genome.fa.s667.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  100  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19640517--19640572	16	3.6	16	80	9	62	46	0	0	53	1.00
19647853--19647924	31	2.4	30	79	4	81	45	6	2	44	1.45
19649883--19649932	10	5.4	9	86	13	59	22	0	2	76	0.89
19649898--19649932	10	3.5	10	96	0	61	22	0	0	77	0.78
19649998--19650054	26	2.2	25	81	9	62	43	10	5	40	1.62
19650143--19650204	32	1.9	32	83	0	79	62	9	6	20	1.47
19650144--19650198	18	3.0	18	75	19	60	65	7	7	20	1.41
19650688--19650727	8	4.9	8	84	6	53	17	2	0	80	0.83
19650688--19650727	17	2.4	16	84	8	53	17	2	0	80	0.83
19650864--19651053	42	4.5	42	88	3	251	43	18	13	24	1.86
19651002--19651201	41	4.8	42	83	10	250	39	21	13	26	1.90
19651779--19651819	22	1.9	22	90	5	66	36	17	9	36	1.82
19661361--19661427	27	2.5	27	90	0	107	49	8	1	40	1.43
19662193--19662225	2	16.5	2	100	0	66	51	0	0	48	1.00
19674043--19674085	20	2.2	20	83	8	52	20	11	2	65	1.36
19678338--19678399	32	1.9	33	84	12	85	24	12	0	62	1.30
19678662--19678710	23	2.1	23	81	7	55	63	2	4	30	1.24
19679000--19679087	46	1.9	46	92	0	149	48	12	25	13	1.77
19681813--19681840	3	9.3	3	100	0	56	32	0	0	67	0.91
19682071--19682103	17	2.0	17	88	5	50	69	0	21	9	1.15
19682172--19682233	25	2.5	26	78	5	74	75	0	3	20	0.94
19682173--19682230	31	1.9	29	82	6	71	74	0	3	22	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19682573--19682617	23	2.0	23	86	8	65	44	0	13	42	1.43
19683007--19683049	20	2.2	20	83	4	52	60	6	6	25	1.48
19694617--19694656	19	2.1	19	100	0	80	32	15	0	52	1.43
19700163--19700187	10	2.5	10	100	0	50	36	16	0	48	1.46
19701175--19701221	21	2.2	22	84	3	60	55	4	10	29	1.53
19710443--19710497	23	2.3	24	84	9	69	63	0	5	30	1.17
19710764--19710851	46	1.9	46	92	0	149	47	12	26	13	1.78
19713618--19713658	3	13.7	3	100	0	82	68	0	0	31	0.90
19713729--19713769	18	2.3	18	80	12	50	63	0	2	34	1.08
19713836--19713868	17	2.0	17	88	5	50	69	0	21	9	1.15
19713981--19714012	15	2.1	15	94	0	55	87	3	0	9	0.64
19714263--19714313	14	3.5	15	79	10	52	74	0	3	21	0.98
19714264--19714320	30	1.9	30	85	7	80	70	0	5	24	1.08
19720115--19720171	27	2.2	26	90	3	87	35	3	0	61	1.13
19721994--19722023	15	1.9	16	93	6	53	56	0	0	43	0.99
19722040--19722122	42	2.0	42	80	7	96	49	2	1	46	1.22
19729470--19729505	16	2.3	15	85	4	54	55	0	0	44	0.99
19730270--19730299	2	15.0	2	100	0	60	50	0	0	50	1.00
19730383--19730557	81	2.2	81	90	0	278	40	5	8	45	1.57
19730814--19730844	15	2.1	15	93	0	53	45	19	3	32	1.66
19731117--19731158	16	2.6	17	74	11	52	42	9	9	38	1.70
19736089--19736134	18	2.6	17	80	10	56	23	6	2	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19736089--19736142	17	3.1	17	81	7	63	25	7	3	62	1.38
19737380--19737413	9	3.7	9	92	4	50	82	0	17	0	0.67
19746832--19746871	20	2.0	20	90	0	62	37	12	17	32	1.87
19753247--19753324	29	2.5	31	76	10	72	47	5	10	37	1.60
19756283--19756316	14	2.4	14	85	0	50	41	0	0	58	0.98
19756277--19756333	20	2.8	20	83	2	60	47	0	0	52	1.00
19758034--19758082	20	2.5	20	83	3	64	63	2	2	32	1.17
19759275--19759307	9	3.5	10	92	8	52	75	0	0	24	0.80
19760181--19760226	20	2.2	21	88	3	67	21	2	13	63	1.40
19760195--19760254	25	2.4	25	78	13	61	30	1	8	60	1.36
19760902--19760944	21	2.0	22	86	13	63	27	4	2	65	1.25
19760922--19760973	27	1.9	27	84	7	70	40	3	1	53	1.30
19767670--19767715	24	1.9	24	100	0	92	30	13	30	26	1.93
19768540--19768783	121	2.0	122	90	2	384	26	10	22	40	1.85
19775109--19775396	147	2.0	146	86	3	400	33	9	28	29	1.88
19775592--19775637	23	2.0	23	83	4	58	43	19	8	28	1.80
19797579--19797615	18	2.1	18	94	0	65	67	8	8	16	1.40
19797573--19797616	18	2.6	17	86	10	63	68	6	9	15	1.38
19801057--19801088	2	16.5	2	93	6	57	50	0	0	50	1.00
19801057--19801085	15	1.9	15	100	0	58	48	0	0	51	1.00
19809029--19809070	2	21.0	2	90	0	66	45	0	0	54	0.99
19809036--19809078	20	2.2	20	100	0	86	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19815901--19815951	25	2.1	24	81	3	57	58	1	3	35	1.28
19819434--19819480	23	2.0	23	95	0	85	27	17	6	48	1.71
19823984--19824026	21	2.2	19	84	12	52	53	4	0	41	1.21
19825836--19827187	655	2.1	648	90	4	2077	34	11	11	42	1.78
19827400--19830509	656	4.7	657	93	1	5135	35	11	11	41	1.77
19830406--19830445	21	1.9	21	85	10	55	57	10	7	25	1.57
19833767--19833827	15	4.1	14	76	14	59	19	0	27	52	1.46
19833793--19833829	15	2.5	15	95	0	65	24	0	21	54	1.45
19834544--19834620	35	2.2	35	88	2	118	49	3	24	22	1.66
19834948--19835099	33	4.7	33	70	10	107	30	15	17	36	1.91
19835021--19835237	98	2.2	98	82	6	249	27	13	19	39	1.90
19835072--19835259	98	1.9	98	84	2	252	28	13	21	36	1.92
19835438--19835532	22	4.3	22	76	5	84	26	15	17	40	1.90
19835430--19835531	44	2.3	43	78	6	105	26	15	17	40	1.90
19836159--19836211	12	4.7	11	80	17	56	9	11	0	79	0.94
19839802--19839840	20	2.0	20	94	0	69	15	30	30	23	1.95
19840140--19840172	12	2.9	12	86	13	52	21	0	0	78	0.75
19840487--19840553	31	2.2	31	83	5	82	23	23	20	31	1.98
19840621--19840665	19	2.4	19	80	0	54	22	28	22	26	1.99
19841010--19841607	156	3.8	156	97	0	1097	29	14	18	38	1.90
19843556--19843629	9	8.0	9	77	16	80	77	0	10	12	1.01
19843559--19843629	20	3.8	20	80	10	78	78	0	9	11	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19843558--19843637	29	2.8	29	81	9	85	77	0	11	11	0.99
19843559--19843637	18	4.2	18	79	17	90	77	0	11	11	1.00
19843597--19843628	8	3.9	8	92	8	55	78	0	12	9	0.97
19843559--19843629	17	3.9	17	79	16	72	78	0	9	11	0.95
19844804--19844894	25	3.8	25	78	11	100	41	10	8	38	1.71
19844791--19844926	25	5.9	22	72	11	69	40	11	11	36	1.79
19844791--19844881	46	2.0	46	93	0	155	41	9	10	37	1.74
19844847--19844909	25	2.5	25	84	0	90	41	14	11	33	1.81
19844875--19845123	45	5.7	46	75	13	238	38	10	13	37	1.79
19844925--19845169	45	5.4	46	81	5	259	37	9	14	37	1.80
19844928--19845308	21	16.7	21	69	15	188	38	9	14	37	1.80
19844925--19845123	91	2.2	91	83	1	247	38	9	14	38	1.77
19845115--19845323	46	4.5	46	86	2	249	37	11	14	36	1.82
19845019--19845234	118	1.8	116	87	3	317	39	10	14	35	1.81
19845115--19845323	93	2.3	92	86	0	283	37	11	14	36	1.82
19845796--19846253	41	11.1	41	83	4	492	23	12	21	42	1.86
19845796--19846253	83	5.5	84	83	3	473	23	12	21	42	1.86
19846177--19846781	306	2.0	295	90	3	958	32	11	21	35	1.89
19847893--19848072	51	3.4	51	73	7	180	55	6	10	28	1.57
19847814--19848149	107	3.1	107	90	3	509	53	9	10	25	1.65
19848741--19848786	17	2.8	16	83	6	56	10	19	0	69	1.17
19851697--19851740	16	2.8	16	83	13	63	54	4	15	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19855185--19855273	16	5.7	15	75	7	72	19	1	25	53	1.51
19855193--19855236	15	2.9	15	89	3	61	15	0	29	54	1.42
19855323--19855367	16	2.9	15	80	6	54	33	4	15	46	1.66
19855323--19855516	15	12.7	15	67	11	63	25	2	22	50	1.60
19855463--19855554	14	6.5	13	73	21	78	19	2	23	54	1.55
19855491--19855554	28	2.2	28	88	2	92	18	1	26	53	1.54
19855378--19855558	15	12.3	14	69	16	89	20	1	24	52	1.56
19855863--19855898	3	11.7	3	94	5	63	33	0	0	66	0.92
19855953--19856033	33	2.5	31	75	16	76	18	7	2	71	1.21
19856074--19856166	3	31.0	3	88	6	109	25	0	6	67	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126