genome.fa.s667.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  4  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015372--1015407	17	2.1	18	89	5	56	36	5	2	55	1.38
1017386--1017448	31	2.0	31	87	6	92	42	6	3	47	1.44
1019582--1019794	105	2.0	105	100	0	426	42	9	7	40	1.65
1020348--1020388	21	2.0	20	90	4	64	65	9	4	19	1.40
1022233--1022297	21	3.2	20	78	6	67	40	4	4	50	1.43
1026356--1026425	24	2.9	25	77	10	74	67	1	4	27	1.18
1030233--1030284	27	1.9	27	92	0	86	32	26	19	21	1.97
1031161--1031215	16	3.4	17	80	7	60	61	5	7	25	1.44
1031185--1031215	16	1.9	16	100	0	62	58	6	6	29	1.48
1033240--1033291	27	1.9	27	88	0	77	32	23	21	23	1.98
1034297--1034331	15	2.2	16	90	5	54	60	0	5	34	1.21
1039840--1039883	11	4.0	11	91	5	63	0	6	9	84	0.79
1039840--1039882	16	2.7	15	82	13	50	0	6	6	86	0.72
1040218--1040254	8	4.6	8	89	0	56	13	0	2	83	0.74
1040218--1040260	16	2.7	16	92	0	68	11	0	4	83	0.78
1040073--1040455	203	1.9	201	81	10	460	32	10	7	49	1.65
1041274--1041367	6	15.7	6	74	12	77	76	2	1	20	0.95
1041312--1041342	16	1.9	16	100	0	62	77	0	0	22	0.77
1041275--1041361	30	2.9	29	78	11	86	77	1	1	20	0.91
1041273--1041354	28	3.0	27	78	8	85	78	1	1	19	0.89
1043458--1043503	21	2.2	20	96	3	83	67	4	8	19	1.35
1044546--1044586	21	2.0	21	85	9	57	39	4	7	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044581--1044631	27	1.9	26	84	4	66	35	7	1	54	1.40
1056360--1056411	27	1.9	27	88	0	77	34	26	17	21	1.95
1057419--1057461	17	2.4	18	84	3	61	65	0	6	27	1.18
1059367--1059885	284	1.8	284	85	1	736	21	28	22	27	1.99
1067593--1067644	27	1.9	27	92	0	86	34	28	15	21	1.94
1068811--1068850	19	2.0	20	85	4	55	65	7	2	25	1.32
1069731--1069782	23	2.3	23	96	0	95	61	15	7	15	1.55
1070391--1070845	59	7.7	58	80	7	463	34	12	7	45	1.69
1070540--1070564	13	1.9	13	100	0	50	32	0	4	64	1.12
1070534--1070575	14	2.8	16	75	14	52	45	0	4	50	1.23
1070393--1070845	178	2.6	176	82	7	526	34	12	7	45	1.69
1070391--1070845	119	3.8	118	83	6	573	34	12	7	45	1.69
1070875--1070942	17	4.0	16	74	12	64	76	2	7	13	1.11
1070863--1070941	5	14.8	5	72	17	54	78	2	5	13	1.02
1070863--1070941	11	6.8	11	77	13	70	78	2	5	13	1.02
1070964--1071009	16	2.9	16	80	3	58	78	4	0	17	0.91
1071928--1071961	16	2.1	16	88	0	50	82	0	5	11	0.83
1071964--1072019	3	19.3	3	82	14	73	71	0	1	26	0.96
1071936--1072063	11	11.0	11	75	17	91	74	1	3	21	1.04
1071936--1072062	6	20.7	6	77	13	73	74	1	3	20	1.03
1071935--1072062	7	17.6	7	71	20	61	75	1	3	20	1.03
1078038--1078078	21	2.0	21	85	9	57	39	4	7	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078073--1078123	27	1.9	26	84	4	66	35	5	3	54	1.43
1081526--1081577	27	1.9	27	92	0	86	34	25	19	21	1.96
1095127--1095178	27	1.9	27	92	0	86	21	15	28	34	1.94
1105028--1105062	15	2.2	16	90	5	54	34	5	0	60	1.21
1105025--1105063	15	2.7	15	80	4	53	33	7	0	58	1.26
1109474--1109523	21	2.4	21	83	9	66	48	6	2	44	1.39
1110856--1110907	27	1.9	27	88	0	77	23	21	23	32	1.98
1118002--1118052	27	1.9	26	84	4	66	54	3	5	35	1.43
1118047--1118087	21	2.0	21	85	9	57	48	7	4	39	1.52
1124070--1124204	6	21.7	6	78	11	85	21	2	1	74	1.04
1124070--1124205	13	10.3	12	78	14	78	21	2	1	74	1.03
1124112--1124176	3	22.3	3	84	12	91	27	1	0	70	0.96
1124179--1124212	16	2.1	16	89	10	52	11	5	0	82	0.83
1124166--1124314	63	2.3	66	76	12	148	24	3	6	66	1.30
1125187--1125233	16	2.9	16	80	0	58	17	0	4	78	0.90
1125256--1125334	5	14.8	5	73	19	54	13	5	2	78	1.02
1125256--1125334	17	4.5	17	75	15	72	13	5	2	78	1.02
1125351--1125806	58	7.7	58	79	9	422	46	7	12	34	1.68
1125351--1125808	119	3.8	119	82	7	547	46	7	12	34	1.69
1126420--1126459	21	1.9	21	100	0	80	20	7	17	55	1.66
1141956--1142005	25	2.0	25	100	0	100	40	8	12	40	1.72
1148899--1148950	24	2.2	24	92	0	86	59	7	7	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153579--1153637	24	2.5	24	88	0	91	55	6	6	30	1.52
1156171--1156225	26	2.2	26	87	9	78	32	14	0	52	1.42
1156170--1156225	25	2.2	24	82	14	69	33	14	0	51	1.42
1157205--1157255	17	2.8	19	77	14	54	45	1	3	49	1.32
1166310--1166366	29	2.0	29	92	0	96	43	0	12	43	1.41
1166314--1166391	29	2.7	29	84	4	86	38	2	15	43	1.60
1168006--1168080	6	12.8	6	72	10	66	49	2	0	48	1.15
1173188--1173222	17	2.1	16	89	5	52	57	11	20	11	1.64
1176044--1176129	32	2.6	34	80	8	99	45	1	2	51	1.21
1179662--1179697	18	2.1	18	89	5	56	44	11	19	25	1.83
1180704--1180732	3	9.7	3	100	0	58	68	0	0	31	0.89
1181937--1181990	19	2.9	18	75	5	54	38	0	3	57	1.17
1183230--1183263	10	3.3	10	84	8	50	14	0	0	85	0.60
1183281--1183305	11	2.3	11	100	0	50	36	0	0	64	0.94
1183418--1183487	34	2.1	34	81	7	81	61	0	2	35	1.11
1183860--1183909	19	2.7	19	78	6	59	56	0	2	42	1.11
1183896--1183958	27	2.3	26	83	5	72	57	0	1	41	1.08
1183898--1183971	19	4.2	19	73	21	63	59	0	1	39	1.06
1183860--1183971	9	12.4	9	70	16	63	58	0	1	40	1.09
1184416--1184465	2	25.0	2	91	0	82	46	4	0	50	1.20
1188430--1188472	22	1.9	23	85	4	61	46	2	0	51	1.13
1189536--1189575	3	13.3	3	100	0	80	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190487--1190575	30	3.0	29	78	12	92	46	0	10	43	1.37
1191480--1191505	13	2.0	13	100	0	52	46	7	7	38	1.61
1191589--1191655	22	3.0	21	79	12	64	53	0	0	46	1.00
1191589--1191655	24	3.0	22	80	8	66	53	0	0	46	1.00
1191681--1191883	107	1.9	109	88	2	311	53	5	3	36	1.42
1198504--1198533	6	5.0	6	95	0	51	20	30	33	16	1.94
1204794--1204927	45	3.0	45	92	0	223	35	26	14	23	1.93
1207729--1207788	23	2.4	25	81	10	70	48	0	1	50	1.11
1207845--1207886	14	2.9	14	89	3	66	52	0	0	47	1.00
1210712--1210841	69	1.9	69	86	0	188	42	3	5	49	1.41
1214805--1214842	13	2.7	15	84	8	53	2	28	0	68	1.03
1229305--1229338	6	5.7	6	92	0	59	50	0	0	50	1.00
1229541--1229578	12	2.9	13	84	11	51	50	0	0	50	1.00
1229541--1229594	25	2.2	25	83	6	65	48	0	3	48	1.19
1231002--1231041	17	2.3	18	87	12	57	67	0	0	32	0.91
1236223--1236252	3	10.0	3	100	0	60	33	0	0	66	0.92
1245463--1245493	15	2.1	15	100	0	62	51	6	6	35	1.53
1248179--1248451	142	1.9	142	84	1	368	32	13	15	39	1.85
1249922--1249959	19	2.0	19	100	0	76	21	36	5	36	1.76
1249924--1249965	19	2.2	19	91	0	66	23	28	4	42	1.74
1254142--1254198	3	19.3	3	90	3	89	66	0	0	33	0.92
1254691--1254743	22	2.4	22	90	0	79	45	7	5	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254760--1254833	22	3.4	22	72	7	69	39	6	8	45	1.60
1254814--1254870	30	1.9	30	85	7	80	40	10	5	43	1.62
1254846--1254917	22	3.3	22	76	0	72	37	9	6	45	1.64
1254924--1254985	22	2.8	22	76	9	63	37	6	6	50	1.54
1255086--1255119	16	2.2	15	89	5	50	38	5	2	52	1.41
1255140--1255250	44	2.5	44	85	2	125	34	8	5	52	1.54
1255174--1255250	22	3.5	22	80	0	91	36	5	5	53	1.46
1255174--1255252	11	7.2	11	73	0	68	36	5	5	53	1.45
1257124--1257607	125	3.9	124	77	6	422	36	13	14	35	1.85
1258862--1258961	48	2.1	48	96	0	182	36	15	14	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126