genome.fa.s667.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  47  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9243892--9243947	25	2.2	26	81	9	62	32	1	5	60	1.29
9243926--9243976	9	5.4	9	77	9	57	41	0	3	54	1.19
9243926--9244257	10	33.3	10	66	13	73	38	1	6	53	1.36
9244122--9244168	9	5.0	9	87	7	58	40	2	4	53	1.32
9244063--9244174	57	2.0	55	82	6	136	38	0	6	54	1.32
9248587--9248621	12	2.9	12	91	0	61	57	22	11	8	1.61
9248685--9248729	15	3.0	16	81	12	60	62	0	6	31	1.21
9256385--9256443	19	3.1	19	82	0	73	37	25	15	22	1.93
9262740--9262808	24	2.9	23	75	18	70	75	0	20	4	0.97
9262740--9262801	10	5.9	10	74	10	52	77	0	19	3	0.90
9262788--9262854	25	2.7	24	77	9	71	64	2	23	8	1.37
9263838--9263916	22	3.6	22	80	0	77	37	21	16	24	1.93
9263999--9264138	67	2.1	68	82	9	171	34	17	14	33	1.90
9263998--9264173	33	5.2	35	74	11	127	35	17	14	32	1.90
9264091--9264210	33	3.6	33	79	4	118	40	18	11	30	1.86
9264488--9264520	14	2.3	15	89	5	50	81	15	3	0	0.80
9264478--9264526	19	2.6	18	87	9	62	77	16	4	2	1.01
9264801--9264857	3	18.7	3	92	3	96	66	1	0	31	1.02
9267052--9267141	13	7.2	13	74	9	80	53	20	6	20	1.67
9268592--9268664	26	2.8	26	89	0	101	13	24	5	56	1.59
9270762--9270832	19	3.6	20	73	19	60	71	2	22	2	1.12
9271785--9271833	22	2.2	22	96	0	89	38	26	12	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9272072--9272186	33	3.5	32	81	8	124	35	21	15	26	1.94
9272072--9272721	32	20.4	33	67	17	146	35	19	15	29	1.93
9272248--9272339	33	2.8	33	77	8	100	33	21	17	27	1.96
9272315--9272463	63	2.4	63	81	3	167	36	17	13	32	1.89
9272558--9272721	66	2.5	65	74	13	167	34	20	15	28	1.94
9272374--9272671	94	3.1	94	80	8	298	35	18	15	30	1.92
9272665--9272782	62	1.9	62	82	6	150	33	16	17	33	1.92
9272807--9272857	23	2.3	23	86	3	68	33	19	21	25	1.97
9272950--9273072	15	7.7	15	73	12	77	80	12	2	4	0.97
9272947--9273025	23	3.4	23	82	7	97	78	15	1	5	0.99
9272998--9273064	34	2.0	34	85	5	91	82	7	2	7	0.94
9272950--9273072	7	16.6	7	72	15	70	80	12	2	4	0.97
9272949--9273072	8	15.5	8	75	12	76	80	12	2	4	0.96
9273493--9273557	31	2.3	28	78	21	73	61	1	4	32	1.26
9273827--9273869	2	21.5	2	95	0	77	51	2	0	46	1.13
9273929--9274247	164	2.0	161	88	3	478	46	13	27	11	1.79
9273929--9274247	162	2.0	160	88	3	469	46	13	27	11	1.79
9275223--9275326	52	2.0	52	84	3	138	27	16	7	48	1.73
9276120--9276224	52	2.0	52	88	0	156	26	20	9	42	1.83
9277252--9277276	7	3.6	7	100	0	50	76	0	0	24	0.80
9286074--9286195	46	2.7	46	88	5	183	33	4	12	49	1.62
9293541--9293629	29	3.0	29	79	9	90	37	19	4	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9297638--9297687	24	2.1	24	100	0	100	34	12	10	44	1.75
9298013--9298049	16	2.4	16	95	4	67	40	16	8	35	1.78
9301068--9301102	14	2.5	14	100	0	70	11	8	42	37	1.72
9314404--9314493	38	2.4	38	88	0	144	72	5	16	5	1.23
9316066--9316106	18	2.3	18	87	4	57	24	17	4	53	1.63
9324192--9324252	18	3.4	18	68	8	61	34	24	14	26	1.94
9324190--9324261	36	2.0	36	97	0	135	38	22	15	23	1.92
9335379--9335513	64	2.1	62	82	6	164	40	11	15	33	1.83
9335761--9336053	63	4.7	63	77	4	225	39	12	14	33	1.84
9335761--9335992	63	3.7	63	78	7	229	38	11	14	34	1.83
9335747--9336053	126	2.4	124	75	8	300	40	11	14	33	1.83
9339466--9339530	21	3.2	21	80	6	64	36	4	26	32	1.77
9339647--9339710	18	3.6	18	69	21	53	50	0	0	50	1.00
9340954--9341148	61	3.2	62	67	4	191	39	12	16	30	1.87
9340903--9341180	121	2.3	122	94	2	490	40	15	15	29	1.88
9341353--9341516	63	2.6	63	81	2	197	37	16	11	34	1.85
9341275--9342056	294	2.7	294	85	3	1056	36	14	14	34	1.87
9349134--9349216	41	2.0	41	97	0	157	20	7	27	44	1.78
9351476--9351557	40	2.0	40	100	0	164	25	17	29	28	1.97
9370255--9370391	7	21.8	6	71	21	79	16	1	36	45	1.57
9370290--9370384	12	8.2	12	70	25	55	14	0	37	47	1.45
9370290--9370365	30	2.5	31	82	6	93	14	0	36	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9370231--9370384	80	1.9	79	82	8	188	16	1	37	44	1.56
9370323--9370390	19	3.6	19	81	13	86	19	0	36	44	1.51
9370373--9370583	26	8.1	26	72	18	145	12	3	39	43	1.61
9370380--9370533	51	2.8	54	76	18	176	13	3	38	44	1.60
9370437--9370476	19	2.1	19	86	9	55	17	0	35	47	1.48
9370552--9370624	28	2.7	26	83	8	92	5	6	49	38	1.53
9372017--9372475	143	3.2	142	76	5	415	42	15	11	30	1.82
9372810--9372839	12	2.4	13	88	11	53	33	0	0	66	0.92
9372814--9372844	12	2.6	12	94	0	53	32	0	0	67	0.91
9372871--9372923	21	2.6	21	88	11	83	50	0	0	49	1.00
9372871--9372922	22	2.5	22	93	6	90	51	0	0	48	1.00
9373998--9374045	15	3.1	15	77	14	53	22	33	0	43	1.54
9374124--9374175	11	5.1	10	73	13	52	13	15	0	71	1.15
9374120--9374170	22	2.3	23	83	12	70	15	17	0	66	1.25
9374120--9374171	24	2.3	22	87	9	70	15	17	0	67	1.24
9374797--9374831	13	2.8	13	91	4	54	2	5	8	82	0.91
9374973--9375113	70	2.0	70	100	0	282	29	29	9	31	1.89
9378429--9378468	21	2.0	19	90	9	62	35	20	15	30	1.93
9392434--9392460	14	1.9	14	100	0	54	22	0	0	77	0.76
9392354--9392589	127	1.8	131	88	4	372	33	8	12	46	1.71
9393380--9393515	51	2.6	51	83	5	159	34	15	10	39	1.81
9397645--9397673	13	2.2	13	100	0	58	27	6	6	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9404375--9404423	20	2.3	22	79	10	57	42	6	4	46	1.47
9405026--9405120	48	2.0	49	93	2	165	45	7	17	29	1.76
9407752--9407857	40	2.7	40	88	4	153	37	10	14	37	1.80
9408044--9408257	113	1.9	111	82	6	270	35	14	10	38	1.82
9408148--9408377	120	1.9	122	81	5	279	34	13	13	37	1.85
9408133--9408388	40	6.4	40	77	6	230	34	13	13	39	1.83
9408156--9408567	40	10.5	39	72	12	118	36	14	13	36	1.85
9408356--9408596	74	3.2	74	69	15	238	35	15	13	35	1.87
9408397--9408462	34	2.0	34	90	3	107	34	15	15	34	1.88
9408338--9408684	154	2.2	155	93	0	606	36	14	14	35	1.87
9408659--9408795	40	3.4	40	77	8	107	37	12	13	36	1.83
9410398--9410422	13	1.9	13	100	0	50	0	12	0	88	0.53
9410757--9410805	13	3.8	13	77	22	50	2	18	0	79	0.83
9410754--9410811	25	2.4	23	78	15	64	1	15	0	82	0.74
9410739--9410847	32	3.3	32	78	10	96	6	18	0	75	1.01
9410756--9410812	6	9.0	6	76	16	53	1	17	0	80	0.79
9417025--9417104	18	4.3	18	72	17	65	10	2	36	51	1.49
9417085--9417125	12	3.3	12	83	6	55	2	0	43	53	1.13
9417067--9417128	25	2.4	27	79	17	78	4	3	43	48	1.40
9417151--9417201	19	2.7	19	93	0	84	17	1	41	39	1.61
9432128--9432162	3	11.7	3	93	0	61	68	0	2	28	1.04
9432573--9432612	1	40.0	1	100	0	80	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9434460--9434496	3	12.3	3	100	0	74	67	0	0	32	0.91
9434495--9434531	3	12.3	3	100	0	74	32	0	0	67	0.91
9434544--9434586	23	1.9	22	85	4	59	62	0	6	30	1.21
9435567--9435607	21	1.9	22	90	5	66	46	9	0	43	1.36
9443109--9443144	10	3.6	10	88	0	54	52	11	27	8	1.65
9446656--9446696	21	2.0	21	90	0	64	12	19	12	56	1.67
9450495--9450536	18	2.3	19	87	8	68	64	4	9	21	1.42
9454723--9455043	145	2.2	146	81	6	366	39	10	12	37	1.78
9455537--9455778	127	1.9	126	86	5	344	36	14	14	34	1.87
9455684--9455970	107	2.7	106	86	3	373	35	13	14	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126