genome.fa.s667.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  115  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22736026--22736409	56	6.7	56	69	20	174	50	1	1	46	1.19
22735977--22736425	106	4.3	104	73	20	279	49	1	0	47	1.18
22735928--22736408	15	29.9	15	66	22	125	49	1	0	47	1.18
22736533--22736562	5	5.8	5	92	7	51	80	0	0	20	0.72
22738887--22738941	16	3.7	15	73	14	51	18	0	38	43	1.50
22738864--22738946	29	2.9	30	78	7	91	19	0	32	48	1.49
22739333--22739387	20	2.9	19	76	10	60	29	1	7	61	1.33
22740079--22740112	17	1.9	18	94	5	61	0	8	2	88	0.62
22741266--22741290	6	4.2	6	100	0	50	48	0	0	52	1.00
22742873--22742910	14	2.7	15	84	8	53	55	0	0	44	0.99
22747160--22747202	17	2.4	18	81	11	54	34	6	11	46	1.67
22747575--22747661	44	2.0	44	86	4	122	45	3	5	44	1.44
22747619--22747953	72	4.7	71	72	14	244	44	5	9	41	1.59
22747681--22747948	140	1.9	142	79	9	307	43	5	9	41	1.60
22748352--22748401	14	3.4	14	78	10	55	40	0	2	58	1.10
22748354--22748415	30	2.1	30	84	0	79	43	0	1	54	1.09
22748388--22748438	21	2.5	21	93	3	86	49	0	0	50	1.00
22749851--22749883	2	16.5	2	100	0	66	0	48	0	51	1.00
22750069--22750098	3	10.0	3	100	0	60	0	33	0	66	0.92
22755253--22755277	13	1.9	13	100	0	50	64	8	12	16	1.49
22757123--22757148	6	4.3	6	100	0	52	38	0	0	61	0.96
22764031--22764073	22	2.0	22	85	0	59	37	11	6	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22764152--22764207	28	2.0	28	100	0	112	28	7	25	39	1.82
22771211--22771251	21	2.0	21	85	9	57	39	2	7	51	1.43
22771235--22771267	17	1.9	17	93	0	57	30	9	6	54	1.56
22771253--22771300	22	2.2	22	84	0	60	39	8	4	47	1.53
22771423--22771500	22	3.5	22	75	6	68	39	10	7	42	1.68
22771669--22771720	22	2.4	22	86	0	68	32	1	3	61	1.25
22771965--22772035	22	3.2	21	78	7	70	40	9	4	45	1.57
22771975--22772115	22	6.4	22	76	5	106	42	7	4	45	1.52
22771973--22772115	44	3.2	45	80	5	123	41	7	4	45	1.54
22771956--22772158	66	3.1	65	77	8	162	40	6	5	47	1.52
22772007--22772153	22	6.7	22	78	5	138	41	4	6	46	1.51
22772155--22772230	22	3.5	22	77	0	71	39	10	6	43	1.65
22772214--22772298	22	3.9	22	80	0	71	38	11	7	42	1.69
22772386--22772781	22	17.9	22	64	15	77	37	8	5	48	1.55
22772401--22772690	66	4.4	62	74	11	190	38	8	5	47	1.58
22772444--22772628	44	4.2	44	75	5	124	37	8	4	48	1.55
22773068--22773391	22	14.9	22	69	14	136	34	7	4	53	1.51
22773068--22773345	65	4.3	66	73	9	185	33	7	4	54	1.49
22773226--22773255	14	2.1	15	93	6	53	30	0	6	63	1.20
22773351--22773421	22	3.3	22	80	2	72	35	7	5	52	1.52
22776372--22776657	153	1.9	154	87	5	427	46	4	6	42	1.51
22776609--22776794	92	2.0	92	91	0	300	31	8	9	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22783428--22783505	24	3.0	25	81	12	79	39	3	0	56	1.18
22783468--22783507	12	3.3	12	78	0	53	37	2	0	60	1.11
22784453--22784485	2	16.5	2	100	0	66	51	0	0	48	1.00
22796138--22796168	2	15.5	2	93	0	53	45	0	0	54	0.99
22796136--22796172	8	4.6	8	93	0	56	40	0	0	59	0.97
22799911--22799963	22	2.4	22	74	0	52	47	3	11	37	1.58
22799944--22799982	19	2.1	19	90	0	60	41	0	10	48	1.37
22800094--22800136	22	2.0	22	95	0	77	44	4	9	41	1.57
22800232--22800351	43	2.7	45	78	12	124	53	8	5	32	1.55
22800214--22800350	65	2.1	66	81	9	156	54	8	6	31	1.55
22800192--22800371	22	8.3	22	73	11	95	52	8	6	32	1.57
22800468--22800498	8	3.8	8	95	4	53	64	0	0	35	0.94
22800468--22800499	3	11.3	3	87	12	50	65	0	0	34	0.93
22800526--22800618	48	1.9	48	82	0	114	50	8	8	32	1.63
22800665--22800717	22	2.4	22	87	6	72	45	3	13	37	1.61
22800768--22800829	21	2.9	21	83	7	72	50	4	4	40	1.45
22800850--22800923	22	3.3	21	81	12	78	52	4	8	35	1.50
22800884--22801003	22	5.5	22	80	5	109	48	2	8	40	1.47
22800930--22801005	11	6.9	11	72	0	62	43	1	11	43	1.49
22801046--22801229	22	8.4	22	71	8	108	45	8	6	39	1.61
22801576--22801623	21	2.2	22	92	3	80	41	14	8	35	1.76
22801625--22801718	21	4.7	21	72	10	70	51	7	6	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22801855--22801891	2	18.5	2	100	0	74	48	0	0	51	1.00
22801941--22801973	17	1.9	17	88	11	50	42	3	0	54	1.15
22807148--22807173	6	4.3	6	100	0	52	19	34	0	46	1.50
22809498--22809601	52	2.0	52	90	5	167	48	9	0	42	1.36
22815008--22815036	12	2.5	12	94	5	51	0	13	0	86	0.58
22815789--22815848	29	2.0	31	80	9	70	46	3	1	48	1.28
22816178--22816258	29	2.7	29	86	7	99	49	4	0	45	1.23
22819457--22819526	37	1.9	36	94	2	122	47	1	0	51	1.09
22820368--22820451	15	5.4	15	64	13	53	40	3	7	48	1.48
22820393--22820437	21	2.1	21	83	0	54	40	4	8	46	1.55
22820400--22820445	21	2.2	21	84	0	56	39	2	8	50	1.46
22823375--22823425	20	2.5	20	83	3	66	47	0	3	49	1.20
22823375--22823420	21	2.2	21	88	3	67	47	0	2	50	1.13
22831538--22831967	57	7.4	57	77	16	327	38	6	4	49	1.51
22831544--22831968	59	7.3	57	81	10	420	38	7	4	49	1.51
22831544--22831968	118	3.7	118	88	5	566	38	7	4	49	1.51
22833009--22833038	6	5.2	6	92	8	53	83	0	0	16	0.65
22832995--22833038	11	4.0	11	80	11	54	81	0	2	15	0.78
22834313--22834348	18	2.0	18	94	0	63	13	27	11	47	1.77
22848669--22848716	6	8.0	6	83	6	53	79	4	12	4	1.02
22850219--22850268	27	1.9	27	88	8	77	42	38	2	18	1.61
22850246--22850380	7	20.4	7	66	22	51	46	32	0	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22850221--22850302	33	2.5	34	86	9	116	45	32	1	20	1.59
22850253--22850317	27	2.4	27	82	12	80	46	30	0	23	1.53
22850278--22850367	19	4.6	19	71	9	74	47	32	1	18	1.56
22850307--22850406	38	2.6	36	80	12	96	49	29	1	21	1.56
22850279--22850404	19	6.5	19	68	21	57	49	29	0	20	1.55
22850344--22850429	12	6.9	12	75	8	66	51	29	0	19	1.48
22851463--22851498	18	2.0	18	88	0	54	47	2	19	30	1.64
22852158--22852201	16	2.7	16	86	10	54	61	0	13	25	1.32
22852164--22852201	17	2.2	17	86	13	51	63	0	15	21	1.31
22852593--22852632	20	2.0	20	90	5	62	42	0	0	57	0.98
22854244--22854313	24	3.0	22	78	13	79	44	0	1	54	1.09
22854250--22854347	20	4.6	21	75	17	69	44	3	1	51	1.24
22854349--22854493	77	1.9	76	84	5	195	37	6	3	52	1.44
22854614--22854761	72	2.1	71	82	5	174	39	6	4	50	1.46
22855399--22855456	26	2.2	25	82	11	64	53	3	0	43	1.17
22859628--22859775	76	1.9	76	95	0	269	38	22	16	22	1.93
22865949--22866005	3	19.0	3	92	0	96	31	0	3	64	1.10
22869647--22869802	74	2.1	76	84	11	202	50	2	8	39	1.46
22870736--22870763	2	14.0	2	100	0	56	50	0	0	50	1.00
22877885--22877910	2	13.0	2	100	0	52	50	0	50	0	1.00
22888110--22888221	58	1.9	57	84	12	149	50	5	0	43	1.31
22888792--22888823	16	2.0	16	93	0	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22888793--22888832	16	2.5	16	87	0	53	40	0	2	57	1.12
22892005--22892033	2	14.5	2	100	0	58	0	48	0	51	1.00
22892283--22892514	123	1.9	124	84	3	317	25	16	14	43	1.85
22897335--22897377	19	2.3	19	84	8	52	53	4	2	39	1.34
22898225--22898523	154	1.9	155	86	2	424	45	5	6	42	1.53
22898576--22898601	2	13.0	2	100	0	52	50	0	0	50	1.00
22902513--22902549	19	1.9	19	94	0	65	43	5	2	48	1.40
22903504--22903548	23	1.9	24	86	4	65	31	4	4	60	1.37
22906047--22906098	23	2.3	23	83	6	61	26	1	13	57	1.47
22914821--22914847	1	27.0	1	100	0	54	0	0	0	100	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126