genome.fa.s667.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  75  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15146709--15146848	45	3.1	45	75	11	126	34	17	10	37	1.84
15146720--15146851	22	5.9	22	72	9	97	32	15	11	40	1.83
15146709--15146881	22	7.7	22	70	14	95	33	16	10	39	1.83
15147833--15147909	31	2.5	31	77	12	86	51	7	2	37	1.45
15148191--15148255	26	2.5	26	82	7	78	53	4	4	36	1.42
15148179--15148247	36	2.0	34	88	5	102	52	4	5	37	1.46
15148339--15148376	17	2.1	18	85	9	51	57	5	10	26	1.53
15148562--15148629	18	3.9	17	80	5	82	35	1	2	60	1.21
15149520--15149548	2	14.5	2	100	0	58	0	51	0	48	1.00
15150743--15150820	21	3.6	21	71	10	66	25	11	12	50	1.74
15154973--15155056	42	2.0	42	95	0	150	27	9	21	41	1.84
15161102--15161126	13	1.9	13	100	0	50	56	0	0	44	0.99
15161195--15161245	11	4.4	12	78	7	52	17	56	13	11	1.66
15164991--15165022	2	16.0	2	100	0	64	50	0	0	50	1.00
15165522--15165594	27	2.8	25	81	10	67	75	4	8	12	1.17
15165551--15165602	27	1.9	27	88	0	77	73	1	9	15	1.18
15165761--15165805	18	2.6	17	82	3	54	4	17	0	77	0.92
15165762--15165821	18	3.3	18	79	11	52	5	16	1	76	1.04
15169256--15169411	83	1.9	83	84	5	208	49	4	20	25	1.68
15172720--15172774	12	4.5	12	77	4	56	61	0	0	38	0.96
15174471--15174509	16	2.4	16	86	4	51	41	0	7	51	1.31
15174444--15174663	57	3.7	60	84	8	304	33	11	7	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15174701--15174772	13	5.6	13	73	14	60	79	1	5	13	0.98
15174692--15174750	31	2.0	29	86	6	82	79	0	6	13	0.92
15174705--15174772	18	3.7	18	78	9	57	79	1	5	13	0.98
15174725--15174772	16	2.9	16	76	14	53	81	2	4	12	0.93
15174701--15174789	39	2.4	38	83	9	103	77	2	5	14	1.05
15174812--15174843	16	1.9	17	93	6	57	81	3	0	15	0.82
15175733--15175796	23	2.9	22	72	11	60	71	4	3	20	1.17
15175781--15175817	11	3.2	12	77	14	51	64	0	0	35	0.94
15175784--15175833	19	2.6	21	84	15	72	64	2	0	34	1.05
15175779--15175844	25	2.8	25	79	18	70	65	3	0	31	1.08
15175781--15175828	22	2.2	22	85	7	62	62	2	0	35	1.07
15176113--15176178	7	9.7	7	85	8	75	0	1	10	87	0.60
15176113--15176178	1	66.0	1	75	0	60	0	1	10	87	0.60
15176113--15176178	8	8.5	8	83	12	77	0	1	10	87	0.60
15176120--15176178	20	3.1	19	79	15	77	0	1	10	88	0.60
15176107--15176178	36	2.0	37	88	2	110	1	2	9	86	0.74
15176186--15176599	42	10.1	42	86	7	577	37	21	17	23	1.94
15176186--15176599	83	5.1	83	88	5	580	37	21	17	23	1.94
15176502--15176569	34	2.0	33	94	2	118	36	17	19	26	1.94
15176460--15176599	75	1.9	76	90	4	230	37	20	16	26	1.93
15180852--15181090	62	3.9	59	89	6	354	31	11	7	48	1.68
15180852--15181090	121	2.0	122	90	5	378	31	11	7	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15181108--15181170	22	2.8	22	81	11	58	76	3	9	11	1.13
15181576--15181609	11	3.1	11	82	0	50	17	14	44	23	1.86
15182042--15182099	30	1.9	30	86	6	82	70	5	6	17	1.28
15182139--15182185	3	15.3	3	82	8	51	68	0	0	31	0.90
15182143--15182219	22	3.2	23	78	14	77	64	2	0	32	1.07
15182145--15182215	25	2.8	26	81	10	67	63	2	0	33	1.09
15182271--15182323	16	3.3	17	77	17	60	71	5	1	20	1.16
15186188--15186221	2	17.5	2	93	6	61	50	0	0	50	1.00
15187834--15187870	13	2.8	13	87	4	56	64	2	5	27	1.28
15188038--15188083	22	2.1	22	84	8	58	30	8	4	56	1.49
15188567--15188595	1	29.0	1	100	0	58	100	0	0	0	0.00
15194864--15194908	22	2.0	24	82	8	58	60	2	6	31	1.35
15195233--15195267	17	2.1	17	88	0	52	25	8	22	42	1.82
15196078--15196104	2	13.5	2	100	0	54	51	0	0	48	1.00
15196302--15196331	2	15.5	2	93	6	53	53	0	0	46	1.00
15215602--15215768	50	3.4	49	79	6	169	32	10	14	43	1.79
15215622--15215801	50	3.6	49	77	10	161	31	11	15	42	1.82
15217410--15217454	21	2.1	21	83	0	54	68	0	6	24	1.13
15218937--15218961	2	12.5	2	100	0	50	48	0	0	52	1.00
15219654--15219726	37	1.9	37	86	2	101	47	2	2	46	1.31
15220041--15220140	22	4.5	22	68	21	64	38	4	4	54	1.38
15220121--15220170	26	2.0	25	88	4	73	40	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15220116--15220172	26	2.3	24	82	11	71	40	0	1	57	1.09
15223599--15223631	2	16.5	2	100	0	66	51	48	0	0	1.00
15227892--15228192	151	2.0	151	84	5	394	20	31	18	29	1.97
15228044--15228738	372	1.9	371	82	4	882	22	28	20	29	1.98
15231708--15231760	25	2.1	25	96	0	97	28	22	32	16	1.96
15232655--15233848	368	3.2	369	80	5	1227	31	19	25	23	1.98
15236053--15236201	76	2.0	72	94	5	262	26	16	26	30	1.97
15237334--15237377	20	2.3	19	92	4	70	31	0	0	68	0.90
15237334--15237379	10	4.7	10	81	5	58	34	0	0	65	0.93
15243798--15243844	23	2.0	23	91	0	76	31	10	8	48	1.68
15244385--15244418	17	2.0	17	88	0	50	23	5	23	47	1.73
15248292--15248350	25	2.3	26	79	8	66	27	6	52	13	1.65
15253158--15253221	28	2.2	31	83	8	80	23	4	1	70	1.15
15253201--15253264	24	2.7	23	75	15	67	34	6	1	57	1.33
15253201--15253269	25	2.8	25	77	14	72	34	5	1	57	1.31
15255185--15255218	9	3.8	9	92	0	59	61	0	0	38	0.96
15255686--15255735	20	2.5	21	93	6	86	50	0	0	50	1.00
15255720--15255771	14	3.6	14	75	10	50	57	0	0	42	0.98
15255723--15255761	16	2.4	16	86	0	51	61	0	0	38	0.96
15255709--15255779	30	2.4	30	83	6	83	56	0	0	43	0.99
15256093--15256150	24	2.4	24	85	2	80	48	0	6	44	1.29
15260165--15260234	13	5.6	13	76	10	65	35	1	0	62	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15260539--15260588	19	2.4	21	80	12	59	48	0	6	46	1.27
15263394--15263444	22	2.3	23	83	10	70	60	1	0	37	1.08
15263811--15263856	10	4.7	10	76	12	51	34	0	0	65	0.93
15263811--15263855	20	2.3	19	85	7	63	33	0	0	66	0.92
15264043--15264128	25	3.1	28	75	13	70	31	2	3	62	1.24
15265493--15265542	14	3.5	14	73	21	50	66	0	2	32	1.03
15265474--15265548	29	2.6	29	89	2	105	56	1	5	37	1.31
15266629--15266763	68	2.0	68	89	2	209	22	25	11	40	1.88
15266797--15266822	1	26.0	1	100	0	52	0	0	0	100	0.00
15267149--15267175	13	2.1	13	100	0	54	33	7	0	59	1.25
15272097--15272143	2	23.5	2	95	0	85	46	0	0	53	1.00
15274743--15275145	188	2.1	189	86	3	555	33	16	30	20	1.94
15275833--15275921	45	2.0	45	88	0	133	30	24	11	33	1.90
15276136--15276172	17	2.1	18	90	5	58	48	5	8	37	1.56
15277087--15277184	42	2.3	41	89	5	151	48	13	7	30	1.69
15279292--15279336	21	2.1	21	88	12	65	46	4	2	46	1.35
15280759--15280805	13	3.8	12	77	11	51	34	0	2	63	1.06
15280762--15280818	24	2.3	27	85	11	77	36	3	1	57	1.26
15287335--15287368	3	11.3	3	100	0	68	67	0	0	32	0.91
15301866--15301994	67	1.9	67	95	0	231	38	7	8	44	1.64
15309186--15309227	22	1.9	22	95	0	75	35	14	21	28	1.92
15310424--15310451	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15319006--15319059	27	2.0	27	100	0	108	55	7	14	22	1.64
15323839--15323893	23	2.3	24	87	6	76	60	0	0	40	0.97
15325063--15325103	18	2.3	18	86	0	64	24	0	2	73	0.96
15340395--15340465	31	2.2	32	80	7	83	42	2	4	50	1.36
15340616--15340669	29	1.9	29	81	7	67	55	1	0	42	1.10
15341342--15341373	2	16.0	2	100	0	64	50	0	0	50	1.00
15346563--15346628	33	2.1	32	88	5	98	31	12	18	37	1.87
15347095--15347132	17	2.1	19	90	9	62	60	0	0	39	0.97
15347868--15347910	7	6.8	6	82	15	52	76	0	4	18	0.95
15349493--15349539	19	2.5	19	80	16	53	74	4	4	17	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126