genome.fa.s667.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  70  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14180331--14180387	25	2.2	26	84	15	73	77	5	5	12	1.11
14181683--14181737	22	2.6	21	78	21	69	45	5	0	49	1.25
14186203--14186325	59	2.1	59	90	0	192	39	2	6	51	1.41
14187022--14187116	30	3.2	30	71	11	77	44	4	13	37	1.64
14188137--14188364	112	2.0	112	83	3	280	40	7	6	45	1.57
14199563--14199603	20	2.0	20	90	0	64	31	17	4	46	1.69
14203976--14204016	20	2.0	20	85	0	55	63	4	2	29	1.28
14204703--14204740	17	2.3	17	86	4	51	57	0	2	39	1.12
14212031--14212074	23	2.0	23	86	8	65	20	0	4	75	0.98
14212031--14212083	27	2.0	26	82	10	63	20	0	5	73	1.03
14213163--14213203	16	2.6	15	88	7	55	39	2	0	58	1.11
14214341--14214375	15	2.4	14	86	9	52	14	8	8	68	1.38
14214435--14214483	25	2.0	25	84	8	64	46	6	8	38	1.58
14219876--14219961	21	3.9	22	74	15	79	36	10	15	38	1.81
14219931--14219984	28	1.9	28	88	7	83	33	7	18	40	1.78
14220292--14220434	42	3.4	42	88	2	198	27	14	11	46	1.80
14220292--14220459	42	4.0	42	82	8	155	27	14	13	44	1.83
14221395--14221419	13	1.9	13	100	0	50	16	56	20	8	1.65
14221605--14221661	25	2.3	26	84	6	82	49	1	8	40	1.44
14223142--14223307	53	3.0	53	80	14	176	25	9	7	57	1.56
14224569--14224621	17	3.0	17	79	20	56	18	5	1	73	1.12
14224798--14224963	43	3.9	43	81	4	174	45	15	13	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14224930--14224996	26	2.4	28	82	9	84	46	16	13	23	1.82
14224963--14225239	44	6.3	44	83	2	261	46	18	9	25	1.79
14226268--14226310	13	3.4	12	84	12	59	9	2	2	86	0.76
14234286--14234330	13	3.2	14	84	9	56	48	0	2	48	1.13
14234293--14234600	59	5.1	59	82	11	333	47	4	11	37	1.58
14234293--14234600	122	2.6	118	86	8	392	47	4	11	37	1.58
14245159--14245327	57	2.9	57	75	6	180	53	11	14	20	1.71
14246124--14246567	86	5.2	85	77	9	310	24	19	12	43	1.85
14247844--14248011	60	2.8	57	80	8	185	46	5	8	38	1.60
14248003--14248029	14	1.9	14	100	0	54	22	14	0	62	1.31
14248048--14248213	59	2.8	59	84	6	192	47	7	10	34	1.66
14252169--14252200	14	2.4	13	94	5	55	15	3	0	81	0.82
14257384--14257410	14	1.9	14	100	0	54	37	29	18	14	1.91
14258454--14258750	152	2.0	152	81	4	357	40	10	18	30	1.84
14260289--14260354	17	4.2	16	73	17	50	60	1	0	37	1.06
14260887--14260936	3	16.7	3	95	0	91	32	0	2	66	1.03
14261204--14261243	13	3.2	12	86	10	53	17	2	15	65	1.39
14261813--14261851	6	6.8	6	91	8	55	7	2	0	89	0.56
14261813--14261851	11	3.5	11	92	3	60	7	2	0	89	0.56
14261857--14262009	59	2.6	59	85	8	215	47	8	6	37	1.60
14261924--14262066	73	2.0	73	87	8	211	52	6	6	34	1.52
14261982--14262008	14	1.9	14	100	0	54	59	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14261996--14262186	57	3.3	57	83	7	208	50	6	10	32	1.62
14265867--14266751	451	2.0	453	84	4	1182	35	15	19	29	1.92
14273156--14273187	14	2.3	14	94	0	55	78	0	9	12	0.97
14273129--14273189	19	3.0	20	79	16	63	75	0	11	13	1.05
14274190--14274413	44	5.1	44	82	3	254	23	13	16	45	1.84
14274192--14274408	88	2.5	89	85	3	296	24	13	17	45	1.84
14274430--14274468	16	2.4	16	84	12	53	87	2	2	7	0.73
14275572--14275774	59	3.5	58	82	10	238	46	4	9	39	1.58
14275755--14275792	14	2.9	13	88	7	51	60	2	2	34	1.24
14275776--14275930	57	2.7	57	80	8	145	49	5	12	32	1.65
14275769--14275955	59	3.2	57	79	7	187	49	6	10	32	1.64
14278108--14278165	23	2.7	20	81	10	62	50	1	0	48	1.11
14278752--14278777	3	8.7	3	100	0	52	69	0	0	30	0.89
14281649--14281709	32	2.0	31	87	9	90	40	16	9	32	1.81
14281516--14281843	163	2.0	165	95	2	590	36	16	15	31	1.90
14281678--14281927	133	1.9	134	94	0	448	37	16	16	29	1.91
14282189--14282229	22	1.9	22	85	5	57	21	4	2	70	1.18
14283565--14283590	3	8.7	3	100	0	52	30	0	0	69	0.89
14283601--14283686	10	8.2	10	71	20	61	1	22	4	72	1.10
14285179--14285207	12	2.5	12	94	5	51	68	0	0	31	0.89
14285940--14285983	23	2.0	23	90	4	72	84	11	0	4	0.77
14291481--14291521	21	2.0	21	90	0	64	31	4	9	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14291957--14291989	17	1.9	17	93	0	57	57	9	3	30	1.45
14293459--14293534	31	2.4	31	76	10	75	43	2	1	52	1.23
14293470--14293542	26	2.5	29	81	14	89	43	2	1	52	1.24
14293524--14293557	16	2.1	17	88	5	52	38	0	0	61	0.96
14294977--14295232	126	2.0	126	93	0	440	31	32	19	16	1.94
14296854--14296880	14	1.9	14	100	0	54	51	0	0	48	1.00
14298814--14298849	17	2.1	18	90	10	58	61	2	0	36	1.11
14298808--14298852	16	2.8	16	80	9	56	51	4	2	42	1.34
14302758--14302782	1	25.0	1	100	0	50	0	0	0	100	0.00
14303826--14303877	26	2.0	26	96	0	95	48	9	19	23	1.78
14307762--14307986	123	1.8	123	84	3	310	24	17	33	24	1.96
14307762--14308023	123	2.1	123	82	2	303	25	19	30	24	1.98
14308053--14308096	6	7.3	6	94	0	79	15	0	50	34	1.45
14308772--14308978	104	2.0	104	88	3	310	33	30	7	28	1.84
14309222--14309264	15	2.9	15	100	0	86	20	0	0	79	0.74
14310079--14310103	9	2.8	9	100	0	50	12	0	0	88	0.53
14310117--14310150	2	17.5	2	93	6	61	47	0	0	52	1.00
14311145--14311185	16	2.5	17	76	11	50	39	2	0	58	1.11
14311346--14311389	7	7.0	7	78	21	53	54	0	0	45	0.99
14311354--14311421	18	4.0	17	75	11	68	54	1	2	41	1.24
14311502--14311544	20	2.2	20	86	0	59	51	0	2	46	1.13
14311990--14312031	19	2.2	20	75	8	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14317519--14317675	52	3.0	51	84	5	181	43	8	21	25	1.81
14318604--14318744	52	2.7	52	87	0	174	46	8	18	26	1.77
14322673--14322713	21	2.0	21	90	4	66	26	4	0	68	1.10
14330529--14330578	22	2.3	22	80	13	59	30	4	8	58	1.45
14331178--14331252	30	2.6	27	76	19	73	56	1	1	41	1.16
14332325--14332371	25	2.0	24	84	16	62	48	8	8	34	1.64
14332521--14332584	21	3.2	20	72	14	62	34	0	0	65	0.93
14332518--14332596	41	2.0	38	82	7	95	37	0	0	62	0.96
14339967--14340007	22	1.9	22	90	5	66	36	0	0	63	0.95
14340470--14340496	5	5.4	5	100	0	54	44	18	0	37	1.50
14340837--14340867	14	2.2	14	100	0	62	41	0	6	51	1.27
14340841--14340873	14	2.4	14	90	5	50	42	0	6	51	1.26
14340876--14340943	30	2.3	29	77	5	73	50	5	10	33	1.61
14341923--14341972	23	2.2	23	96	0	91	50	0	6	44	1.26
14341962--14342010	14	3.5	13	81	13	62	59	0	0	40	0.98
14345667--14345705	15	2.6	15	87	0	51	69	7	5	17	1.32
14348297--14348325	12	2.5	12	94	5	51	68	0	0	31	0.89
14350039--14350084	17	2.7	17	82	0	56	45	15	6	32	1.71
14351206--14351252	21	2.2	21	92	0	76	36	4	12	46	1.62
14353716--14353879	35	4.6	34	75	10	132	39	17	26	17	1.91
14353789--14353923	36	3.8	35	80	3	119	42	17	25	14	1.87
14359187--14359220	17	1.9	18	88	5	52	32	20	5	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14366375--14366406	15	2.1	15	94	0	55	15	0	25	59	1.36
14366421--14366487	28	2.3	29	82	7	75	16	1	31	50	1.54
14366466--14366509	22	1.9	23	90	9	72	18	0	40	40	1.50
14366864--14366909	3	14.7	3	82	8	56	34	0	0	65	0.93
14367289--14367342	27	2.0	27	92	0	90	22	18	18	40	1.91
14372933--14372988	22	2.8	20	77	17	62	67	0	0	32	0.91
14372933--14372984	21	2.4	23	84	12	67	67	0	0	32	0.91
14379656--14379700	18	2.5	17	79	10	54	35	2	0	62	1.08
14380585--14380618	12	2.8	12	86	0	50	20	5	0	73	1.04
14380678--14380709	16	2.1	16	94	5	57	15	6	0	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126