genome.fa.s667.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  48  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9455902--9456102	69	2.9	68	86	4	260	35	18	12	33	1.89
9456047--9456134	42	2.1	42	86	0	122	37	21	10	30	1.87
9456539--9456579	11	3.9	10	87	6	55	9	2	2	85	0.78
9456752--9456792	20	2.0	20	86	9	57	12	4	4	78	1.07
9457269--9457312	11	4.3	11	86	13	67	15	0	0	84	0.63
9457267--9457305	7	5.7	7	81	6	53	15	0	0	84	0.62
9471373--9471430	19	3.0	20	80	10	66	34	12	22	31	1.91
9473591--9474079	145	3.4	144	79	5	529	40	12	14	32	1.83
9474632--9474903	121	2.2	121	86	0	373	33	17	15	33	1.91
9474834--9475071	33	7.2	33	89	0	341	33	21	14	30	1.94
9475646--9475747	37	2.6	38	81	6	107	31	11	20	36	1.89
9476787--9476828	17	2.5	17	76	3	50	7	16	0	76	1.00
9477329--9477403	6	11.8	6	75	18	55	4	14	0	81	0.83
9477368--9477393	7	3.7	7	100	0	52	11	11	0	76	1.01
9477328--9477406	39	2.0	39	85	9	108	3	13	0	82	0.81
9479951--9480021	30	2.4	30	95	0	124	26	11	29	32	1.91
9484560--9485033	146	3.3	142	79	6	461	38	14	15	31	1.87
9487865--9487901	18	2.1	18	90	5	58	27	2	5	64	1.28
9488148--9488187	17	2.5	16	88	8	55	47	2	2	47	1.29
9492577--9492609	10	3.3	10	100	0	66	48	12	0	39	1.40
9497234--9497663	215	2.0	215	95	0	781	32	16	14	37	1.88
9501188--9501235	21	2.3	21	81	0	60	18	20	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9502100--9502135	2	18.0	2	100	0	72	50	0	0	50	1.00
9502465--9502499	18	1.9	18	94	0	61	0	17	0	82	0.66
9503693--9503722	1	30.0	1	93	0	51	96	0	3	0	0.21
9504808--9504850	15	2.9	14	82	10	50	53	2	0	44	1.13
9504977--9505020	19	2.2	20	88	4	63	47	11	0	40	1.39
9505211--9505351	64	2.2	64	77	9	146	51	4	1	42	1.30
9505246--9505349	32	3.3	32	82	12	117	51	4	0	43	1.22
9505295--9505356	31	2.0	30	84	3	79	51	3	1	43	1.27
9505300--9505372	31	2.4	31	81	6	78	54	2	2	39	1.29
9507630--9507774	58	2.5	58	94	1	247	41	11	5	41	1.65
9507759--9507787	13	2.2	13	100	0	58	44	6	13	34	1.71
9507901--9507934	3	11.7	3	93	6	61	67	0	0	32	0.91
9508718--9508807	17	5.4	17	70	11	62	64	1	4	30	1.20
9508697--9508757	21	2.8	22	80	11	81	63	1	6	27	1.28
9508738--9508791	14	3.6	14	74	13	54	61	0	5	33	1.19
9508755--9508817	20	3.3	19	72	20	60	61	1	3	33	1.21
9508726--9508858	27	4.9	26	70	18	76	66	0	4	28	1.17
9508729--9508867	17	8.5	17	69	16	89	67	0	3	28	1.12
9508679--9508834	37	4.2	38	70	21	116	64	1	5	29	1.23
9508823--9508873	22	2.3	23	86	6	70	78	0	1	19	0.85
9508829--9508880	5	10.8	5	83	8	56	76	0	3	19	0.93
9509063--9509194	43	3.1	43	90	2	185	42	18	15	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9509171--9509215	23	2.0	23	100	0	90	44	26	11	17	1.82
9509127--9509261	67	2.0	67	94	0	234	42	24	14	18	1.87
9509194--9509321	44	2.9	45	90	3	206	40	25	16	17	1.90
9509090--9509305	111	2.0	110	89	0	333	42	23	14	18	1.88
9509247--9509423	43	4.1	41	76	7	122	36	24	16	22	1.94
9509291--9509423	43	3.1	41	77	8	133	34	24	17	24	1.96
9510439--9510500	13	4.6	13	81	15	81	8	14	0	77	0.98
9510425--9510506	28	2.9	28	81	15	98	8	15	0	75	1.03
9510425--9510490	20	3.0	22	82	6	73	9	15	0	75	1.03
9520963--9521187	60	3.8	58	79	6	256	38	14	5	41	1.69
9520967--9521190	118	1.9	120	85	4	312	38	13	5	41	1.69
9522094--9522187	43	2.2	42	84	7	127	63	2	5	28	1.27
9522120--9522181	20	3.4	17	77	16	52	66	1	4	27	1.21
9522103--9522248	21	6.8	20	72	17	96	63	2	4	29	1.26
9522204--9522247	13	3.6	12	82	11	54	63	0	2	34	1.07
9522242--9522294	14	3.6	14	79	7	52	75	5	1	16	1.08
9523055--9523092	19	2.0	20	84	5	51	55	0	2	42	1.14
9526524--9526564	22	1.9	22	85	5	57	34	4	12	48	1.62
9529376--9529413	21	1.9	20	89	10	60	31	21	0	47	1.51
9529409--9529453	22	2.0	23	83	12	58	33	26	4	35	1.77
9535065--9535155	37	2.4	37	89	5	130	31	19	8	39	1.83
9537582--9537690	42	2.6	42	84	5	132	44	12	15	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9538508--9538547	20	2.0	20	85	4	55	35	2	0	62	1.09
9546661--9546995	150	2.2	153	84	7	434	38	16	9	35	1.80
9561804--9561846	21	2.0	21	81	0	50	41	30	18	9	1.82
9568152--9568195	13	3.3	13	81	15	54	77	2	0	20	0.88
9568573--9568663	43	2.0	45	85	6	123	60	14	16	8	1.58
9568621--9568719	35	2.8	36	81	9	114	52	17	19	11	1.73
9568687--9568768	35	2.4	34	80	8	94	52	18	18	10	1.73
9569537--9569568	16	2.0	16	100	0	64	37	6	25	31	1.81
9570202--9570244	13	3.4	13	83	6	61	48	20	2	27	1.62
9570184--9570258	25	2.9	25	86	6	87	50	18	5	25	1.68
9570216--9570258	13	3.4	12	78	12	50	48	23	6	20	1.73
9570295--9570361	19	3.5	21	80	15	76	46	17	16	19	1.85
9571112--9571141	15	2.0	15	93	0	51	36	0	0	63	0.95
9575347--9575396	7	6.6	7	80	15	55	74	0	22	4	0.99
9575347--9575397	8	6.5	8	82	17	63	74	0	21	3	0.98
9575347--9575389	16	2.7	16	96	0	77	74	0	20	4	1.00
9576011--9576059	25	2.0	25	88	8	73	18	20	8	53	1.70
9576687--9576750	22	3.5	17	76	21	58	71	0	21	6	1.07
9576691--9576759	18	3.6	19	82	13	88	72	0	21	5	1.05
9576687--9576763	6	12.3	6	73	18	52	74	0	20	5	1.01
9576734--9576805	11	6.5	11	71	17	51	76	1	16	5	1.05
9576726--9576771	14	3.5	13	77	17	51	78	0	19	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9577999--9578067	33	2.1	33	81	5	77	31	17	20	30	1.95
9578066--9578657	33	18.0	33	69	10	140	34	16	15	33	1.90
9578018--9578246	100	2.3	101	80	4	268	34	17	16	31	1.92
9578093--9578870	32	23.8	32	70	13	248	35	17	15	32	1.91
9578162--9578310	65	2.3	65	89	4	221	32	14	16	36	1.89
9578324--9578459	67	2.0	67	80	5	150	33	16	14	34	1.90
9578451--9578701	65	3.8	65	73	7	177	38	18	13	29	1.89
9578779--9578866	31	2.7	31	86	8	115	39	13	15	30	1.87
9578193--9579028	32	25.5	33	69	14	238	35	16	15	31	1.91
9578975--9579051	34	2.4	34	85	10	99	38	14	18	28	1.89
9579239--9579307	10	6.5	10	69	18	50	82	10	1	5	0.89
9579237--9579322	15	6.4	13	77	11	68	81	11	2	4	0.93
9579237--9579322	29	2.9	28	79	5	91	81	11	2	4	0.93
9579593--9579653	27	2.3	27	80	2	70	59	13	11	16	1.62
9580181--9580254	35	2.1	35	85	5	96	62	9	10	17	1.54
9583331--9583421	36	2.6	36	79	10	98	31	14	21	31	1.93
9583374--9583442	35	2.0	35	88	0	102	28	8	27	34	1.87
9592983--9593300	19	17.3	19	70	14	93	45	15	11	26	1.81
9592984--9593075	36	2.5	38	78	10	109	53	15	5	26	1.63
9593135--9593188	25	2.2	25	86	0	72	38	14	14	31	1.87
9593007--9593337	149	2.2	149	80	2	378	45	15	11	27	1.81
9593221--9593281	17	3.6	17	69	8	52	39	16	16	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9593272--9593308	19	1.9	19	88	0	56	43	21	13	21	1.87
9593284--9593362	25	3.2	25	87	0	104	45	16	10	27	1.79
9593555--9593655	46	2.2	45	87	1	139	35	13	10	39	1.80
9593935--9593981	23	2.0	23	84	8	60	44	10	12	31	1.77
9597942--9597975	9	3.9	9	84	7	52	76	2	0	20	0.92
9598749--9598794	14	3.2	15	82	14	53	50	19	8	21	1.75
9606324--9606369	26	1.9	25	83	16	62	34	6	6	52	1.53
9608480--9608506	10	2.7	10	100	0	54	18	33	11	37	1.86
9612634--9612664	2	15.5	2	100	0	62	51	0	0	48	1.00
9620196--9620266	37	1.9	37	94	0	124	38	8	22	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126