Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  93  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18174562--18174692
60
2.2
60
78
10
135
41
12
5
39
1.66
18186688--18186735
22
2.2
22
85
7
62
58
0
2
39
1.10
18187266--18187299
11
2.9
12
82
8
52
55
0
2
41
1.15
18195375--18195416
18
2.3
19
84
8
52
71
23
2
2
1.10
18195385--18195428
20
2.2
20
88
12
63
75
22
0
2
0.92
18196928--18196963
14
2.4
16
90
9
58
50
2
0
47
1.15
18207921--18207970
3
16.7
3
100
0
100
32
0
0
68
0.90
18211345--18211382
20
1.9
20
94
0
67
39
10
7
42
1.69
18215900--18215938
16
2.5
16
91
4
62
12
7
0
79
0.93
18216612--18216670
26
2.2
28
82
8
70
35
6
0
57
1.25
18218525--18218566
22
1.9
22
95
0
75
52
11
7
28
1.64
18218528--18218580
22
2.4
22
84
6
63
56
7
7
28
1.54
18221568--18221610
19
2.2
20
87
4
61
41
6
11
39
1.68
18224482--18224605
39
3.2
39
83
0
149
37
30
12
18
1.89
18226664--18226691
2
14.0
2
100
0
56
50
0
0
50
1.00
18229169--18229226
28
2.0
29
83
9
75
32
13
5
48
1.65
18229355--18229408
26
2.1
26
85
0
72
31
9
22
37
1.86
18230539--18230594
28
2.0
28
89
6
87
28
3
5
62
1.34
18235628--18235662
3
11.7
3
100
0
70
34
0
0
65
0.93
18236641--18236668
2
14.0
2
100
0
56
50
0
0
50
1.00
18236842--18236882
2
20.5
2
84
0
55
43
2
4
48
1.37
18242526--18242576
25
2.0
25
96
0
93
35
11
15
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18248697--18248738
2
21.0
2
95
0
75
52
0
0
47
1.00
18250333--18250380
22
2.1
23
85
11
64
6
22
8
62
1.46
18255281--18255323
18
2.5
17
85
7
59
25
2
0
72
0.97
18256487--18256525
18
2.2
18
90
0
60
23
17
41
17
1.91
18258480--18258521
22
1.9
22
95
0
75
28
14
14
42
1.84
18262354--18262397
22
2.0
22
86
0
61
36
9
11
43
1.72
18266693--18266747
3
18.7
3
89
10
87
69
0
0
30
0.89
18267140--18267165
10
2.6
10
100
0
52
46
0
0
53
1.00
18267478--18267636
86
1.8
87
84
9
218
26
9
16
47
1.76
18267568--18267783
57
3.8
58
72
12
187
26
13
16
43
1.85
18268583--18268632
18
2.8
17
82
8
55
76
6
2
16
1.08
18268601--18268641
9
4.7
9
90
6
66
78
2
0
19
0.87
18268601--18268641
17
2.3
18
91
4
66
78
2
0
19
0.87
18271257--18271296
16
2.4
17
91
4
64
35
10
10
45
1.71
18271661--18271693
2
16.5
2
100
0
66
51
0
0
48
1.00
18272564--18272606
18
2.3
18
88
8
59
46
2
2
48
1.27
18272559--18272611
20
2.5
22
77
20
60
50
1
1
45
1.23
18273128--18273175
25
2.0
25
83
4
62
39
2
6
52
1.39
18275292--18275332
22
1.9
21
95
5
73
21
0
24
53
1.46
18275385--18275452
7
9.7
7
70
0
55
13
4
33
48
1.62
18275314--18275413
28
3.6
27
78
7
101
19
2
28
51
1.58
18275385--18275452
21
3.2
21
89
0
100
13
4
33
48
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18275456--18275818
29
12.5
28
73
9
185
19
3
30
46
1.66
18275485--18275687
87
2.3
87
82
4
241
23
2
30
43
1.68
18275615--18275670
16
3.6
16
76
9
53
17
0
35
46
1.49
18275425--18275872
30
15.3
30
70
10
165
20
3
30
46
1.66
18275572--18275842
59
4.6
58
75
11
196
17
2
32
47
1.61
18275449--18275794
118
3.0
114
79
8
326
20
3
30
45
1.67
18275762--18275833
14
4.8
15
75
11
67
13
0
30
55
1.39
18275573--18275878
60
5.2
57
75
13
228
17
2
31
48
1.62
18275573--18275874
118
2.6
116
80
9
308
18
2
31
47
1.62
18276175--18276290
3
41.0
3
74
16
88
25
2
2
68
1.15
18277012--18277056
6
7.8
6
79
18
51
2
2
13
82
0.86
18277293--18277319
10
2.7
10
100
0
54
7
11
51
29
1.64
18277364--18277388
11
2.3
11
100
0
50
0
0
8
92
0.40
18277423--18277461
19
2.1
19
95
0
69
48
2
0
48
1.15
18277422--18277466
22
2.0
22
86
0
63
48
2
0
48
1.13
18277997--18278049
27
2.0
27
92
0
88
20
11
16
50
1.76
18282654--18282685
3
10.7
3
100
0
64
0
0
31
68
0.90
18283632--18283667
15
2.4
16
82
17
51
63
0
0
36
0.94
18284652--18284695
3
14.7
3
85
0
52
59
0
9
31
1.29
18285658--18285723
3
22.0
3
100
0
132
33
0
33
33
1.58
18285722--18285756
3
11.7
3
100
0
70
65
0
0
34
0.93
18286772--18286835
26
2.5
25
70
14
58
70
1
15
12
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18286856--18286909
20
2.8
20
73
18
60
75
0
12
11
1.04
18288224--18288250
3
9.0
3
100
0
54
33
0
0
66
0.92
18288934--18288979
19
2.3
20
88
3
67
26
28
21
23
1.99
18289308--18289354
12
4.1
11
82
12
51
12
2
4
80
0.94
18289420--18289686
66
4.3
63
87
8
351
50
8
10
31
1.65
18292404--18292431
1
28.0
1
100
0
56
100
0
0
0
0.00
18292458--18292486
11
2.5
12
94
5
51
79
0
20
0
0.74
18292839--18292867
6
5.0
6
91
8
51
86
0
13
0
0.58
18294071--18294935
42
21.0
41
92
5
1353
22
17
22
37
1.94
18294071--18294935
206
4.2
205
91
5
1346
22
17
22
37
1.94
18294071--18294935
248
3.5
248
95
2
1519
22
17
22
37
1.94
18294915--18294956
21
2.0
21
100
0
84
19
19
38
23
1.93
18294937--18295036
40
2.5
39
90
4
146
23
19
24
34
1.97
18295045--18295132
9
9.6
9
80
10
81
85
9
0
5
0.75
18295047--18295138
31
2.9
32
75
9
66
84
8
0
6
0.77
18295044--18295125
1
82.0
1
75
0
65
86
8
0
4
0.70
18295326--18295355
3
10.0
3
100
0
60
33
0
0
66
0.92
18295919--18295985
31
2.2
31
84
10
84
32
23
17
25
1.97
18296411--18296446
15
2.4
15
95
0
63
13
0
2
83
0.76
18296439--18296485
12
4.1
11
82
12
51
12
2
4
80
0.94
18296557--18297031
59
7.8
58
85
9
589
45
8
12
33
1.73
18298747--18298791
24
1.9
23
90
4
72
28
0
2
68
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18299376--18299429
3
18.0
3
92
0
90
68
1
0
29
1.00
18300890--18300943
26
2.2
25
83
12
67
35
7
9
48
1.63
18301282--18301349
29
2.2
32
84
7
88
39
0
7
52
1.29
18309078--18309138
30
2.0
30
90
0
95
49
1
6
42
1.38
18311495--18311551
10
5.5
10
75
8
51
12
0
61
26
1.31
18311490--18311551
32
1.9
33
90
3
99
11
0
62
25
1.28
18311894--18311927
14
2.3
15
90
5
52
32
0
0
67
0.91
18315080--18315129
6
8.3
6
88
0
73
18
4
46
32
1.67
18315080--18315129
24
2.1
24
92
0
82
18
4
46
32
1.67
18319048--18319167
6
20.0
6
74
0
87
64
11
0
23
1.32
18319567--18319597
16
1.9
16
93
0
53
64
0
0
35
0.94
18320582--18320620
2
19.5
2
100
0
78
51
0
0
48
1.00
18324126--18324158
2
16.5
2
93
0
57
48
0
0
51
1.00
18325890--18325914
4
6.2
4
100
0
50
24
0
0
76
0.80
18326319--18326348
2
15.0
2
100
0
60
50
0
0
50
1.00
18326491--18326520
2
15.0
2
100
0
60
50
0
0
50
1.00
18326826--18326860
2
17.5
2
100
0
70
48
0
0
51
1.00
18327032--18327092
25
2.4
25
100
0
122
34
14
11
39
1.82
18327843--18327901
30
2.0
30
86
6
84
45
6
15
32
1.72
18329557--18329601
23
1.9
24
90
4
74
57
0
4
37
1.19
18331800--18331853
3
18.0
3
100
0
108
66
0
0
33
0.92
18340180--18340217
10
3.6
11
86
10
53
39
2
5
52
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18343021--18343100
9
8.6
9
76
11
72
60
10
1
28
1.37
18343029--18343100
19
3.7
19
73
14
58
59
11
1
27
1.40
18343020--18343236
29
7.5
29
68
11
106
54
8
1
35
1.39
18343129--18343180
20
2.6
21
75
9
63
44
7
3
44
1.51
18343260--18343341
42
2.0
40
83
4
101
57
3
0
39
1.16
18343311--18343436
67
1.9
67
81
6
157
57
6
4
31
1.45
18343349--18343418
20
3.9
17
72
27
56
58
5
5
30
1.45
18343470--18343521
16
3.1
17
75
10
54
23
0
5
71
1.07
18343606--18343646
22
1.9
22
95
5
75
39
0
7
53
1.29
18343717--18343838
9
12.7
9
70
15
75
40
0
6
51
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126