genome.fa.s667.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  18  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4177694--4177727	14	2.4	14	100	0	68	38	14	23	23	1.92
4178222--4178284	27	2.3	27	75	5	74	57	3	0	39	1.15
4178283--4178415	20	6.8	19	71	13	85	56	5	3	34	1.40
4178283--4178402	10	12.4	9	70	14	62	57	5	2	34	1.36
4178302--4178402	39	2.6	38	79	13	107	58	5	2	32	1.37
4178279--4178445	20	8.6	20	71	19	70	55	4	3	37	1.37
4178491--4178539	20	2.5	20	86	6	64	53	12	0	34	1.39
4178828--4178889	17	3.4	19	76	10	58	74	6	3	16	1.16
4178883--4178954	36	2.0	35	84	7	92	69	1	4	25	1.14
4179147--4179204	11	5.6	11	74	10	52	34	5	6	53	1.50
4182177--4182469	121	2.4	119	76	9	290	34	15	11	38	1.83
4182870--4183295	209	2.0	209	80	5	468	34	15	14	35	1.88
4182684--4183629	481	2.0	478	80	4	1089	36	14	12	36	1.84
4183659--4183683	12	2.1	12	100	0	50	36	0	8	56	1.29
4183609--4183760	64	2.4	64	82	5	164	36	7	9	46	1.66
4183623--4183760	65	2.2	63	81	5	161	35	8	10	45	1.69
4186979--4187024	16	3.0	16	84	12	69	43	0	0	56	0.99
4186984--4187028	14	3.3	13	81	9	54	40	0	0	60	0.97
4188018--4188047	12	2.4	13	94	5	53	23	0	0	76	0.78
4190335--4190561	126	1.8	126	94	0	400	32	16	14	36	1.89
4192235--4192372	68	2.0	68	81	0	159	27	26	18	27	1.98
4193869--4194022	84	1.8	84	91	0	254	33	21	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199856--4199894	11	3.5	11	82	6	51	53	0	0	46	1.00
4199857--4199894	12	3.2	12	81	7	51	55	0	0	44	0.99
4199743--4200055	10	32.6	9	67	19	100	53	3	1	40	1.29
4207910--4208018	34	3.2	33	75	7	94	33	16	14	35	1.89
4208184--4208265	40	2.0	40	84	9	105	32	14	12	40	1.83
4209103--4209150	19	2.6	18	80	6	60	16	6	0	77	0.97
4209103--4209153	24	2.1	24	89	7	77	17	5	0	76	0.98
4209103--4209157	19	2.9	18	75	21	51	18	5	0	76	0.97
4209176--4209210	14	2.3	15	90	9	54	37	0	2	60	1.12
4209298--4209336	3	13.3	3	94	5	71	69	0	0	30	0.89
4209690--4209715	2	13.0	2	100	0	52	50	0	0	50	1.00
4209757--4209789	15	2.1	16	88	5	50	51	0	9	39	1.34
4210175--4210228	25	2.2	25	89	0	81	53	5	3	37	1.42
4210182--4210237	25	2.2	26	96	3	105	51	3	3	41	1.36
4212961--4212992	3	10.7	3	93	0	55	31	0	3	65	1.08
4222818--4223047	103	2.2	104	92	1	383	30	22	9	37	1.86
4225711--4225737	6	4.5	6	100	0	54	0	29	0	70	0.88
4233082--4233123	19	2.2	20	86	4	59	21	7	2	69	1.25
4234301--4234398	10	9.7	9	73	24	56	8	2	10	79	1.01
4234308--4234400	22	4.3	21	73	13	82	8	2	10	78	1.04
4234520--4234635	35	3.3	35	67	12	85	54	10	17	18	1.70
4234915--4235035	34	3.5	33	75	7	91	50	7	20	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4235009--4235133	35	3.6	33	76	12	101	54	11	17	16	1.71
4234845--4235109	138	1.9	139	82	5	331	50	8	20	20	1.73
4236443--4236487	16	2.8	16	93	0	81	13	4	0	82	0.82
4236443--4236510	8	8.0	8	79	12	73	10	4	2	82	0.92
4236454--4236517	14	4.4	14	78	6	56	7	4	4	82	0.93
4239450--4239535	42	2.0	43	86	6	122	41	8	13	36	1.75
4239644--4239722	40	1.9	42	84	5	108	44	11	12	31	1.78
4244803--4244837	16	2.2	16	100	0	70	22	22	11	42	1.85
4246009--4246062	23	2.4	23	76	11	60	48	1	3	46	1.30
4252969--4253006	20	1.9	20	94	0	67	84	5	2	7	0.86
4257297--4257323	5	5.4	5	100	0	54	18	0	0	81	0.69
4261311--4261340	14	2.2	14	94	5	53	6	10	0	83	0.81
4262112--4262197	42	2.0	46	84	13	119	39	2	3	54	1.30
4269466--4269492	14	1.9	14	100	0	54	48	0	0	51	1.00
4270713--4270755	12	3.6	13	85	14	58	25	0	0	74	0.82
4270717--4270755	16	2.5	15	88	12	53	25	0	0	74	0.82
4275033--4275069	2	20.0	2	84	15	53	45	0	54	0	1.00
4279697--4279740	19	2.2	20	88	4	63	52	2	2	43	1.26
4279932--4279962	14	2.3	14	94	5	55	35	0	16	48	1.46
4280069--4280095	6	4.5	6	100	0	54	62	0	0	37	0.95
4285660--4285720	18	3.5	18	91	4	90	52	8	11	27	1.66
4285672--4285724	18	2.9	18	97	0	97	54	5	11	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4286982--4287025	21	2.0	22	82	4	54	61	9	11	18	1.55
4292478--4292512	17	2.1	17	89	10	54	54	0	0	45	0.99
4292498--4292545	19	2.5	20	75	3	53	47	0	6	45	1.27
4296466--4296501	2	18.0	2	100	0	72	0	50	0	50	1.00
4303598--4303649	27	1.9	27	92	0	86	30	28	11	28	1.92
4308856--4308887	15	2.1	15	94	0	55	12	0	21	65	1.25
4308805--4308956	69	2.2	69	98	1	295	18	0	24	57	1.41
4308805--4308914	33	3.2	33	64	26	84	20	0	24	54	1.45
4308925--4308962	15	2.5	15	91	0	58	10	0	23	65	1.23
4310263--4310320	18	3.1	18	73	9	53	31	3	6	58	1.41
4312611--4312707	48	2.0	48	100	0	194	36	26	4	32	1.76
4312620--4312720	48	2.1	48	84	0	130	36	29	3	29	1.76
4313033--4313191	34	4.7	34	72	13	105	38	12	10	37	1.78
4313434--4313472	20	2.0	20	89	0	60	23	5	20	51	1.67
4326349--4326404	23	2.4	24	73	8	62	55	1	14	28	1.49
4332522--4332555	16	2.1	16	88	5	50	47	0	0	52	1.00
4332527--4332577	25	2.0	26	81	11	61	50	0	1	47	1.12
4335521--4335546	2	13.0	2	100	0	52	50	0	0	50	1.00
4345274--4345306	2	16.5	2	93	0	57	48	3	0	48	1.17
4349302--4349930	157	4.0	149	88	9	827	31	7	24	35	1.84
4349351--4349930	311	1.9	301	94	5	1016	31	7	24	36	1.84
4350212--4350237	6	4.3	6	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4357074--4357116	17	2.5	17	84	3	50	34	4	9	51	1.55
4360799--4360836	14	2.8	14	96	4	69	47	0	10	42	1.38
4360951--4361009	26	2.3	26	88	2	84	52	0	1	45	1.10
4360995--4361071	18	4.4	18	71	19	56	51	1	2	44	1.23
4361106--4361167	26	2.4	27	81	13	76	43	0	4	51	1.23
4361094--4361385	18	16.7	17	66	23	103	41	2	1	55	1.20
4361202--4361267	30	2.2	30	78	7	73	43	0	1	54	1.09
4361093--4361337	36	6.7	37	70	18	149	41	1	1	55	1.19
4361095--4361385	23	12.5	23	70	17	108	41	2	1	54	1.20
4361095--4361385	49	6.0	49	70	20	173	41	2	1	54	1.20
4362492--4362539	24	2.0	24	95	0	87	35	25	4	35	1.75
4378026--4378069	20	2.1	21	95	4	81	29	18	6	45	1.75
4380622--4380671	22	2.3	21	86	3	64	36	4	2	58	1.29
4382093--4382125	14	2.2	16	89	10	52	36	0	0	63	0.95
4385109--4385187	31	2.6	31	73	13	83	41	2	17	37	1.63
4385398--4385473	31	2.5	32	77	12	88	44	1	15	38	1.55
4390476--4390539	33	1.9	34	84	9	87	40	1	6	51	1.36
4390639--4390692	22	2.5	20	77	16	54	55	0	7	37	1.28
4390660--4390714	25	2.2	25	78	15	60	56	1	5	36	1.33
4390654--4390719	26	2.7	25	81	9	75	54	1	6	37	1.34
4399299--4399336	18	2.1	18	90	5	58	68	2	0	28	1.03
4399870--4399928	29	2.1	29	93	3	102	32	18	6	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4399980--4400111	30	4.4	30	76	4	108	40	5	18	35	1.74
4400063--4400117	29	1.9	28	85	3	74	47	7	14	30	1.71
4401661--4401706	15	3.0	15	81	6	56	78	4	15	2	1.01
4404510--4404712	112	1.8	109	84	3	271	23	13	8	55	1.65
4404594--4404696	50	2.2	47	83	10	129	26	11	6	55	1.60
4406021--4406067	12	3.7	13	83	10	53	76	4	2	17	1.04
4406782--4407203	21	19.0	21	72	12	254	39	13	8	38	1.75
4406782--4406974	65	3.0	64	82	6	237	43	15	7	34	1.74
4406785--4407228	46	9.9	45	83	8	376	39	12	8	39	1.74
4406782--4407240	137	3.4	138	79	8	384	38	12	8	39	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126