genome.fa.s667.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  64  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13170187--13170215	15	1.9	15	100	0	58	13	0	17	68	1.20
13179361--13179404	20	2.2	21	84	8	56	36	2	0	61	1.09
13184909--13184991	39	2.1	39	95	0	148	36	4	32	26	1.78
13209278--13209334	20	2.8	21	71	13	55	47	1	0	50	1.11
13209398--13209429	12	2.5	13	95	5	57	59	0	0	40	0.97
13214813--13214838	2	13.0	2	100	0	52	50	0	0	50	1.00
13216404--13216433	15	2.0	15	100	0	60	66	13	0	20	1.24
13222740--13222900	80	2.0	80	86	2	225	35	9	10	44	1.72
13227431--13227479	23	2.2	22	82	10	55	44	4	18	32	1.68
13229211--13229401	102	1.9	103	82	7	246	47	12	16	23	1.81
13229189--13229544	170	2.1	170	85	2	482	44	12	19	23	1.85
13229377--13229748	203	1.8	203	87	0	555	45	12	20	22	1.84
13229653--13229842	68	2.8	67	80	8	190	46	12	18	22	1.82
13229377--13229778	102	3.9	102	84	3	497	45	12	20	22	1.84
13229552--13229911	170	2.1	170	83	1	463	45	12	19	22	1.84
13229789--13229859	34	2.1	34	86	0	97	50	12	19	16	1.77
13229721--13230045	102	3.2	103	84	3	372	46	12	19	21	1.82
13229190--13230057	373	2.3	373	86	4	1187	45	12	19	22	1.83
13229208--13230064	272	3.2	270	78	6	668	46	12	19	22	1.83
13246077--13246126	18	2.7	19	78	12	59	54	0	2	44	1.11
13246560--13246601	13	3.2	13	81	15	50	35	0	2	61	1.09
13247173--13247250	41	1.9	41	86	5	113	30	6	6	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13248904--13249060	52	3.0	52	85	3	208	26	20	8	44	1.79
13249072--13249127	22	2.6	22	85	2	78	51	25	0	23	1.48
13249081--13249127	11	4.3	11	77	0	58	48	25	0	25	1.51
13249397--13249453	24	2.3	24	84	3	78	17	40	10	31	1.84
13249382--13249470	25	3.6	25	78	3	90	20	34	8	35	1.84
13249397--13249469	24	3.0	23	78	7	74	19	36	9	34	1.84
13250105--13250204	52	1.9	53	81	6	123	29	9	9	53	1.63
13257340--13257727	145	2.7	144	90	2	593	41	10	16	30	1.83
13260012--13260042	6	5.0	6	92	7	53	64	0	0	35	0.94
13261574--13261629	28	2.0	28	89	0	85	25	23	3	48	1.67
13263287--13263324	10	3.9	10	82	6	51	84	5	7	2	0.86
13264408--13264461	15	3.5	15	75	5	54	75	0	18	5	0.98
13264414--13264455	21	2.0	22	90	4	68	73	0	19	7	1.05
13265342--13265397	28	2.0	28	92	0	94	26	23	8	41	1.84
13265404--13265655	33	7.7	33	73	6	215	28	18	17	35	1.94
13265399--13265643	131	1.9	132	90	0	393	31	18	16	33	1.93
13265370--13265648	66	4.2	66	85	3	357	30	18	16	35	1.93
13266232--13266281	22	2.3	21	93	3	82	14	22	24	40	1.90
13266353--13266572	77	2.9	74	82	7	255	13	22	15	48	1.80
13266367--13266743	38	10.0	38	69	11	186	15	22	14	47	1.81
13266746--13267440	109	6.4	110	77	6	578	20	20	13	45	1.84
13266748--13267368	218	2.9	217	80	5	644	20	20	13	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13267081--13267246	36	4.6	35	71	11	120	19	23	15	41	1.89
13269326--13269427	15	6.9	15	79	9	111	45	41	0	13	1.44
13269342--13269424	29	2.9	28	89	3	121	48	38	0	13	1.42
13269324--13269497	73	2.4	73	93	0	285	44	37	1	17	1.56
13269326--13269445	44	2.7	43	79	10	127	46	38	0	14	1.50
13269419--13269540	29	4.2	29	70	12	88	45	31	2	20	1.64
13269324--13269540	73	3.0	73	86	2	276	45	35	1	17	1.58
13269577--13269759	30	6.3	29	75	9	131	46	28	2	22	1.64
13269704--13269776	14	5.1	14	73	16	53	50	28	1	19	1.56
13269805--13269894	14	6.3	15	71	19	59	48	33	1	16	1.54
13269577--13269895	28	11.3	29	69	15	134	46	30	1	21	1.62
13269899--13270000	15	6.7	14	75	14	71	55	27	0	16	1.41
13269885--13269986	22	4.8	22	66	22	65	53	27	0	18	1.44
13271936--13272321	192	2.0	191	97	0	727	48	9	7	34	1.63
13273535--13273567	2	17.0	2	93	6	59	51	0	0	48	1.00
13274301--13274337	17	2.2	17	95	0	65	32	16	2	48	1.60
13275735--13275765	15	2.1	15	94	5	55	45	6	0	48	1.28
13275827--13275899	17	4.1	17	75	5	56	53	0	4	42	1.20
13283863--13283901	15	2.6	15	83	0	51	10	7	0	82	0.86
13285961--13286048	44	2.0	44	90	0	140	32	18	22	26	1.97
13286027--13286285	129	2.0	129	99	0	509	41	13	20	24	1.89
13288550--13288588	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13288587--13288624	3	13.0	3	94	5	69	31	0	0	68	0.90
13288587--13288630	9	5.2	8	94	5	54	29	0	0	70	0.88
13288796--13288823	14	2.0	14	100	0	56	21	0	0	78	0.75
13288913--13288939	3	9.0	3	100	0	54	33	0	0	66	0.92
13289057--13289115	15	4.4	14	79	16	54	74	6	1	16	1.11
13289059--13289116	24	2.4	23	78	15	64	75	6	1	15	1.09
13289075--13289107	12	2.7	13	86	13	52	72	12	0	15	1.12
13289059--13289148	26	3.7	24	77	11	76	74	6	3	15	1.16
13290077--13290106	15	2.1	15	93	6	53	63	10	0	26	1.26
13290244--13290410	40	4.2	40	78	13	166	37	17	17	26	1.92
13290367--13290508	73	2.0	72	84	1	185	35	22	14	26	1.93
13290636--13290733	39	2.5	39	80	8	117	36	15	15	32	1.89
13290666--13290755	40	2.3	40	86	1	119	40	16	14	28	1.88
13302886--13302923	19	2.1	19	85	14	53	18	5	5	71	1.25
13304488--13304544	3	18.7	3	96	3	105	66	0	0	33	0.92
13304542--13304570	15	2.0	15	93	6	51	62	10	0	27	1.28
13305338--13305412	32	2.4	31	82	6	89	48	13	5	33	1.65
13308578--13308609	2	16.0	2	93	0	55	46	0	3	50	1.17
13310864--13310891	11	2.5	11	100	0	56	53	0	0	46	1.00
13315536--13315565	10	3.1	10	95	4	53	36	0	0	63	0.95
13315538--13315567	9	3.2	9	95	4	51	36	0	0	63	0.95
13317436--13317524	27	3.2	27	63	20	65	37	13	6	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13317368--13317649	117	2.4	119	93	3	487	33	12	8	46	1.71
13317368--13317649	57	4.7	58	89	8	417	33	12	8	46	1.71
13317729--13317779	7	7.4	7	83	14	54	84	3	1	9	0.83
13317786--13317812	12	2.2	12	100	0	54	0	40	40	18	1.51
13318099--13318192	20	4.7	19	70	18	57	18	20	35	26	1.95
13318769--13318839	9	7.9	9	83	10	65	69	5	0	25	1.10
13319002--13319054	1	53.0	1	84	0	70	0	0	7	92	0.39
13318993--13319053	7	7.9	8	85	7	58	0	0	9	90	0.46
13318993--13319054	12	5.4	12	86	7	76	0	0	9	90	0.46
13318993--13319054	11	5.5	11	88	9	81	0	0	9	90	0.46
13319002--13319054	25	2.2	25	96	3	99	0	0	7	92	0.39
13319061--13319672	81	7.5	80	91	5	873	37	21	18	22	1.94
13319061--13319672	162	3.8	161	92	5	968	37	21	18	22	1.94
13319061--13319672	123	5.0	121	93	4	1016	37	21	18	22	1.94
13320904--13320969	25	2.5	25	90	7	96	4	15	0	80	0.87
13320904--13320977	28	2.6	28	85	8	89	5	14	0	79	0.90
13320904--13320970	26	2.5	27	85	9	93	4	14	0	80	0.86
13324911--13324999	27	3.2	27	63	20	65	37	13	6	42	1.71
13324786--13325124	117	2.8	118	91	6	522	33	13	7	45	1.71
13324786--13325124	57	5.7	58	85	11	454	33	13	7	45	1.71
13325204--13325259	7	8.3	7	84	13	57	85	3	1	8	0.78
13325264--13325289	12	2.2	12	100	0	52	0	42	38	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326232--13326303	9	8.0	9	81	10	67	68	5	0	26	1.12
13327084--13327157	28	2.5	31	74	12	84	39	9	4	47	1.55
13327179--13327253	30	2.5	31	82	18	90	53	5	6	34	1.50
13327595--13327708	32	3.6	32	68	15	85	50	4	0	44	1.28
13327781--13327818	20	1.9	20	100	0	76	63	0	0	36	0.95
13329604--13329661	24	2.4	24	100	0	116	34	22	12	31	1.91
13329840--13329875	16	2.2	16	90	0	54	41	0	0	58	0.98
13331252--13331279	3	9.3	3	100	0	56	67	0	0	32	0.91
13333075--13333128	22	2.4	23	81	9	67	53	7	1	37	1.40
13333075--13333128	23	2.3	23	84	6	65	53	7	1	37	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126