genome.fa.s667.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  86  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17047970--17048029	22	2.7	22	94	0	102	23	28	23	25	2.00
17047723--17048247	131	4.0	131	92	2	840	24	22	18	34	1.96
17048101--17048160	22	2.7	22	94	0	102	23	28	23	25	2.00
17048267--17048768	73	6.8	73	90	1	736	19	24	14	41	1.89
17048267--17048768	147	3.4	146	91	1	754	19	24	14	41	1.89
17048267--17048768	220	2.3	220	91	1	792	19	24	14	41	1.89
17049301--17049343	15	2.8	15	82	3	59	86	9	4	0	0.71
17049307--17049368	29	2.1	29	88	5	90	82	12	4	0	0.82
17049305--17049372	23	2.9	23	87	10	86	79	14	5	0	0.91
17053869--17053904	2	18.0	2	100	0	72	50	0	0	50	1.00
17059444--17059504	9	6.4	9	77	9	59	60	8	0	31	1.26
17059305--17059504	10	20.5	10	67	12	85	57	8	1	33	1.37
17059402--17059487	21	4.1	22	72	13	65	62	4	1	31	1.23
17059325--17059487	19	8.7	19	64	25	71	57	7	1	33	1.37
17060173--17060214	22	1.9	22	85	0	57	33	0	7	59	1.25
17060237--17060410	10	17.4	10	66	11	54	36	2	5	55	1.39
17060329--17060410	9	8.4	9	74	12	65	35	0	4	59	1.19
17060321--17060402	20	4.2	20	84	4	107	32	0	6	60	1.21
17060357--17060424	28	2.5	27	71	23	70	38	0	5	55	1.24
17060330--17060424	20	5.0	19	77	7	86	36	0	6	56	1.25
17061206--17061248	22	2.0	22	95	0	77	32	13	13	39	1.85
17065055--17065098	22	2.0	22	95	0	79	31	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17065337--17065723	200	1.9	200	98	0	747	42	11	10	35	1.76
17066393--17066467	37	2.0	37	94	0	132	24	5	22	48	1.71
17067195--17067267	28	2.6	28	74	6	69	45	4	8	42	1.53
17067822--17067860	19	2.1	19	100	0	78	33	0	10	56	1.33
17068973--17069026	28	1.9	28	92	0	90	62	9	0	27	1.25
17070218--17070247	5	5.8	5	96	4	51	80	0	0	20	0.72
17071845--17071879	14	2.6	14	90	4	54	34	8	8	48	1.64
17075554--17075643	46	2.0	46	95	2	164	50	10	14	25	1.74
17075666--17075732	35	1.9	35	84	6	91	47	4	5	41	1.48
17082110--17082159	2	25.0	2	91	0	82	50	4	0	46	1.20
17087341--17087429	45	2.0	44	85	10	121	0	25	3	70	1.02
17087988--17088019	16	2.0	16	93	0	55	25	31	40	3	1.71
17095618--17095663	23	2.0	23	100	0	92	34	17	13	34	1.88
17101017--17101059	15	2.6	18	75	21	56	51	0	0	48	1.00
17100989--17101070	44	1.9	44	87	7	125	48	2	1	47	1.22
17101195--17101240	13	3.3	14	77	17	51	47	2	0	50	1.13
17106850--17107080	121	1.9	121	93	1	401	33	17	16	32	1.92
17107078--17107108	2	15.5	2	100	0	62	0	0	48	51	1.00
17120181--17120209	2	14.5	2	100	0	58	48	0	0	51	1.00
17122069--17122120	12	4.1	13	80	9	63	1	15	0	82	0.75
17122942--17122978	2	18.5	2	88	0	56	54	0	2	43	1.14
17123456--17123485	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17124752--17124836	26	3.3	25	80	6	91	27	15	2	55	1.52
17125297--17125437	71	2.0	70	92	1	237	34	14	17	34	1.90
17125368--17125817	90	5.1	90	84	5	558	38	16	17	27	1.91
17125586--17125855	83	3.2	82	73	9	225	39	16	18	25	1.92
17125368--17125855	173	2.8	172	85	3	564	38	16	18	27	1.92
17126019--17126060	22	1.9	22	90	0	66	30	2	9	57	1.44
17127690--17127733	17	2.6	17	96	0	79	38	9	0	52	1.33
17128823--17128868	18	2.6	17	86	10	58	4	13	2	80	0.95
17128844--17128882	20	2.0	20	84	0	51	0	15	5	79	0.90
17131045--17131070	8	3.2	8	100	0	52	42	11	0	46	1.40
17131065--17131119	18	2.9	19	84	10	60	27	1	0	70	0.97
17131090--17131119	3	10.3	3	92	7	53	33	0	0	66	0.92
17133247--17133493	15	17.1	15	68	21	104	52	0	1	45	1.14
17133220--17133323	22	5.1	21	75	19	96	49	0	0	50	1.07
17133220--17133375	20	8.0	20	70	22	102	48	0	1	50	1.14
17133397--17133497	21	4.1	25	67	26	81	58	0	0	41	0.98
17135339--17135608	120	2.3	115	84	7	328	25	9	8	56	1.60
17135513--17135609	50	2.0	49	85	6	133	29	9	8	52	1.62
17149153--17149307	52	3.0	52	82	3	177	26	26	7	39	1.83
17151890--17151919	8	3.8	8	100	0	60	63	0	0	36	0.95
17151875--17151908	13	2.8	12	91	8	52	67	0	0	32	0.91
17158089--17158114	6	4.3	6	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17158613--17158723	26	4.3	26	88	4	163	27	12	3	56	1.52
17159125--17159355	116	2.0	116	100	0	462	36	19	16	28	1.93
17159299--17159439	71	2.0	70	95	1	255	34	13	17	34	1.88
17159370--17159819	90	5.1	90	82	6	524	38	16	17	28	1.90
17159370--17159857	173	2.8	172	83	3	546	38	16	17	27	1.91
17160503--17160543	19	2.2	19	86	0	55	46	0	0	53	1.00
17160811--17160900	6	14.3	6	69	17	58	22	2	1	74	0.99
17160813--17160900	23	3.9	22	71	19	65	22	2	1	73	1.01
17160843--17160903	28	2.3	28	80	8	74	26	1	0	72	0.94
17160824--17160924	4	24.8	4	67	15	55	24	3	0	70	1.11
17160812--17160919	8	14.3	7	76	19	69	23	3	0	72	1.07
17160813--17160919	32	3.4	30	78	13	101	23	3	0	71	1.07
17161664--17161706	3	14.7	3	95	4	79	30	0	0	69	0.88
17161738--17161772	16	2.1	17	89	5	54	20	0	0	80	0.72
17161786--17161912	59	2.1	60	82	4	159	50	7	7	34	1.59
17161786--17161931	59	2.5	59	80	7	145	49	6	8	35	1.59
17167730--17167773	3	15.3	3	82	17	58	27	2	0	70	0.99
17168598--17168641	19	2.4	18	81	7	61	11	2	4	81	0.92
17169847--17170093	15	17.1	15	69	21	113	52	0	1	45	1.11
17169820--17169923	22	5.1	21	75	19	96	49	0	0	50	1.07
17169847--17169979	11	12.1	11	64	20	55	48	0	1	48	1.15
17169820--17169975	20	8.0	20	70	22	102	48	0	1	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17169836--17170017	101	1.8	96	85	12	253	50	0	1	47	1.15
17169997--17170097	21	4.1	25	67	26	81	58	0	0	41	0.98
17169880--17170095	54	4.2	50	71	17	165	53	0	1	44	1.12
17170212--17170257	16	2.8	17	74	9	51	71	6	0	21	1.08
17172395--17172929	130	4.1	129	79	2	500	34	8	10	46	1.68
17176174--17176266	46	2.0	46	95	2	170	49	7	12	30	1.69
17176732--17176851	62	1.9	62	93	0	204	37	11	6	44	1.67
17186470--17186531	20	2.9	22	79	15	60	45	1	3	50	1.27
17196314--17196362	2	26.0	2	76	12	50	51	0	2	46	1.12
17197705--17197742	19	2.1	19	85	5	51	5	10	0	84	0.77
17199356--17199400	21	2.1	21	84	15	58	4	22	0	73	1.01
17200610--17201044	241	1.8	236	90	4	694	44	5	4	45	1.47
17212462--17212499	19	2.1	19	85	5	51	5	10	0	84	0.77
17214113--17214160	25	1.9	25	86	0	69	2	20	0	77	0.88
17219337--17219364	2	14.0	2	100	0	56	50	0	0	50	1.00
17220248--17220294	3	15.7	3	90	0	76	72	0	0	27	0.85
17222401--17222441	20	2.0	20	95	0	73	41	2	0	56	1.13
17223224--17223300	3	25.0	3	84	5	100	31	3	1	63	1.20
17224728--17224800	25	2.7	27	81	14	89	50	0	0	49	1.00
17225008--17225045	14	2.5	15	87	8	51	34	2	0	63	1.09
17225747--17225797	14	3.6	14	76	7	50	66	3	0	29	1.09
17229718--17229764	24	2.0	24	82	0	58	23	2	4	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17230741--17230796	19	2.9	18	92	5	85	58	5	3	32	1.37
17231939--17231989	25	2.0	25	100	0	102	11	0	23	64	1.26
17231936--17231983	13	3.7	14	76	18	59	12	0	20	66	1.24
17235964--17235994	16	1.9	16	93	0	53	80	0	0	19	0.71
17238100--17238140	20	2.0	20	95	0	73	41	2	0	56	1.13
17238906--17238986	3	27.0	3	89	0	126	32	3	1	62	1.20
17240411--17240496	20	4.3	20	66	24	56	51	0	0	48	1.00
17240399--17240473	27	2.6	28	80	13	91	49	0	0	50	1.00
17240698--17240738	15	2.6	16	88	7	57	31	2	0	65	1.05
17241323--17241950	160	4.0	158	93	3	1034	38	17	14	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126