31	11	12	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16311853--16311886	17	2.0	17	88	0	50	2	11	0	85	0.71
16311852--16311876	9	2.8	9	100	0	50	0	8	0	92	0.40
16312954--16313016	13	4.7	14	72	14	53	3	19	1	76	1.01
16312954--16313004	27	1.9	27	84	4	68	1	17	1	78	0.94
16313495--16313538	10	4.5	10	85	5	63	2	15	0	81	0.78
16313485--16313528	19	2.2	20	88	11	65	4	15	0	79	0.89
16314898--16314991	34	2.9	34	74	13	90	30	4	4	60	1.35
16315015--16315050	16	2.2	16	90	0	54	19	11	8	61	1.54
16315042--16315135	49	1.9	49	82	6	120	32	9	5	52	1.57
16317750--16317778	3	9.7	3	100	0	58	65	0	0	34	0.93
16318699--16318743	20	2.3	19	85	11	56	66	2	2	28	1.15
16319380--16319421	20	2.1	20	86	8	59	21	0	4	73	1.01
16319394--16319430	17	2.2	17	90	0	56	32	0	2	64	1.07
16319901--16319951	20	2.6	19	81	9	50	19	9	21	49	1.77
16320124--16320152	3	9.7	3	100	0	58	31	0	0	68	0.89
16320237--16320265	3	10.0	3	92	7	51	31	0	0	68	0.89
16321686--16321715	16	1.9	15	93	6	51	30	0	0	70	0.88
16322055--16322116	7	9.5	6	78	13	52	1	6	17	74	1.11
16322043--16322089	20	2.3	21	85	10	62	0	6	12	80	0.88
16322058--16322089	7	4.6	7	96	0	55	0	3	12	84	0.74
16339521--16339560	16	2.6	16	84	15	57	60	0	0	40	0.97
16339524--16339560	15	2.5	16	83	16	53	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16339872--16339919	25	2.0	24	84	8	62	54	6	8	31	1.55
16341809--16341873	2	33.0	2	81	3	51	40	3	9	47	1.51
16343218--16343242	2	12.5	2	100	0	50	48	0	0	52	1.00
16343742--16343779	18	2.2	18	95	4	69	42	0	13	44	1.43
16346387--16346435	24	2.0	25	88	4	73	46	0	2	51	1.12
16346570--16346606	19	1.9	19	89	10	58	59	2	0	37	1.12
16346670--16346702	16	2.2	16	89	10	52	63	0	0	36	0.95
16347353--16347386	2	17.0	2	100	0	68	50	0	50	0	1.00
16348025--16348186	80	2.0	80	98	0	315	25	19	24	31	1.98
16348445--16348475	16	1.9	16	93	0	53	32	0	9	58	1.31
16351310--16351502	95	2.0	97	96	3	363	44	5	15	34	1.69
16352370--16352520	81	1.9	81	97	0	284	47	10	5	35	1.63
16352386--16352512	38	3.2	38	64	28	93	48	10	4	37	1.58
16361995--16362243	80	3.1	78	86	4	311	25	8	23	42	1.81
16367596--16367847	131	1.9	130	84	6	330	36	12	15	34	1.86
16391199--16391248	16	3.0	16	81	18	50	54	0	2	44	1.11
16391429--16391468	19	2.2	19	90	4	64	40	0	0	60	0.97
16391421--16391477	25	2.2	25	84	6	69	43	0	0	56	0.99
16391892--16391932	18	2.1	20	86	13	59	41	0	0	58	0.98
16391892--16391945	21	2.7	18	80	13	54	44	0	1	53	1.11
16392987--16393035	24	2.0	24	84	0	62	44	16	2	36	1.59
16394628--16394669	22	2.0	21	85	4	57	2	21	9	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16399376--16399417	21	2.0	21	86	9	59	2	21	9	66	1.32
16401453--16401505	4	13.8	4	77	15	58	0	0	18	81	0.70
16401453--16401506	8	7.0	8	81	8	67	0	0	18	81	0.69
16401453--16401499	14	3.2	14	88	8	67	0	0	19	80	0.70
16402687--16402735	16	3.1	16	80	13	57	42	0	0	57	0.99
16402721--16402772	21	2.5	21	93	6	88	50	0	0	50	1.00
16404228--16404261	2	17.0	2	93	0	59	47	2	0	50	1.16
16413280--16413316	16	2.2	17	86	13	51	64	2	5	27	1.28
16415816--16415891	37	2.1	37	94	0	134	34	23	11	30	1.91
16417173--16417224	27	1.9	27	88	0	77	50	7	7	34	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126