genome.fa.s667.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  60  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12147823--12147980	44	3.6	44	80	4	158	44	13	15	26	1.84
12147969--12147993	13	1.9	13	100	0	50	40	8	20	32	1.81
12147927--12148036	56	2.0	56	92	0	184	47	12	11	28	1.77
12147984--12148181	43	4.6	43	79	1	207	47	15	9	27	1.75
12147886--12148080	99	2.0	101	80	6	227	46	14	12	26	1.80
12147984--12148174	87	2.2	86	83	2	222	49	14	8	27	1.72
12149193--12149238	17	2.7	16	87	9	65	6	13	0	80	0.89
12149193--12149239	18	2.7	17	90	6	76	6	12	0	80	0.88
12159235--12159398	85	1.9	85	85	2	222	29	15	21	32	1.95
12161575--12161618	15	2.7	17	83	16	58	77	4	0	18	0.94
12161575--12161621	22	2.1	22	84	7	60	78	4	0	17	0.90
12162743--12162775	14	2.3	15	89	5	50	66	6	3	24	1.28
12168789--12168880	14	7.2	13	69	18	52	73	2	3	20	1.07
12168815--12168880	20	3.6	18	75	24	66	75	1	3	19	1.01
12170727--12170943	58	3.7	59	88	6	316	34	12	7	45	1.71
12171510--12171566	12	4.8	12	76	4	53	54	17	0	28	1.43
12171857--12171938	42	2.0	41	85	7	112	65	3	4	25	1.29
12171912--12172078	4	42.0	4	66	16	55	63	2	2	31	1.22
12171958--12172085	18	6.5	20	69	20	83	61	3	2	32	1.24
12171914--12172019	42	2.5	41	83	6	115	62	2	3	31	1.27
12172031--12172077	13	3.6	14	85	5	55	63	0	2	34	1.06
12172069--12172157	29	3.0	29	78	1	79	76	6	2	14	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12172087--12172151	15	4.6	14	79	11	53	78	6	1	13	1.01
12172069--12172136	22	3.1	22	78	14	70	73	4	2	19	1.13
12172104--12172151	17	2.7	18	80	3	53	81	6	0	12	0.87
12172335--12172589	41	6.1	41	83	8	257	38	20	14	26	1.90
12173539--12173607	29	2.3	28	79	18	77	8	11	0	79	0.93
12178258--12178640	57	6.7	57	85	5	425	36	13	6	43	1.70
12178257--12178632	113	3.3	112	85	8	447	36	14	6	42	1.71
12178658--12178764	5	21.6	5	70	14	62	76	1	5	15	1.06
12178657--12178743	31	2.9	29	81	11	104	78	2	5	13	1.03
12178654--12178760	54	1.9	56	82	14	134	76	1	6	14	1.07
12178670--12178727	16	3.6	17	75	11	52	77	3	6	12	1.09
12178657--12178739	30	2.8	30	83	8	98	78	2	6	13	1.04
12178658--12178750	6	15.5	6	70	19	52	78	2	5	13	1.02
12179064--12179092	14	2.0	15	93	6	51	0	27	0	72	0.85
12179808--12179895	6	14.2	6	71	13	63	76	2	2	19	1.01
12179808--12179869	16	3.8	16	74	18	56	77	1	1	19	0.94
12179810--12179896	13	6.3	13	72	17	68	77	2	2	18	0.99
12179850--12179903	12	4.3	12	77	13	56	77	1	3	16	1.00
12186117--12186528	58	7.1	58	84	6	448	37	13	6	42	1.70
12186115--12186528	175	2.4	172	83	9	491	37	13	6	42	1.70
12186529--12186592	27	2.4	28	82	10	80	75	0	3	21	0.95
12186537--12186576	11	3.7	11	86	6	64	77	0	2	20	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12186519--12186579	17	3.6	18	75	16	51	73	0	4	21	1.01
12186537--12186576	21	1.9	21	100	0	80	77	0	2	20	0.88
12186537--12186584	11	4.4	11	78	7	53	79	0	2	18	0.84
12186604--12186639	3	12.0	3	93	0	63	66	2	0	30	1.06
12187560--12187725	4	41.5	4	66	17	53	63	2	3	30	1.24
12187507--12187615	42	2.7	41	81	8	107	64	4	4	26	1.33
12187561--12187732	7	24.3	7	65	21	58	63	2	4	30	1.25
12187561--12187732	10	16.5	10	69	22	81	63	2	4	30	1.25
12187590--12187670	42	1.9	42	87	0	117	59	3	4	32	1.36
12187590--12187659	22	3.3	20	75	15	61	60	4	4	31	1.36
12187746--12187799	6	8.7	6	88	11	56	81	5	0	12	0.85
12187745--12187794	19	2.7	18	84	9	64	82	4	0	14	0.82
12192922--12193553	326	1.9	326	90	0	1012	28	19	11	40	1.86
12196115--12196172	29	2.0	29	100	0	116	24	34	3	37	1.72
12197039--12197069	15	2.1	14	94	5	53	90	9	0	0	0.46
12200405--12200686	153	1.8	153	90	0	456	42	7	7	42	1.61
12203149--12203196	22	2.2	22	85	7	62	47	6	4	41	1.48
12203159--12203206	22	2.2	22	88	7	71	43	6	8	41	1.60
12203268--12203322	22	2.5	22	73	5	58	58	9	1	30	1.40
12203376--12203452	22	3.6	21	83	11	86	51	2	9	36	1.47
12210993--12211017	7	3.6	7	100	0	50	12	0	0	88	0.53
12216594--12216664	1	71.0	1	80	0	79	90	0	9	0	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12216590--12216680	24	4.0	23	80	11	89	84	0	14	1	0.68
12217313--12217405	48	1.9	48	82	0	114	36	11	27	23	1.90
12217727--12217796	21	3.3	21	96	4	124	40	10	11	38	1.75
12218160--12218388	42	5.5	42	85	3	275	27	17	13	41	1.87
12218160--12218380	84	2.6	83	87	4	309	27	17	13	41	1.87
12218672--12218711	13	3.2	12	83	13	53	20	2	0	77	0.88
12219535--12219581	24	1.9	24	82	4	58	44	4	10	40	1.59
12229119--12229168	24	2.1	24	96	0	91	28	14	20	38	1.91
12236767--12236836	1	70.0	1	79	0	77	90	0	10	0	0.47
12236763--12236836	9	7.8	10	85	8	93	89	0	10	0	0.49
12236762--12236835	24	3.2	23	85	14	107	87	0	12	0	0.53
12236763--12236836	25	3.1	24	83	11	98	89	0	10	0	0.49
12236762--12236852	38	2.4	37	80	12	103	83	0	15	1	0.70
12236769--12236836	22	3.2	22	84	15	90	89	0	10	0	0.48
12237898--12237967	21	3.3	21	96	4	124	40	10	11	38	1.75
12238331--12238558	42	5.5	42	84	3	266	27	17	13	41	1.87
12238331--12238550	84	2.6	83	87	4	300	27	17	13	41	1.87
12239685--12239731	24	1.9	24	82	4	58	44	4	10	40	1.59
12239819--12239855	13	3.2	12	85	14	51	78	5	0	16	0.93
12248956--12249007	24	2.2	24	96	0	95	26	15	21	36	1.93
12255799--12255939	49	3.0	48	79	12	193	43	0	7	48	1.35
12255801--12255939	44	2.9	47	71	16	135	43	0	7	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12255866--12255929	21	3.2	21	62	20	55	45	0	9	45	1.36
12255848--12255930	39	2.1	40	84	6	116	43	0	8	48	1.33
12258498--12258560	32	2.0	32	93	0	108	57	6	6	30	1.49
12259838--12259879	2	21.0	2	95	0	75	52	0	0	47	1.00
12263634--12263921	64	4.7	58	80	10	333	39	12	6	40	1.69
12263636--12263943	58	5.1	57	76	15	264	40	12	7	40	1.70
12263941--12263990	5	9.4	5	85	12	64	82	0	2	16	0.77
12263940--12264085	6	24.8	6	74	13	65	73	2	2	21	1.09
12263940--12263996	22	2.6	21	86	10	78	80	0	3	15	0.84
12263933--12263987	28	2.0	28	92	0	92	80	0	5	14	0.89
12264022--12264056	3	11.7	3	93	0	61	68	2	0	28	1.04
12264483--12264522	19	2.1	19	85	0	53	47	30	2	20	1.63
12264846--12264923	20	3.8	20	83	6	102	64	0	5	30	1.15
12264839--12265007	4	43.5	4	69	15	74	65	1	3	30	1.17
12264852--12265103	14	18.9	13	77	15	130	70	1	2	25	1.09
12264852--12265081	6	35.2	6	76	15	77	70	1	2	25	1.08
12264840--12265007	42	4.0	43	78	12	147	64	1	3	30	1.17
12265015--12265105	6	14.7	6	91	4	146	81	1	1	16	0.81
12265279--12265562	42	6.6	43	85	2	349	41	20	14	23	1.89
12265326--12265619	85	3.5	85	86	5	361	41	20	14	23	1.89
12266646--12266708	10	7.3	9	78	18	55	7	9	3	79	1.04
12276516--12276576	18	3.2	18	66	20	52	45	0	8	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12276504--12276578	39	1.9	39	100	0	150	44	0	8	48	1.32
12284647--12284824	63	2.9	60	82	10	220	39	11	6	42	1.67
12284541--12284842	63	5.1	59	73	15	212	39	12	6	40	1.70
12284842--12284908	5	12.4	5	84	12	80	79	0	1	19	0.82
12284840--12284914	34	2.2	34	86	9	109	78	0	2	18	0.86
12285801--12285913	42	2.8	40	79	11	104	65	0	6	27	1.22
12285842--12285889	17	2.8	16	81	9	51	66	0	4	29	1.10
12285843--12285992	4	38.8	4	74	12	86	65	0	3	30	1.14
12285868--12286001	28	4.8	27	76	12	112	65	1	2	29	1.16
12285844--12286001	38	4.1	37	76	16	137	65	1	3	30	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126