genome.fa.s667.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  6  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1417898--1417994	48	2.0	48	87	0	140	22	35	8	34	1.84
1418139--1418238	52	1.9	52	87	4	148	26	20	8	46	1.78
1418648--1418690	16	2.6	16	88	3	59	34	6	2	55	1.39
1419804--1419845	16	2.6	16	88	0	57	35	7	2	54	1.41
1419969--1420007	17	2.4	16	87	8	53	20	2	2	74	1.06
1424588--1424672	43	2.0	43	92	0	143	40	12	3	43	1.60
1427744--1427778	15	2.2	16	90	5	54	0	17	0	82	0.66
1427855--1427896	15	2.8	16	80	20	54	35	0	7	57	1.26
1427870--1427922	28	1.9	27	85	11	72	37	1	1	58	1.20
1428359--1428408	26	2.0	24	88	7	73	34	4	18	44	1.68
1428953--1429028	16	4.4	16	76	20	64	13	6	1	78	0.99
1429035--1429497	58	7.9	60	81	10	489	44	7	12	36	1.70
1433558--1433594	10	3.8	10	89	7	58	86	0	13	0	0.57
1433560--1433594	9	3.8	9	96	3	61	88	0	11	0	0.51
1433560--1433602	9	4.6	9	88	8	50	83	0	13	2	0.74
1433558--1433623	19	3.5	19	79	2	71	78	0	16	4	0.90
1434910--1435125	41	5.4	40	77	12	198	24	16	23	36	1.94
1434980--1435125	41	3.5	41	86	1	202	23	17	22	36	1.95
1435139--1435176	11	3.3	12	82	10	53	84	7	0	7	0.79
1435132--1435176	22	2.2	20	92	8	72	84	8	0	6	0.78
1435132--1435176	10	4.3	10	86	8	63	84	8	0	6	0.78
1435277--1435316	21	2.0	21	90	5	64	17	40	27	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435355--1435389	15	2.2	16	90	5	54	0	17	0	82	0.66
1435959--1436009	26	2.0	25	88	11	77	35	1	15	47	1.57
1436507--1436653	21	6.6	22	77	15	108	20	2	2	74	1.04
1436596--1436657	11	5.5	10	74	22	52	12	3	1	82	0.87
1436510--1436656	22	6.6	21	73	14	89	20	2	2	74	1.04
1436619--1436658	7	5.4	7	88	11	62	15	0	0	85	0.61
1436579--1436657	6	13.8	6	69	15	51	13	5	1	79	0.95
1436576--1436660	16	5.1	15	77	21	73	15	4	1	78	0.97
1436685--1437070	58	6.7	58	83	9	436	42	7	13	35	1.74
1436685--1437070	110	3.3	118	82	7	404	42	7	13	35	1.74
1436978--1437068	27	3.2	27	66	27	71	41	6	15	36	1.73
1442745--1442783	20	2.0	20	84	0	51	15	7	0	76	0.99
1446840--1446881	21	2.0	21	85	0	57	64	2	2	30	1.19
1456746--1456772	2	13.5	2	100	0	54	48	0	0	51	1.00
1456904--1456954	19	2.7	19	83	16	70	49	0	0	50	1.00
1456907--1456951	21	2.2	21	92	7	76	51	0	0	48	1.00
1457176--1457230	2	27.5	2	86	0	74	54	0	1	43	1.10
1458445--1458492	24	2.0	25	87	4	71	37	0	0	62	0.95
1458578--1458610	14	2.3	15	89	5	50	48	0	6	45	1.27
1469458--1469532	32	2.4	32	81	2	98	44	14	9	32	1.77
1470267--1470758	263	1.8	269	89	4	782	43	3	7	44	1.51
1471042--1471081	18	2.2	18	86	0	53	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471103--1471163	16	4.1	16	71	25	53	50	0	0	49	1.00
1472570--1472737	85	2.0	84	89	1	255	38	14	18	29	1.90
1476236--1476277	19	2.2	20	87	8	61	30	2	2	64	1.19
1476235--1476281	17	2.6	17	83	6	58	34	2	2	61	1.20
1476297--1476347	10	5.0	10	77	11	50	56	0	0	43	0.99
1477074--1477391	166	1.9	166	94	1	557	23	9	23	43	1.83
1480608--1480674	18	3.4	18	68	18	53	22	11	10	55	1.66
1482546--1482613	35	1.9	35	93	0	118	39	10	17	32	1.84
1483210--1483261	12	4.5	12	77	15	56	55	0	0	44	0.99
1483210--1483261	22	2.3	22	87	12	70	55	0	0	44	0.99
1490122--1490262	19	8.4	17	64	28	61	43	0	0	55	1.04
1490128--1490163	19	1.9	18	94	5	63	47	0	0	52	1.00
1490158--1490200	10	4.3	10	85	8	61	34	0	0	65	0.93
1490159--1490207	21	2.4	21	86	10	66	36	0	0	63	0.95
1490168--1490206	10	3.5	11	86	6	53	38	0	0	61	0.96
1490159--1490207	11	4.8	10	85	9	55	36	0	0	63	0.95
1490114--1490311	98	2.0	98	96	0	360	44	0	0	55	1.03
1490257--1490305	11	4.8	10	82	9	55	40	0	0	59	0.98
1490155--1490304	30	4.7	33	69	24	115	42	0	0	57	1.03
1490398--1490445	22	2.2	22	84	0	60	43	4	2	50	1.33
1490406--1490481	27	2.9	26	80	7	91	39	3	3	52	1.38
1490450--1490543	46	2.1	45	80	9	102	35	1	3	60	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1490478--1490566	45	2.0	44	82	6	108	48	0	1	50	1.08
1492930--1492961	2	16.0	2	100	0	64	50	0	0	50	1.00
1493684--1493779	42	2.3	42	80	12	108	55	3	1	40	1.23
1495710--1495752	11	3.7	11	84	9	50	65	2	2	30	1.18
1495859--1495894	8	4.2	8	89	10	54	58	0	2	38	1.13
1497596--1497655	27	2.3	26	80	8	68	36	5	0	58	1.20
1497604--1497650	22	2.2	21	92	3	76	38	4	0	57	1.18
1508074--1508111	19	2.0	19	85	10	51	55	0	0	44	0.99
1508507--1508571	29	2.2	28	81	10	69	52	1	0	46	1.10
1516769--1516889	62	2.0	60	87	7	174	38	12	11	37	1.79
1547067--1547109	2	21.5	2	100	0	86	51	0	0	48	1.00
1550125--1550173	2	24.5	2	100	0	98	0	48	0	51	1.00
1550299--1550354	28	1.9	28	85	7	76	50	10	16	23	1.76
1551078--1551116	20	1.9	21	84	5	53	46	0	7	46	1.31
1552411--1552443	10	3.4	10	87	8	50	24	0	0	75	0.80
1552618--1552651	12	2.8	12	86	0	50	50	11	2	35	1.54
1552871--1552908	19	2.0	19	94	0	67	55	15	15	13	1.70
1553584--1553636	18	2.7	20	75	16	56	50	1	0	47	1.12
1554128--1554174	21	2.2	21	96	0	85	51	0	2	46	1.13
1554662--1554709	10	4.6	10	80	10	51	31	0	0	68	0.90
1554659--1554721	12	5.1	12	76	14	56	33	0	0	66	0.92
1555764--1555806	20	2.1	20	86	4	59	53	0	2	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1555977--1556029	16	3.3	16	78	0	61	37	1	5	54	1.35
1556020--1556051	11	2.6	13	80	19	50	50	0	0	50	1.00
1556095--1556137	19	2.4	19	88	7	63	30	0	2	67	1.03
1556162--1556208	23	2.2	21	85	11	60	57	0	0	42	0.98
1560076--1560156	40	2.0	40	97	0	153	37	12	16	34	1.86
1566628--1566653	3	8.7	3	100	0	52	0	34	0	65	0.93
1567448--1567473	7	3.7	7	100	0	52	84	0	0	15	0.62
1567739--1567796	28	2.1	28	83	0	71	56	0	10	32	1.33
1570655--1570710	24	2.3	24	84	6	69	51	5	37	5	1.47
1575314--1575348	10	3.4	10	96	4	61	42	0	0	57	0.99
1575960--1576030	28	2.5	28	76	19	74	46	0	2	50	1.16
1576180--1576225	21	2.2	21	88	0	65	43	10	2	43	1.51
1589052--1589115	24	2.8	25	80	13	68	35	1	3	59	1.23
1589099--1589123	13	1.9	13	100	0	50	24	0	0	76	0.80
1591642--1591686	19	2.3	19	88	3	63	51	13	22	13	1.75
1593200--1593250	19	2.7	20	79	14	54	50	0	1	47	1.12
1593201--1593250	21	2.4	21	90	9	77	50	0	2	48	1.12
1593731--1593781	21	2.5	20	77	6	57	37	0	0	62	0.95
1593767--1593791	12	2.1	12	100	0	50	32	0	0	68	0.90
1593764--1593807	16	2.6	17	82	7	54	34	0	0	65	0.93
1594851--1594894	21	2.1	21	87	8	63	56	0	2	40	1.11
1594846--1594912	27	2.5	26	75	17	66	50	1	2	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595363--1595434	31	2.3	31	100	0	144	55	0	0	44	0.99
1595365--1595424	11	5.6	11	74	7	61	55	0	0	45	0.99
1599194--1599274	40	2.0	40	97	0	153	37	12	16	34	1.86
1607157--1607355	106	1.9	106	88	2	301	30	13	8	47	1.72
1607803--1607846	17	2.6	17	77	0	52	52	0	2	45	1.13
1608823--1608877	21	2.7	21	88	8	78	32	1	1	63	1.15
1612533--1612620	24	3.5	24	72	20	72	53	4	36	5	1.45
1617831--1617873	21	2.0	21	86	8	61	53	0	0	46	1.00
1617819--1617891	30	2.5	27	75	22	67	46	0	2	50	1.15
1618042--1618089	21	2.3	21	88	0	69	39	12	2	45	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126