genome.fa.s667.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  113  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22334220--22334255	7	5.1	7	93	0	63	25	61	0	13	1.33
22336237--22336302	26	2.6	26	75	20	68	50	1	1	46	1.20
22336299--22336374	18	4.2	18	74	12	59	53	2	1	42	1.23
22336397--22336481	32	2.9	28	76	19	84	42	1	1	55	1.15
22336416--22336481	30	2.1	30	88	5	96	42	0	1	56	1.08
22336428--22336478	22	2.3	23	83	12	72	45	0	1	52	1.12
22336408--22336495	30	3.0	30	77	12	94	47	0	2	50	1.13
22336597--22336649	22	2.6	19	72	16	52	35	15	1	47	1.56
22336909--22336972	32	2.0	32	100	0	128	46	12	9	31	1.73
22340300--22340340	12	3.4	12	86	0	64	36	0	0	63	0.95
22340298--22340340	8	5.4	8	85	0	50	37	0	0	62	0.95
22341215--22341249	10	3.5	10	100	0	70	51	0	0	48	1.00
22341168--22341232	13	4.8	13	70	12	51	47	3	1	47	1.27
22347410--22347467	18	3.4	18	74	13	59	60	0	1	37	1.07
22347640--22347678	17	2.4	17	87	8	55	38	2	0	58	1.12
22347672--22347713	18	2.4	18	88	11	61	26	0	4	69	1.08
22347719--22347778	25	2.3	26	86	11	79	45	1	0	53	1.10
22348492--22348534	20	2.1	21	86	4	61	13	9	2	74	1.16
22349912--22349987	29	2.5	30	79	10	84	50	1	5	43	1.33
22355670--22355727	2	29.0	2	80	13	57	41	1	3	53	1.28
22356762--22356828	20	3.4	21	82	11	63	29	0	1	68	0.98
22356781--22356828	21	2.4	21	90	10	75	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22358867--22358936	21	3.4	21	71	16	58	75	4	8	11	1.16
22358879--22358946	18	3.6	18	73	11	55	80	5	4	8	1.00
22360634--22360693	29	2.0	30	87	3	86	40	5	1	53	1.33
22371658--22371781	64	1.9	64	88	3	187	52	5	4	37	1.46
22371682--22371901	112	2.0	112	87	7	322	49	7	5	37	1.54
22371999--22372137	71	2.0	71	80	5	156	44	9	5	41	1.58
22373074--22373153	15	5.4	14	70	15	54	51	11	0	37	1.38
22376680--22376725	24	1.9	24	82	8	58	50	30	0	19	1.48
22388253--22388435	93	2.0	93	93	0	312	34	20	16	27	1.95
22388923--22388959	19	1.9	19	88	0	56	27	0	10	62	1.28
22389211--22389267	4	14.2	4	85	7	62	71	7	0	21	1.08
22393853--22393972	34	3.6	33	82	7	134	51	5	2	40	1.37
22393850--22393908	15	3.7	15	76	12	64	54	3	1	40	1.27
22394515--22394593	34	2.3	34	82	4	97	46	2	5	45	1.38
22401005--22401040	18	2.0	18	88	0	54	50	5	11	33	1.61
22406281--22406319	5	7.6	5	97	2	69	0	17	2	79	0.84
22408634--22409255	323	1.9	323	81	6	756	25	4	18	50	1.66
22418360--22418456	51	1.9	51	85	4	133	38	6	9	46	1.61
22419666--22419724	21	2.8	21	84	0	73	35	5	13	45	1.66
22420034--22420075	22	1.9	22	85	0	57	28	0	9	61	1.27
22420118--22420166	22	2.2	22	85	0	62	36	10	8	44	1.68
22420128--22420213	22	4.0	22	80	3	77	41	6	5	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22420274--22420762	22	22.3	22	70	10	133	37	9	5	47	1.60
22421065--22421106	22	1.9	22	85	0	57	42	4	7	45	1.52
22421202--22421262	11	5.6	10	74	16	50	37	3	6	52	1.44
22421202--22421271	22	3.2	22	71	15	63	40	2	7	50	1.45
22421285--22421676	22	18.2	22	71	13	134	36	8	4	50	1.54
22421307--22421366	21	2.8	22	82	5	68	33	1	10	55	1.43
22421284--22421439	84	1.8	85	82	9	203	34	5	7	52	1.52
22421512--22421667	65	2.4	64	80	7	172	41	8	3	46	1.51
22421551--22421603	11	4.8	12	73	13	51	45	7	1	45	1.42
22421634--22421676	21	2.0	22	86	4	61	39	11	0	48	1.40
22421704--22421802	44	2.2	44	82	7	112	41	6	3	49	1.43
22421734--22421802	11	6.3	11	82	0	75	42	4	1	52	1.30
22421734--22421816	22	3.8	22	83	0	94	42	4	3	49	1.41
22421951--22422007	22	2.6	21	83	5	69	38	10	1	49	1.48
22422787--22422817	2	15.5	2	100	0	62	48	0	0	51	1.00
22425174--22425204	2	15.5	2	100	0	62	51	0	0	48	1.00
22426676--22426753	30	2.6	30	85	2	95	38	5	2	53	1.37
22426817--22426857	17	2.4	18	84	12	59	63	0	0	36	0.95
22427161--22427207	16	2.9	16	90	0	76	40	2	4	53	1.32
22427355--22427400	16	2.9	16	80	0	56	28	6	8	56	1.54
22427802--22427853	24	2.2	23	93	3	86	44	1	0	53	1.11
22428064--22428101	19	2.0	20	84	5	51	55	5	0	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22428104--22428382	140	2.0	141	92	2	463	51	4	2	41	1.37
22428323--22428365	22	2.0	21	90	4	68	60	0	0	39	0.97
22429130--22429182	20	2.7	20	100	0	106	26	26	3	43	1.72
22433721--22433827	30	3.6	30	79	9	103	39	5	7	47	1.55
22434576--22434627	25	2.2	24	82	6	61	61	0	19	19	1.35
22434926--22434961	16	2.2	17	90	5	56	27	0	0	72	0.85
22445315--22445381	34	2.0	34	96	0	125	28	16	7	47	1.73
22448130--22448204	34	2.2	35	85	2	98	36	2	4	57	1.32
22448660--22448697	12	3.1	12	82	17	51	42	7	2	47	1.46
22451986--22452165	97	1.9	97	95	0	324	50	20	16	13	1.78
22452244--22452273	15	2.0	15	100	0	60	13	20	20	46	1.83
22452437--22452485	23	2.1	23	88	0	71	28	14	8	48	1.72
22454134--22454168	17	2.1	17	94	0	61	34	5	14	45	1.68
22455903--22456031	62	2.1	62	86	5	181	48	6	7	37	1.57
22455979--22456176	105	1.9	106	85	5	276	44	8	6	40	1.60
22462183--22462230	20	2.5	20	96	3	89	62	4	4	29	1.32
22468285--22468333	21	2.3	21	92	0	80	10	16	10	63	1.52
22478114--22478155	22	1.9	22	85	0	57	45	9	9	35	1.69
22481788--22481846	25	2.5	24	81	13	68	44	18	23	13	1.86
22482330--22482610	142	2.0	142	98	0	544	25	17	17	39	1.91
22483940--22483991	16	3.4	15	78	10	52	40	0	1	57	1.10
22486529--22486666	67	2.1	67	84	2	179	29	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22496572--22496600	2	14.5	2	100	0	58	48	0	0	51	1.00
22499911--22499951	8	5.2	8	85	2	57	41	0	0	58	0.98
22499911--22499966	16	3.6	15	85	2	58	46	0	0	53	1.00
22499937--22499988	21	2.5	21	93	6	88	50	0	0	50	1.00
22500053--22500082	10	3.1	10	90	9	53	76	0	0	23	0.78
22500055--22500079	9	2.8	9	100	0	50	84	0	0	16	0.63
22500793--22500839	22	2.1	22	84	0	58	34	25	14	25	1.94
22506852--22506890	21	1.9	19	85	10	51	12	0	28	58	1.34
22514302--22514326	2	12.5	2	100	0	50	52	0	48	0	1.00
22514975--22514999	11	2.3	11	100	0	50	8	8	0	84	0.79
22515397--22515449	21	2.3	24	81	9	67	56	11	3	28	1.51
22519369--22519423	27	2.0	27	82	0	65	50	34	3	10	1.55
22524553--22524587	4	8.8	4	100	0	70	74	0	0	25	0.82
22524749--22524800	27	1.9	27	96	0	95	32	0	7	59	1.26
22524772--22524828	21	2.7	21	88	0	78	31	7	7	54	1.54
22524794--22524860	21	3.2	21	81	12	75	32	5	7	53	1.53
22525111--22525371	22	12.0	22	69	6	118	39	8	6	45	1.59
22525245--22525368	44	2.8	44	80	9	135	39	5	5	49	1.50
22525298--22525381	22	3.8	22	69	9	55	36	9	7	46	1.64
22525320--22525462	74	1.9	74	84	2	189	41	7	4	45	1.54
22525403--22525480	22	3.6	21	75	3	66	42	10	6	41	1.64
22525490--22525532	22	2.0	22	90	0	68	30	6	6	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22525568--22525651	22	3.9	22	76	9	82	39	8	1	51	1.40
22525634--22525667	16	2.2	15	94	5	59	35	5	5	52	1.50
22525732--22525775	23	1.9	23	90	9	72	38	13	6	40	1.71
22525725--22525844	22	5.5	22	75	11	93	39	6	5	49	1.51
22525785--22525846	11	5.7	11	75	11	65	37	3	1	58	1.24
22525781--22525852	22	3.3	22	83	9	94	36	2	4	56	1.33
22526161--22526236	22	3.5	22	78	7	73	38	7	3	50	1.50
22526176--22526266	22	4.2	22	78	12	71	38	6	7	47	1.58
22526259--22526340	22	3.9	21	73	10	69	37	6	7	48	1.56
22526379--22526762	22	17.5	22	69	8	120	35	8	4	51	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126