genome.fa.s667.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  63  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12794446--12794480	18	1.9	18	88	0	52	2	25	11	60	1.45
12798223--12798267	21	2.1	21	100	0	90	33	17	11	37	1.85
12801572--12801607	17	2.1	17	89	0	54	30	5	0	63	1.17
12827327--12827364	19	2.0	20	85	10	53	31	15	7	44	1.75
12828088--12828112	12	2.1	12	100	0	50	24	24	28	24	2.00
12835860--12835953	30	3.1	30	80	4	109	48	6	8	36	1.59
12842171--12842195	10	2.5	10	100	0	50	24	0	8	68	1.16
12844120--12844165	12	3.2	15	79	20	53	73	8	0	17	1.07
12844119--12844171	20	2.6	20	84	3	61	73	9	0	16	1.08
12845331--12845390	26	2.3	28	81	18	76	71	1	0	26	0.95
12845345--12845385	15	2.9	15	78	7	50	78	0	0	21	0.76
12845332--12845389	25	2.2	26	85	11	75	74	1	0	24	0.92
12845830--12845872	23	1.9	23	85	4	61	72	2	0	25	0.97
12847611--12847686	13	5.8	13	73	13	57	31	0	1	67	0.99
12848284--12848332	25	2.0	25	84	8	64	65	0	0	34	0.93
12848284--12848340	13	4.3	14	74	19	50	64	0	0	35	0.93
12862042--12862080	12	3.2	12	85	7	53	41	0	0	58	0.98
12865645--12865697	20	2.6	20	87	3	70	73	7	0	18	1.06
12867495--12867540	24	1.9	24	82	8	58	73	0	2	23	0.94
12869176--12869258	40	2.1	40	97	0	157	32	7	14	45	1.72
12874169--12874200	16	1.9	17	93	6	57	68	3	0	28	1.04
12881698--12881733	17	2.1	17	89	0	54	30	5	0	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12883935--12884037	29	3.5	29	78	2	107	45	2	11	39	1.56
12901776--12901880	30	3.5	29	72	10	86	39	11	2	46	1.55
12901777--12901869	30	3.1	29	75	4	87	39	9	3	47	1.53
12903212--12903419	108	2.0	104	86	5	292	28	14	18	38	1.90
12903485--12903523	12	3.2	12	89	10	62	64	0	0	35	0.94
12906468--12906645	87	2.0	92	94	5	321	34	13	9	42	1.77
12911769--12911800	16	1.9	17	93	6	57	28	0	3	68	1.04
12916416--12916498	40	2.1	40	97	0	157	45	14	7	32	1.72
12917530--12917570	20	2.0	21	85	4	57	48	0	0	51	1.00
12924483--12924684	102	2.0	102	85	5	273	27	15	19	37	1.92
12925531--12925561	2	15.5	2	93	0	53	48	0	3	48	1.17
12937706--12937785	36	2.1	39	93	6	139	45	15	7	32	1.74
12938814--12938854	20	2.0	21	85	4	57	48	0	0	51	1.00
12939445--12939515	13	5.5	13	69	12	56	66	0	0	33	0.92
12939473--12939513	21	1.9	22	85	5	57	65	0	0	34	0.93
12942759--12942844	20	4.0	20	72	16	73	24	2	6	66	1.28
12942770--12942865	46	2.1	46	100	0	192	28	4	6	61	1.39
12945678--12945724	18	2.6	18	86	3	58	29	0	0	70	0.88
12951305--12951408	29	3.5	29	75	7	93	39	11	2	46	1.55
12957265--12957297	2	16.5	2	100	0	66	48	0	0	51	1.00
12957448--12957483	17	2.1	17	89	0	54	30	5	0	63	1.17
12957966--12958002	12	3.2	12	88	11	60	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12959603--12959706	30	3.5	29	76	5	100	46	2	10	40	1.53
12965363--12965562	100	2.0	100	99	0	391	36	10	10	43	1.72
12966509--12966548	20	2.0	20	90	5	62	57	0	0	42	0.98
12979489--12979549	31	2.0	31	87	12	90	54	0	0	45	1.00
12979510--12979596	19	4.8	18	68	13	61	56	0	0	43	0.99
12987699--12987725	4	6.8	4	100	0	54	77	22	0	0	0.76
12987996--12988099	30	3.5	29	70	17	79	40	10	2	46	1.53
12989700--12989738	12	3.2	12	82	10	53	61	0	0	38	0.96
12990222--12990257	17	2.1	17	89	0	54	63	0	5	30	1.17
12990408--12990440	2	16.5	2	100	0	66	51	0	0	48	1.00
12992638--12992704	29	2.4	29	82	7	86	56	1	0	41	1.08
12992763--12992910	38	3.8	40	74	17	114	45	0	0	53	1.10
12992825--12992886	19	3.3	19	69	13	56	45	0	1	53	1.10
13001021--13001063	15	2.7	15	82	17	52	55	0	2	41	1.12
13006334--13006362	15	1.9	15	100	0	58	20	6	0	72	1.07
13006775--13006974	100	2.0	100	95	0	355	44	10	10	35	1.71
13016812--13016843	16	2.0	16	93	0	55	15	0	0	84	0.63
13018441--13018647	108	1.9	105	85	4	281	28	13	18	39	1.89
13019293--13019328	17	2.1	17	89	0	54	63	0	5	30	1.17
13026844--13026875	16	1.9	17	93	6	57	28	0	3	68	1.04
13031752--13031834	40	2.1	40	97	0	157	45	14	7	32	1.72
13032834--13032870	13	2.6	14	87	12	58	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13032856--13032908	20	2.5	22	81	9	65	47	0	0	52	1.00
13033502--13033554	24	2.3	22	87	6	70	64	0	0	35	0.94
13033502--13033571	22	3.0	24	78	14	76	61	0	0	38	0.96
13038314--13038344	2	15.5	2	93	0	53	48	3	0	48	1.17
13038495--13038530	17	2.1	17	89	0	54	30	5	0	63	1.17
13040704--13040805	30	3.4	30	75	11	93	45	3	11	39	1.59
13046463--13046661	99	2.0	100	98	1	382	36	10	10	43	1.72
13058996--13059036	20	2.0	20	100	0	82	14	19	31	34	1.92
13065362--13065426	27	2.6	25	80	7	69	43	1	0	55	1.09
13065389--13065431	15	2.8	15	89	3	59	46	2	0	51	1.13
13065415--13065477	23	2.6	24	82	7	83	57	1	1	39	1.18
13070539--13070581	21	2.0	22	86	8	63	32	2	0	65	1.06
13072644--13072686	4	10.8	4	89	0	59	27	18	0	53	1.45
13074336--13074393	20	2.8	21	82	10	57	53	0	1	44	1.10
13074358--13074407	14	3.7	14	76	17	52	60	0	0	40	0.97
13074422--13074452	16	1.9	16	93	0	53	41	0	3	54	1.16
13074418--13074485	22	3.1	22	72	8	75	45	0	2	51	1.16
13074876--13074911	17	2.1	17	89	0	54	30	5	0	63	1.17
13085563--13085634	22	3.3	22	70	18	69	59	4	5	30	1.39
13085566--13085657	46	2.1	46	92	8	156	61	5	4	28	1.37
13085629--13085667	19	2.0	20	90	5	62	71	7	0	20	1.10
13085639--13085678	19	2.1	19	85	0	53	80	7	0	12	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13086771--13086834	20	3.3	19	77	12	60	71	1	0	26	0.94
13089062--13089107	21	2.1	22	84	4	58	39	0	0	60	0.97
13089065--13089135	13	5.5	13	72	12	56	33	0	0	66	0.92
13089727--13089781	20	2.5	21	82	11	58	56	0	0	43	0.99
13089744--13089796	12	4.3	12	81	11	63	66	0	0	33	0.92
13089745--13089793	25	2.0	25	84	8	64	65	0	0	34	0.93
13089745--13089801	13	4.3	14	74	19	50	64	0	0	35	0.93
13091271--13091327	30	1.9	30	82	7	71	43	0	0	56	0.99
13093236--13093268	2	16.5	2	100	0	66	0	51	0	48	1.00
13096725--13096756	16	1.9	17	93	6	57	68	3	0	28	1.04
13104443--13104498	26	2.1	26	80	9	60	53	1	3	41	1.29
13104890--13104928	12	3.2	12	89	10	62	35	0	0	64	0.94
13106533--13106636	30	3.5	29	76	5	100	46	2	11	39	1.55
13112716--13112745	15	1.9	16	93	6	53	73	0	3	23	0.98
13127827--13127852	2	13.0	2	100	0	52	50	0	0	50	1.00
13128793--13128835	15	2.6	16	86	13	61	67	0	0	32	0.91
13128851--13128903	15	3.5	15	84	2	61	43	0	3	52	1.19
13128870--13128907	11	3.5	11	82	3	51	47	0	0	52	1.00
13140985--13141133	62	2.4	62	77	13	153	41	9	12	36	1.76
13142167--13142200	6	5.3	6	86	13	50	64	0	0	35	0.94
13142167--13142200	14	2.6	14	90	9	54	64	0	0	35	0.94
13145313--13145362	20	2.3	23	77	19	63	66	6	0	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13145621--13145678	30	2.0	30	83	10	75	48	3	5	43	1.42
13151490--13151538	23	2.1	23	85	7	64	14	8	2	75	1.12
13155829--13155938	49	2.2	49	81	1	121	32	10	20	37	1.85
13155843--13156551	47	15.3	48	70	17	267	29	11	20	38	1.87
13156110--13156553	47	9.4	47	76	10	315	30	11	19	39	1.86
13156096--13156553	142	3.2	140	77	7	471	30	10	19	39	1.86
13161477--13161546	31	2.3	28	79	18	70	47	2	0	50	1.16
13163771--13163931	80	2.0	80	88	0	241	46	8	11	32	1.71
13164708--13164784	26	2.7	29	69	22	72	50	0	1	48	1.09
13167251--13167288	19	1.9	19	89	5	58	23	2	0	73	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126