genome.fa.s667.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  52  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10279282--10279367	33	2.7	32	78	7	93	44	8	5	41	1.58
10279788--10279831	16	2.7	15	80	13	52	43	0	2	54	1.12
10280328--10280489	63	2.6	62	76	2	166	33	4	23	38	1.75
10284687--10285306	333	1.9	333	84	3	854	29	24	18	27	1.98
10292145--10292224	40	2.0	40	95	0	142	17	11	16	55	1.70
10296811--10296838	3	9.3	3	100	0	56	67	0	0	32	0.91
10298341--10298381	20	2.0	21	85	4	57	53	12	19	14	1.72
10304635--10304673	20	2.0	20	84	0	51	53	10	7	28	1.62
10311789--10311832	22	2.0	23	86	4	63	56	9	2	31	1.43
10312752--10312786	15	2.2	16	90	5	54	14	22	0	62	1.31
10318545--10318585	21	2.0	21	95	0	73	36	7	9	46	1.65
10322915--10322954	21	1.9	21	89	0	62	47	5	7	40	1.54
10328293--10328322	6	4.8	6	95	4	51	13	0	0	86	0.57
10334497--10334529	12	2.8	12	95	0	57	51	0	18	30	1.46
10339549--10339673	26	4.9	25	73	13	96	49	35	0	15	1.45
10339579--10339674	13	6.8	15	68	30	52	51	34	0	14	1.43
10339542--10339673	7	20.4	7	74	14	97	49	36	0	14	1.44
10339554--10339673	19	6.2	19	80	7	118	49	35	0	15	1.45
10340083--10340123	22	1.9	22	85	14	59	48	7	4	39	1.52
10341527--10341792	37	7.1	37	79	5	223	35	21	8	35	1.83
10344313--10344359	13	3.7	13	75	13	53	12	0	36	51	1.40
10344306--10344380	6	11.4	7	70	18	54	13	1	37	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10348322--10348476	78	2.0	78	84	0	202	39	18	10	32	1.84
10348652--10348693	18	2.3	18	84	12	50	73	2	19	4	1.12
10349992--10351039	419	2.6	407	84	6	1290	38	10	19	31	1.85
10351733--10351770	19	2.0	19	89	0	58	36	47	0	15	1.46
10351854--10351890	14	2.8	13	84	8	56	27	27	8	37	1.84
10352755--10352794	8	4.6	9	90	9	57	80	0	5	15	0.88
10353816--10354039	35	6.3	35	74	9	166	32	26	11	30	1.91
10353832--10353978	70	2.1	71	83	8	185	30	27	10	31	1.90
10354015--10354087	37	2.0	37	86	5	103	30	19	12	38	1.88
10355902--10355939	10	3.8	10	92	0	67	84	0	15	0	0.63
10355901--10355941	18	2.2	19	91	4	66	82	0	17	0	0.66
10357102--10357143	21	2.0	22	85	4	59	71	0	26	2	0.98
10362864--10362915	23	2.2	24	89	3	79	30	15	13	40	1.86
10363041--10363092	22	2.4	21	84	9	61	34	23	7	34	1.83
10364212--10364250	16	2.4	17	83	12	55	48	7	0	43	1.31
10366532--10366559	3	9.3	3	100	0	56	67	0	0	32	0.91
10369262--10369347	30	2.8	30	75	8	84	44	3	16	36	1.65
10374989--10375023	11	3.0	11	88	12	52	51	0	0	48	1.00
10374989--10375025	13	3.1	12	92	7	58	51	0	0	48	1.00
10375068--10375100	13	2.4	14	90	5	50	75	0	9	15	1.03
10377531--10377583	25	2.1	25	89	0	79	39	13	11	35	1.80
10378813--10379196	183	2.1	183	82	1	464	31	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10378699--10379565	182	4.8	181	75	7	542	31	15	14	38	1.87
10379309--10379477	60	2.9	58	75	10	164	29	13	14	42	1.84
10379371--10379596	125	1.8	123	81	5	285	31	14	14	38	1.87
10379369--10379692	125	2.6	123	77	8	282	31	15	13	39	1.86
10387833--10387892	21	2.9	21	97	0	111	41	10	13	35	1.78
10393335--10393767	26	16.7	25	71	10	187	35	20	18	25	1.95
10394396--10394440	20	2.2	20	85	14	58	68	6	15	8	1.36
10396505--10396542	18	2.1	18	95	0	67	34	31	0	34	1.58
10401072--10401205	69	2.0	68	84	1	178	34	18	20	26	1.96
10407474--10407567	48	2.0	48	89	0	143	30	26	5	37	1.79
10408982--10409014	17	1.9	17	93	0	57	36	18	12	33	1.88
10429284--10429313	12	2.5	12	94	0	51	63	23	10	3	1.40
10429515--10429552	13	3.0	13	80	7	51	81	0	7	10	0.87
10429522--10429555	16	2.1	16	88	5	50	76	0	8	14	1.01
10429747--10429801	22	2.5	21	80	11	74	80	9	7	3	1.02
10429748--10429804	23	2.5	23	85	2	80	80	7	8	3	1.00
10430503--10430581	29	2.7	28	75	19	72	55	1	5	37	1.30
10432231--10432327	13	7.4	13	70	15	65	50	23	6	19	1.70
10432231--10432335	52	2.0	52	83	12	135	50	23	5	20	1.69
10432225--10432327	27	3.9	26	73	19	88	50	22	5	21	1.70
10432269--10432335	13	5.2	13	75	5	55	50	25	4	19	1.66
10432358--10432410	19	2.8	19	100	0	106	52	20	11	15	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10432959--10433271	155	2.0	155	93	0	527	38	9	11	39	1.74
10451381--10451419	13	3.0	13	92	0	69	58	0	0	41	0.98
10453910--10454010	34	3.0	32	85	5	121	42	8	12	35	1.75
10453928--10454032	34	3.1	34	83	0	129	44	11	11	32	1.76
10454822--10454886	27	2.4	27	82	7	87	35	13	4	46	1.64
10457411--10457455	17	2.5	18	82	17	58	22	2	11	64	1.36
10457563--10457594	6	5.5	6	92	7	57	65	15	0	18	1.27
10457594--10457644	19	2.7	19	90	0	75	54	9	7	27	1.60
10459556--10459589	9	3.8	9	88	0	50	70	20	0	8	1.13
10460126--10460239	34	3.4	34	82	2	131	35	14	21	28	1.92
10463562--10463613	20	2.6	20	84	0	68	46	1	1	50	1.23
10463638--10463675	18	2.1	19	85	5	51	60	5	7	26	1.46
10469550--10469597	24	2.0	24	100	0	96	33	20	8	37	1.83
10479548--10479605	17	3.5	17	76	4	57	82	3	5	8	0.92
10480877--10480921	15	3.0	15	83	6	56	15	17	6	60	1.56
10484045--10484085	2	20.5	2	94	0	73	51	0	2	46	1.14
10487006--10487058	25	2.1	25	82	6	63	37	5	5	50	1.50
10489291--10489321	16	1.9	16	93	0	53	45	9	12	32	1.75
10490664--10491159	142	3.4	142	79	7	423	41	13	12	32	1.82
10505014--10505068	22	2.4	24	82	11	71	40	0	3	56	1.17
10506427--10506475	16	3.0	17	88	5	66	55	6	12	26	1.60
10506481--10506531	23	2.2	24	82	6	61	58	7	9	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507303--10507673	143	2.6	141	83	5	426	33	12	13	40	1.83
10507413--10507702	142	2.0	143	84	4	388	35	14	12	38	1.83
10507434--10507742	142	2.2	142	81	4	345	34	13	11	39	1.81
10509158--10509199	12	3.3	12	87	9	57	54	30	0	14	1.40
10509158--10509269	13	8.3	13	71	18	52	50	34	0	13	1.48
10509201--10509288	20	4.4	20	85	0	122	50	37	1	11	1.46
10509290--10509357	19	3.7	19	75	18	63	50	33	0	16	1.45
10509177--10509357	7	27.4	7	68	18	68	49	35	1	13	1.49
10509706--10509763	16	3.5	16	75	9	53	44	39	3	12	1.58
10511455--10511495	11	4.2	10	82	14	50	82	2	7	7	0.91
10518083--10518126	21	2.1	21	95	0	79	25	18	4	52	1.64
10518870--10518907	20	1.9	20	89	10	60	47	44	0	7	1.32
10518915--10518985	19	3.8	19	80	9	74	50	30	5	12	1.63
10519345--10519392	16	2.9	16	84	6	60	50	39	0	10	1.37
10519831--10519865	17	2.1	17	88	0	52	74	0	2	22	0.95
10522816--10522855	20	2.0	21	85	5	55	45	25	10	20	1.81
10524482--10524531	20	2.5	19	76	23	57	74	6	10	10	1.23
10525547--10525600	12	4.5	12	78	15	58	7	0	44	48	1.31
10525549--10525613	25	2.7	24	88	9	96	9	0	41	49	1.35
10525549--10525607	11	5.0	11	80	15	64	8	0	42	49	1.33
10525640--10525680	18	2.3	18	91	0	64	14	7	31	46	1.72
10525865--10525924	20	3.0	18	83	14	57	13	0	38	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525890--10525950	20	3.0	20	77	13	63	18	1	37	42	1.60
10527847--10527898	10	5.2	10	73	0	50	42	15	7	34	1.75
10527850--10527907	20	2.9	20	86	0	89	41	10	8	39	1.70
10528714--10528769	26	2.2	26	96	3	105	60	7	10	21	1.53
10531092--10531118	2	13.5	2	100	0	54	51	0	48	0	1.00
10531705--10531739	16	2.2	16	89	0	52	17	0	2	80	0.84
10531705--10531737	9	3.8	9	88	4	50	18	0	3	78	0.87
10535210--10535248	19	2.1	19	85	4	53	12	5	10	71	1.28
10535181--10535282	52	1.9	54	86	9	147	16	9	8	64	1.47
10535262--10535324	22	2.8	22	70	4	63	19	6	12	61	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126