genome.fa.s667.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  51  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10167037--10167124	15	5.9	15	72	24	71	72	1	3	22	1.06
10167080--10167128	14	3.5	14	82	17	50	75	0	0	24	0.80
10167036--10167153	20	6.0	20	72	17	79	73	1	3	21	1.06
10167092--10167130	14	2.7	14	88	11	53	79	0	0	20	0.73
10175347--10175439	8	12.2	8	76	21	78	73	0	17	9	1.09
10175361--10175439	9	9.0	9	76	13	67	73	0	17	8	1.08
10175361--10175421	25	2.4	25	89	8	88	72	0	18	9	1.11
10176587--10176914	21	15.2	21	71	8	212	36	6	16	41	1.73
10176587--10176898	66	4.8	62	72	10	173	36	6	16	40	1.74
10176587--10176914	45	7.6	42	73	8	185	36	6	16	41	1.73
10176743--10176800	24	2.5	24	80	5	66	46	5	13	34	1.66
10177227--10177283	16	3.6	16	82	0	78	24	8	19	47	1.77
10177346--10177448	48	2.2	47	87	5	145	40	13	8	36	1.76
10177500--10177588	34	2.6	34	81	0	97	29	15	14	40	1.87
10177643--10177709	23	3.0	23	69	20	61	32	11	13	41	1.81
10178868--10178911	23	2.0	23	90	4	72	22	0	6	70	1.11
10178867--10178917	23	2.4	22	84	12	70	23	0	5	70	1.09
10178865--10178922	27	2.1	27	84	12	75	24	0	6	68	1.13
10180143--10180190	22	2.2	22	81	7	53	29	16	25	29	1.97
10180199--10180264	22	3.0	22	76	10	62	31	21	19	27	1.97
10180200--10180323	66	1.9	66	83	3	160	35	17	17	29	1.93
10180250--10180400	80	1.9	79	81	6	180	34	13	19	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10180417--10180479	23	2.8	23	87	2	83	31	19	20	28	1.97
10182382--10182445	28	2.3	28	100	0	128	45	20	12	21	1.84
10182875--10182931	24	2.4	24	80	13	64	78	8	5	7	1.07
10182876--10182936	25	2.4	24	83	10	68	77	8	6	8	1.14
10183809--10183937	32	4.0	32	73	0	114	10	11	26	51	1.69
10186325--10186390	18	3.9	18	72	22	63	0	21	1	77	0.85
10186328--10186390	25	2.6	25	76	23	62	0	20	1	77	0.85
10186331--10186390	12	4.8	13	74	17	65	0	20	1	78	0.84
10186748--10186785	11	3.4	11	85	7	58	2	7	2	86	0.74
10191546--10191611	23	2.8	24	80	11	66	31	3	1	63	1.19
10191547--10191615	13	5.8	12	72	16	54	30	2	1	65	1.16
10191673--10191721	22	2.2	23	85	10	66	75	6	2	16	1.09
10191668--10191757	32	2.7	31	81	8	99	75	6	2	15	1.11
10193516--10193553	16	2.4	16	100	0	76	42	15	21	21	1.89
10197425--10197462	18	2.2	17	90	4	58	5	15	0	78	0.91
10198150--10198192	21	2.0	21	86	0	59	20	20	25	32	1.97
10198178--10198229	22	2.4	22	87	6	70	21	15	23	40	1.91
10198365--10198419	28	2.0	28	81	0	65	43	1	3	50	1.30
10198768--10198807	20	2.0	20	85	5	53	32	25	20	22	1.98
10199431--10199477	4	11.2	4	82	13	51	74	0	0	25	0.82
10199431--10199484	13	4.2	13	80	17	60	72	0	1	25	0.95
10201068--10201108	14	2.7	15	85	14	57	26	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10201077--10201107	7	4.3	7	95	4	53	29	0	0	70	0.87
10201167--10201215	23	2.1	23	96	0	89	46	6	14	32	1.69
10205383--10205436	12	4.5	12	78	15	58	64	1	1	31	1.14
10205394--10205480	19	4.6	19	69	13	54	62	2	3	32	1.25
10205414--10205454	19	2.2	19	86	0	55	68	2	2	26	1.15
10205471--10205521	20	2.8	18	77	11	52	43	0	0	56	0.99
10208366--10208799	204	2.1	204	82	4	527	33	15	16	34	1.91
10209015--10209153	15	8.9	15	69	18	63	26	5	1	66	1.23
10209016--10209051	5	7.2	5	87	12	56	22	0	0	77	0.76
10209102--10209146	21	2.1	21	84	8	56	22	4	0	73	1.01
10210470--10210523	21	2.4	23	87	9	76	70	0	1	27	0.98
10213665--10213701	17	2.1	18	90	5	58	16	5	0	78	0.93
10213722--10213786	10	7.0	9	73	13	60	23	6	1	69	1.20
10213756--10213795	17	2.3	18	86	4	55	20	2	5	72	1.15
10213872--10213919	13	3.8	12	83	10	60	75	2	12	10	1.14
10215124--10215418	55	5.3	52	77	12	259	51	7	7	33	1.58
10215130--10215414	111	2.6	112	78	10	307	51	7	7	33	1.59
10215124--10215418	54	5.3	53	78	11	281	51	7	7	33	1.58
10216519--10216545	13	2.1	13	100	0	54	7	40	7	44	1.60
10218991--10219030	5	7.6	5	89	10	62	20	2	0	77	0.88
10218991--10219030	16	2.5	15	92	8	62	20	2	0	77	0.88
10218991--10219030	11	3.8	10	90	9	62	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10219069--10219145	10	8.3	9	75	12	50	20	7	1	70	1.20
10219242--10219279	18	2.1	18	85	9	51	81	0	10	7	0.87
10220477--10220704	53	4.2	52	77	10	201	53	6	7	32	1.55
10220491--10220707	107	2.0	106	85	6	294	52	6	8	32	1.58
10220491--10220707	54	4.0	53	79	5	238	52	6	8	32	1.58
10220668--10220748	41	2.0	41	85	0	108	48	8	4	38	1.56
10223934--10224026	40	2.3	40	85	3	116	27	11	16	44	1.82
10225461--10225504	10	4.4	10	83	11	54	15	2	2	79	0.93
10225462--10225499	19	2.0	20	89	5	60	15	2	2	78	0.97
10227575--10227762	61	3.2	59	87	6	256	43	6	9	40	1.62
10227575--10227762	59	3.2	60	85	9	251	43	6	9	40	1.62
10227660--10227855	103	1.9	102	87	5	288	44	9	8	37	1.66
10227718--10227809	45	2.0	46	87	8	136	44	9	5	40	1.60
10227763--10227947	58	3.2	58	83	8	218	45	7	10	36	1.66
10227627--10227921	161	1.8	160	85	7	411	44	7	8	38	1.65
10228422--10228547	66	1.9	66	83	3	164	42	3	30	23	1.70
10228730--10228791	18	3.5	17	72	16	54	38	4	27	29	1.77
10236178--10236217	3	13.3	3	100	0	80	65	0	0	35	0.93
10243001--10243065	24	2.7	24	92	0	103	32	24	18	24	1.97
10243444--10243489	23	2.0	23	86	0	65	32	34	2	30	1.70
10249395--10249437	22	1.9	23	85	4	61	34	23	0	41	1.55
10250713--10250783	28	2.4	29	83	6	90	47	1	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250876--10250923	22	2.2	22	85	3	62	45	4	0	50	1.21
10252962--10253000	20	2.0	20	84	0	51	28	7	25	38	1.83
10252986--10253032	20	2.4	19	77	19	51	23	12	21	42	1.87
10257955--10258076	33	3.7	33	74	3	84	50	13	18	18	1.78
10258053--10258138	33	2.6	34	81	3	111	50	12	17	19	1.78
10259216--10259254	19	2.1	19	95	0	69	15	7	0	76	0.99
10260334--10260387	21	2.5	21	81	6	63	48	0	1	50	1.11
10260367--10260401	15	2.2	16	90	10	54	48	2	0	48	1.16
10260588--10260672	37	2.3	37	82	8	93	49	0	3	47	1.18
10265078--10265119	22	1.9	22	85	9	59	16	4	4	73	1.17
10265073--10265120	18	2.7	18	76	0	51	16	4	4	75	1.12
10267880--10267905	3	8.7	3	100	0	52	30	0	0	69	0.89
10268944--10269054	56	2.0	56	85	3	152	25	11	6	56	1.58
10269341--10269389	3	16.3	3	100	0	98	65	0	0	34	0.93
10269388--10269444	3	19.0	3	96	0	105	31	1	0	66	1.02
10269388--10269451	9	7.1	9	96	0	74	29	4	0	65	1.13
10273832--10273869	10	3.6	11	86	6	53	55	7	0	36	1.29
10273872--10273939	9	7.4	9	74	9	50	64	7	1	26	1.28
10273810--10274020	20	11.5	18	71	18	109	58	7	1	32	1.35
10273920--10273960	21	2.0	21	90	0	64	70	2	2	24	1.11
10274211--10274414	9	22.5	8	66	21	57	62	2	2	31	1.25
10274225--10274268	19	2.3	19	92	0	70	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10274211--10274414	18	11.2	17	67	16	81	62	2	2	31	1.25
10274242--10274298	29	2.0	29	76	13	55	52	3	3	40	1.35
10274287--10274373	37	2.4	36	80	1	84	63	4	2	29	1.27
10274441--10274496	19	2.8	20	72	10	51	37	3	3	55	1.35
10274504--10274554	23	2.3	22	83	10	59	27	0	7	64	1.21
10274516--10274540	12	2.1	12	100	0	50	24	0	8	68	1.16
10274583--10274642	30	2.0	31	87	9	88	33	0	5	61	1.17
10274702--10274747	19	2.3	20	88	3	67	34	0	4	60	1.16
10274707--10274747	20	2.1	20	90	4	66	36	0	2	60	1.10
10275507--10275587	41	2.0	41	87	0	117	49	23	7	19	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126