genome.fa.s667.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  56  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133430--11133501	24	3.0	24	81	6	74	29	4	2	63	1.27
11133463--11133517	24	2.3	24	96	0	101	36	7	3	52	1.47
11140559--11140607	6	8.2	6	88	0	62	38	0	57	4	1.18
11140559--11140607	18	2.7	18	84	12	73	38	0	57	4	1.18
11145263--11145289	14	1.9	14	100	0	54	22	11	22	44	1.84
11145295--11145336	22	1.9	22	85	0	57	40	9	9	40	1.70
11151952--11152050	49	2.0	49	92	0	162	37	7	11	44	1.67
11153752--11153791	21	1.9	21	89	0	62	32	15	20	32	1.93
11158636--11158678	21	2.0	21	86	8	61	41	25	4	27	1.75
11159049--11159095	2	23.5	2	87	8	69	48	0	4	46	1.21
11158565--11163748	497	10.3	513	80	7	3867	39	16	12	31	1.87
11159085--11163748	497	9.4	496	83	3	5195	39	16	12	31	1.87
11158539--11163748	994	5.2	989	82	4	5609	39	16	13	31	1.87
11163339--11164629	443	2.9	440	84	4	1677	40	17	11	30	1.85
11164219--11167936	496	7.5	493	84	4	4502	39	17	12	30	1.86
11164219--11167936	990	3.7	987	85	4	4677	39	17	12	30	1.86
11167613--11168285	335	2.0	333	90	1	1042	37	16	12	34	1.86
11168263--11168287	13	1.9	13	100	0	50	56	0	0	44	0.99
11168448--11170946	496	5.0	498	82	5	2809	39	16	12	31	1.86
11170743--11170776	15	2.3	15	100	0	68	55	5	0	38	1.24
11171457--11172144	359	1.9	359	87	2	1008	37	16	12	33	1.86
11172132--11172160	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11172381--11174469	498	4.2	498	79	6	1957	39	17	12	30	1.86
11174060--11174084	2	12.5	2	100	0	50	52	0	0	48	1.00
11174995--11175023	2	14.5	2	100	0	58	51	0	0	48	1.00
11176466--11176492	2	13.5	2	100	0	54	51	0	0	48	1.00
11175669--11177491	510	3.6	508	85	2	2346	38	17	12	32	1.87
11177973--11178904	471	2.0	472	85	3	1261	38	15	12	32	1.86
11180775--11180799	2	12.5	2	100	0	50	52	0	0	48	1.00
11181281--11181324	2	22.0	2	90	0	70	50	0	2	47	1.13
11181585--11182506	462	2.0	455	85	7	1238	40	17	12	29	1.86
11182251--11182277	2	13.5	2	100	0	54	51	0	0	48	1.00
11183471--11183518	2	24.0	2	87	8	71	50	2	0	47	1.12
11183949--11186048	496	4.2	497	82	6	2244	39	16	12	31	1.87
11185873--11185904	2	16.0	2	100	0	64	50	0	0	50	1.00
11186321--11186349	2	14.5	2	100	0	58	51	0	0	48	1.00
11187356--11188148	422	1.9	418	86	3	1119	38	17	13	30	1.88
11188785--11190904	491	4.4	490	82	6	2154	39	17	13	30	1.88
11195911--11195951	21	2.0	21	85	9	57	31	24	9	34	1.88
11195829--11197376	488	3.2	489	85	2	1983	39	16	12	30	1.86
11197408--11199120	498	3.4	494	82	3	1924	39	16	12	30	1.86
11198430--11199756	738	1.8	735	84	3	1824	38	16	13	31	1.87
11199170--11200289	496	2.3	492	83	4	1369	39	16	12	31	1.87
11200494--11201939	489	3.0	488	86	3	1914	39	17	12	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11200494--11203389	490	6.0	491	81	7	3217	39	17	12	30	1.87
11201924--11203375	494	2.9	490	85	5	1914	40	17	12	30	1.86
11203776--11206730	493	6.1	489	84	5	3671	39	17	12	30	1.87
11205204--11206711	494	3.1	478	88	4	2137	39	17	12	30	1.86
11206718--11208599	491	3.8	490	85	4	2546	39	18	12	30	1.87
11212815--11212856	21	2.0	21	82	13	52	64	0	14	21	1.29
11216052--11216085	17	2.1	16	89	10	52	38	14	8	38	1.78
11219367--11219411	21	2.0	22	83	8	56	22	35	28	13	1.92
11227321--11227363	16	2.5	17	82	17	54	58	25	2	13	1.48
11227727--11227757	15	2.1	15	93	0	53	74	0	0	25	0.82
11227790--11228005	110	2.0	112	83	8	282	49	4	9	36	1.56
11227771--11228023	55	4.5	56	75	15	238	49	4	9	36	1.55
11234275--11234299	5	5.0	5	100	0	50	60	0	0	40	0.97
11238985--11239034	2	25.0	2	95	0	91	0	52	0	48	1.00
11246610--11246643	15	2.3	15	89	0	50	73	2	0	23	0.97
11246657--11246698	22	1.9	22	90	9	68	61	0	0	38	0.96
11247895--11247962	30	2.3	30	80	7	77	45	0	7	47	1.31
11247920--11248054	26	5.2	25	73	15	89	54	1	2	42	1.22
11247920--11248056	51	2.6	54	82	4	147	53	1	2	43	1.22
11247917--11248044	29	4.6	30	70	20	84	53	1	2	42	1.23
11247948--11248055	24	4.2	24	73	15	83	53	1	0	43	1.17
11265721--11265768	20	2.4	20	96	0	87	35	31	18	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11276413--11276466	20	2.7	20	80	11	74	18	22	22	37	1.95
11302326--11302355	7	4.3	7	100	0	60	16	0	0	83	0.65
11302919--11304893	181	11.1	179	74	8	925	41	8	8	42	1.64
11303597--11303645	17	2.8	18	74	22	50	44	2	10	42	1.49
11304434--11304475	20	2.1	20	86	8	59	54	0	4	40	1.21
11304160--11304893	180	4.1	180	78	4	524	41	7	8	41	1.65
11309251--11309292	15	2.9	15	82	13	52	21	0	26	52	1.47
11309339--11309363	13	1.9	13	100	0	50	16	0	28	56	1.41
11309338--11309404	21	3.2	21	78	17	68	17	0	26	55	1.43
11309345--11309507	28	5.7	27	75	16	125	19	0	28	51	1.51
11309488--11309578	14	6.3	14	70	12	58	23	4	24	48	1.69
11309695--11309750	4	15.8	4	96	3	63	28	0	0	71	0.86
11309695--11309764	9	6.8	11	90	9	73	30	0	0	70	0.88
11309721--11309764	3	14.3	3	95	4	79	31	0	0	68	0.90
11309717--11309764	25	1.9	25	100	0	96	31	0	0	68	0.90
11309982--11310011	15	1.9	16	93	6	53	13	3	3	80	0.97
11310091--11310139	21	2.3	21	82	6	64	77	2	0	20	0.87
11311609--11311675	22	3.0	22	86	4	82	32	19	17	29	1.95
11311447--11311651	106	1.9	106	85	3	279	34	15	16	34	1.90
11311531--11311911	129	3.0	127	81	6	423	36	14	14	34	1.87
11311738--11311801	22	2.9	22	84	9	69	35	14	17	32	1.89
11314110--11314143	9	3.9	9	88	7	52	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11314111--11314143	17	1.9	17	93	0	57	18	0	0	81	0.68
11320743--11320792	15	3.3	15	85	2	64	18	0	26	56	1.42
11320830--11320999	14	12.1	13	68	16	90	15	2	32	48	1.60
11320830--11320942	29	4.0	29	76	14	94	16	2	30	49	1.60
11320854--11321042	101	1.9	100	84	5	256	14	2	33	49	1.56
11320932--11321051	28	4.2	28	83	5	152	12	1	35	50	1.50
11320917--11321051	58	2.3	58	83	8	152	14	1	34	49	1.52
11321220--11321245	3	8.7	3	100	0	52	0	0	30	69	0.89
11321380--11321406	2	13.5	2	100	0	54	48	0	0	51	1.00
11321480--11321509	7	4.3	7	100	0	60	13	0	0	86	0.57
11321473--11321512	13	3.0	13	89	7	62	15	2	0	82	0.77
11330067--11330106	21	1.9	21	100	0	80	42	12	5	40	1.64
11336258--11336324	30	2.2	30	82	12	75	38	11	4	44	1.62
11336311--11336374	30	2.1	30	82	0	74	40	18	1	39	1.60
11339676--11339720	15	2.9	15	81	12	54	6	8	8	75	1.19
11339658--11339721	15	4.3	15	74	18	53	7	7	6	78	1.10
11339685--11339732	17	2.8	18	84	6	55	10	6	6	77	1.13
11340216--11340259	16	2.6	18	79	13	58	54	0	0	45	0.99
11345377--11345420	17	2.5	18	77	3	54	45	0	9	45	1.35
11345397--11345503	30	3.6	30	77	0	88	47	0	8	42	1.40
11348913--11348958	18	2.6	18	85	0	65	43	0	0	56	0.99
11355230--11355277	2	24.0	2	78	0	51	47	4	6	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11357352--11357397	2	23.0	2	90	0	74	47	2	2	47	1.26
11358770--11358805	18	2.0	18	100	0	72	16	16	27	38	1.90
11362823--11363114	145	2.0	145	97	0	548	32	16	18	31	1.94
11363283--11363307	12	2.1	12	100	0	50	48	0	8	44	1.32
11384315--11384350	7	5.4	7	93	6	58	86	0	0	13	0.58
11384316--11384350	6	5.5	6	96	3	52	85	0	0	14	0.59
11384316--11384359	20	2.2	20	88	8	63	84	0	4	11	0.77
11384869--11384909	18	2.3	18	91	0	64	24	58	2	14	1.49
11388449--11388489	2	20.5	2	94	0	73	53	46	0	0	1.00
11388494--11388518	4	6.2	4	100	0	50	24	0	24	52	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126