genome.fa.s667.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  78  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15857258--15857305	21	2.3	21	79	13	55	45	0	6	47	1.27
15857229--15857286	27	2.2	26	81	12	64	41	0	3	55	1.17
15857346--15857385	21	1.9	21	89	0	62	42	2	2	52	1.28
15857571--15857609	21	2.0	21	85	10	55	38	0	10	51	1.36
15860899--15860955	27	2.1	27	96	0	105	17	26	29	26	1.97
15861275--15861302	14	2.0	14	100	0	56	50	21	0	28	1.49
15861930--15862030	52	1.9	52	86	4	141	39	21	8	29	1.84
15865892--15866163	104	2.6	104	83	3	325	41	17	14	26	1.88
15866467--15866621	31	5.0	31	81	1	141	35	21	13	29	1.92
15866467--15866609	61	2.3	62	80	3	155	33	21	13	30	1.93
15866697--15866852	31	5.0	31	73	7	91	32	19	12	35	1.89
15867134--15867177	21	2.1	21	83	8	54	0	18	2	79	0.83
15877479--15877551	36	2.0	36	100	0	146	31	16	10	41	1.83
15879663--15879715	28	1.9	27	84	3	70	35	15	9	39	1.79
15879663--15879723	27	2.2	28	82	2	70	36	16	11	36	1.85
15887414--15887442	14	2.1	14	93	6	51	48	0	0	51	1.00
15887978--15888068	30	3.1	29	85	4	119	32	3	3	60	1.29
15889874--15889917	22	2.0	22	81	4	52	45	13	15	25	1.83
15894693--15894741	23	2.1	23	85	7	64	53	0	2	44	1.12
15895376--15895410	15	2.2	16	90	5	54	54	2	0	42	1.15
15905397--15905441	14	3.1	15	83	6	56	53	2	0	44	1.13
15905438--15905478	20	2.0	20	85	0	55	43	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15905491--15905532	12	3.2	13	80	6	50	26	0	2	71	0.98
15905492--15905540	19	2.6	19	77	6	55	28	0	2	69	1.00
15906246--15906279	15	2.4	14	90	5	50	67	0	2	29	1.05
15906479--15906512	2	17.0	2	93	0	59	52	0	0	47	1.00
15907026--15907061	19	1.9	19	88	5	56	44	0	0	55	0.99
15911196--15911234	11	3.5	11	85	0	51	28	7	0	64	1.21
15912012--15912073	28	2.2	29	82	5	81	46	1	6	45	1.38
15912157--15912225	29	2.4	29	83	9	90	50	2	0	46	1.16
15914634--15914673	19	2.1	19	95	0	71	47	20	22	10	1.79
15928646--15928710	19	3.4	20	77	14	75	64	0	0	35	0.94
15928693--15928732	21	1.9	21	89	0	62	50	0	0	50	1.00
15933709--15933749	3	14.0	3	94	5	75	31	0	0	68	0.90
15933709--15933749	20	2.0	20	95	4	73	31	0	0	68	0.90
15933753--15933797	6	7.5	6	94	0	63	24	0	15	60	1.36
15933749--15933797	18	2.7	18	87	0	71	24	0	16	59	1.37
15933749--15933815	30	2.2	30	91	0	107	17	0	16	65	1.27
15933753--15933803	18	2.8	18	80	11	59	21	0	15	62	1.32
15933795--15933823	6	5.0	6	91	8	51	0	0	13	86	0.58
15933749--15933809	24	2.5	24	89	5	88	19	0	16	63	1.30
15934763--15934803	21	2.0	21	85	0	55	21	0	2	75	0.92
15940174--15940205	2	16.0	2	100	0	64	50	0	0	50	1.00
15940424--15940766	165	2.1	166	84	1	438	34	10	10	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15942274--15942350	28	2.8	28	85	0	91	24	7	16	50	1.72
15943198--15943260	23	2.8	22	72	15	65	26	41	6	25	1.79
15951901--15951943	21	2.0	21	100	0	86	13	37	27	20	1.91
15951903--15951949	21	2.2	21	92	0	76	14	40	25	19	1.90
15953335--15953367	16	2.1	16	88	11	50	60	3	0	36	1.12
15953401--15953465	26	2.6	25	79	13	62	46	3	4	46	1.39
15953645--15953685	22	1.9	21	90	5	64	36	0	2	60	1.10
15953734--15953778	20	2.2	20	84	7	56	44	0	2	53	1.13
15954177--15954232	22	2.4	23	77	16	62	50	1	0	48	1.11
15954852--15954881	14	2.2	14	94	5	53	60	0	0	40	0.97
15955945--15955983	15	2.6	15	100	0	78	35	0	5	58	1.20
15957667--15957702	16	2.2	16	90	0	54	61	5	0	33	1.19
15957985--15958026	22	1.9	22	90	0	66	35	0	2	61	1.09
15958520--15958571	19	2.7	20	84	6	70	51	0	0	48	1.00
15959188--15959218	14	2.2	14	94	0	53	61	0	0	38	0.96
15960456--15960498	14	3.0	14	86	3	50	48	0	9	41	1.35
15961647--15962907	439	2.9	437	87	2	1825	30	15	18	35	1.92
15963104--15963171	30	2.3	30	82	5	84	33	22	7	36	1.82
15967222--15967264	10	4.0	11	82	14	54	53	0	0	46	1.00
15970277--15970409	47	2.8	47	87	0	185	38	16	14	30	1.88
15975686--15976325	212	3.0	213	80	7	765	34	9	10	45	1.72
15976117--15976615	235	2.1	235	83	2	617	34	9	9	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15980803--15981403	204	3.0	199	80	3	650	35	12	11	41	1.79
15980835--15981463	202	3.1	199	80	4	708	34	11	11	41	1.78
15981799--15981837	17	2.2	18	86	4	53	12	15	5	66	1.41
15982411--15982461	20	2.5	19	75	12	57	72	5	3	17	1.20
15982472--15982547	9	7.8	9	70	15	53	59	3	2	34	1.30
15982506--15982559	19	2.8	19	80	2	54	55	5	0	38	1.23
15982507--15982583	18	4.3	18	68	11	50	57	5	0	37	1.21
15982601--15982631	9	3.4	9	90	0	53	61	6	0	32	1.21
15982598--15982640	18	2.4	17	81	11	59	58	6	0	34	1.25
15982736--15982780	20	2.2	20	88	7	65	60	6	2	31	1.35
15982792--15982857	26	2.5	25	76	9	60	57	1	3	37	1.23
15982944--15983015	27	2.6	27	82	8	92	58	2	5	33	1.36
15983000--15983034	10	3.4	10	92	4	52	74	8	2	14	1.17
15983030--15983068	17	2.2	18	86	13	55	61	5	0	33	1.18
15983200--15983243	20	2.1	21	84	12	56	38	6	6	47	1.57
15983327--15983486	21	8.5	17	68	20	70	33	2	3	60	1.28
15983441--15983488	9	5.0	9	85	10	51	37	2	4	56	1.30
15983435--15983485	19	2.6	19	84	3	66	33	1	3	60	1.26
15983902--15983941	18	2.2	18	91	8	64	45	0	5	50	1.23
15984172--15984340	62	2.8	60	82	9	200	40	13	4	40	1.66
15985010--15985064	25	2.2	24	84	6	74	54	3	1	40	1.28
15985715--15985868	62	2.5	63	81	6	154	39	14	4	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987134--15987169	18	2.0	18	88	0	54	63	0	2	33	1.08
16005247--16005272	2	13.0	2	100	0	52	50	0	0	50	1.00
16005491--16005524	16	2.2	15	89	5	50	35	0	0	64	0.94
16006408--16006479	29	2.4	31	84	11	87	50	1	0	48	1.09
16006765--16006833	29	2.3	29	85	5	84	53	0	2	43	1.15
16006789--16006855	29	2.2	31	82	12	77	50	0	0	49	1.00
16007274--16007327	18	2.8	21	81	16	71	57	1	0	40	1.09
16007317--16007391	31	2.5	31	83	12	102	46	0	0	53	1.00
16017012--16017071	27	2.2	27	84	3	75	36	16	5	41	1.70
16019178--16019202	2	12.5	2	100	0	50	52	48	0	0	1.00
16020777--16020845	36	1.9	36	85	5	95	68	0	1	30	0.99
16020784--16020876	39	2.4	38	85	7	116	62	0	1	36	1.03
16021841--16022016	87	2.0	87	88	0	262	34	15	23	26	1.95
16026359--16026383	12	2.1	12	100	0	50	56	0	0	44	0.99
16026399--16026433	18	1.9	18	88	0	52	40	0	2	57	1.14
16026536--16026566	12	2.6	12	94	0	53	25	0	9	64	1.24
16033652--16033730	28	3.3	22	73	16	52	64	0	1	34	1.02
16033649--16033719	28	2.5	28	83	0	97	66	0	0	33	0.92
16033738--16033814	16	4.6	16	68	15	57	55	1	0	42	1.07
16033595--16033789	94	2.1	93	80	14	213	60	0	1	37	1.10
16034117--16034155	20	1.9	20	84	5	51	53	2	2	41	1.28
16034321--16034399	18	4.2	18	75	9	68	32	7	0	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16040365--16040393	7	4.1	7	100	0	58	27	0	0	72	0.85
16040395--16040437	12	3.7	12	75	6	52	51	0	4	44	1.22
16040430--16040473	20	2.2	20	87	0	61	50	2	0	47	1.13
16048482--16048538	27	2.2	27	84	6	73	56	22	7	14	1.62
16049748--16049774	2	13.5	2	100	0	54	48	0	0	51	1.00
16050404--16050444	19	2.0	21	86	9	59	29	7	17	46	1.74
16051231--16051266	14	2.5	15	86	9	56	50	0	2	47	1.15
16051619--16051680	29	2.0	33	84	12	87	50	4	6	38	1.50
16057009--16057041	2	17.0	2	93	6	59	48	0	0	51	1.00
16058561--16058590	15	2.0	15	93	0	51	33	13	16	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126