Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  88  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17325542--17325576
17
2.1
17
88
0
52
28
5
5
60
1.43
17327928--17327962
2
17.5
2
90
0
52
48
2
2
45
1.32
17330161--17330189
15
2.0
15
93
6
51
75
0
17
6
1.01
17331046--17331131
42
2.0
42
100
0
172
30
3
16
50
1.62
17331051--17331121
20
3.3
23
66
22
71
30
1
14
53
1.49
17333425--17333463
18
2.0
20
85
9
55
5
20
2
71
1.17
17336944--17336972
2
14.5
2
100
0
58
48
0
0
51
1.00
17339720--17339751
3
10.7
3
100
0
64
0
0
65
34
0.93
17339786--17339810
7
3.6
7
100
0
50
76
0
12
12
1.04
17339785--17339818
14
2.4
14
85
0
50
79
0
11
8
0.94
17346469--17346531
32
2.0
32
96
0
117
42
19
9
28
1.82
17349646--17349681
17
2.1
18
89
5
56
58
0
0
41
0.98
17349851--17349887
16
2.2
17
95
4
67
59
0
0
40
0.97
17350142--17350178
16
2.2
18
85
9
51
59
5
0
35
1.20
17350452--17350479
14
2.0
14
100
0
56
42
7
0
50
1.30
17351635--17351688
25
2.2
25
93
0
90
46
7
11
35
1.67
17351775--17351800
2
13.0
2
100
0
52
50
0
0
50
1.00
17353891--17353958
33
2.1
33
97
0
127
29
22
14
33
1.94
17357213--17357269
30
1.9
30
85
7
80
64
0
3
31
1.10
17357564--17357592
2
14.5
2
100
0
58
48
0
0
51
1.00
17359945--17360343
199
2.0
199
98
0
762
35
18
18
27
1.94
17363015--17363063
15
3.1
16
70
24
50
26
0
14
59
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17363975--17364029
27
2.0
27
100
0
110
29
3
10
56
1.51
17364849--17364889
21
2.0
21
90
0
64
51
9
4
34
1.56
17366353--17366400
15
2.9
17
79
14
55
77
2
16
4
1.03
17366355--17366392
18
2.1
18
85
9
51
81
2
13
2
0.90
17366347--17366400
16
3.3
16
80
12
56
75
1
18
3
1.03
17369087--17369128
22
2.0
22
85
4
59
2
21
4
71
1.16
17370007--17370068
3
21.7
3
80
12
69
69
0
0
30
0.89
17372535--17372586
21
2.5
20
81
6
59
28
1
3
65
1.21
17376290--17378705
368
6.6
368
77
6
1878
29
19
27
23
1.98
17384234--17384258
2
12.5
2
100
0
50
48
0
0
52
1.00
17385046--17385078
2
16.5
2
100
0
66
48
0
0
51
1.00
17386367--17386394
12
2.3
12
100
0
56
32
0
7
60
1.24
17387705--17387784
27
3.0
27
80
5
74
50
2
3
43
1.33
17389029--17389095
29
2.4
27
87
5
89
53
1
1
43
1.19
17390162--17390191
13
2.2
14
94
5
53
33
0
6
60
1.23
17390161--17390193
14
2.3
15
85
15
52
33
0
6
60
1.21
17392406--17392436
4
7.8
4
92
0
53
19
0
3
77
0.90
17398173--17398232
29
2.1
29
84
6
77
46
8
5
40
1.56
17403313--17403368
15
3.6
16
76
13
64
62
0
3
33
1.12
17403407--17403453
2
23.5
2
91
0
67
48
4
2
44
1.34
17413622--17413675
23
2.4
22
81
9
63
51
7
1
38
1.41
17413744--17413789
15
3.1
15
81
15
51
76
2
17
4
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17416448--17416482
17
2.1
17
88
0
52
60
5
5
28
1.43
17422322--17422346
10
2.5
10
100
0
50
60
0
8
32
1.26
17423647--17424183
59
9.1
57
84
6
644
35
13
7
44
1.72
17423647--17424183
177
3.0
175
88
5
753
35
13
7
44
1.72
17424183--17424269
5
16.8
5
73
17
54
75
1
6
16
1.07
17424293--17424325
4
8.8
4
87
12
52
75
0
0
24
0.80
17424207--17424320
18
6.2
19
67
22
64
72
2
3
21
1.11
17424859--17424884
10
2.6
10
100
0
52
57
23
0
19
1.40
17425342--17425390
17
2.9
17
76
11
55
73
0
4
22
1.00
17425337--17425401
6
10.2
6
75
15
51
75
0
3
21
0.94
17425622--17426084
42
11.1
41
89
2
638
36
22
17
24
1.94
17425622--17426084
83
5.5
82
88
2
638
36
22
17
24
1.94
17425622--17426084
125
3.7
124
88
2
660
36
22
17
24
1.94
17427346--17427414
10
6.9
10
87
9
88
2
10
0
86
0.66
17427345--17427418
21
3.7
20
85
8
105
4
10
0
85
0.73
17427346--17427414
31
2.3
28
83
11
77
2
10
0
86
0.66
17427344--17427443
28
3.7
27
75
13
89
4
12
0
84
0.76
17427366--17427442
11
6.6
11
81
16
93
2
12
0
84
0.73
17427344--17427415
1
72.0
1
77
0
63
2
9
0
87
0.64
17427346--17427439
10
8.6
11
78
18
63
4
12
0
82
0.80
17431350--17431972
59
10.4
59
83
8
749
34
12
9
44
1.74
17431350--17431981
236
2.6
239
87
5
857
34
12
9
43
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17432014--17432101
5
17.8
5
77
11
60
77
1
5
15
1.02
17432013--17432102
22
4.0
22
74
11
74
77
1
5
15
1.00
17432050--17432164
11
10.0
11
68
21
58
72
3
2
21
1.12
17433151--17433243
41
2.2
43
88
7
138
77
0
5
17
0.95
17433153--17433227
6
12.7
6
80
8
82
78
0
2
18
0.86
17434009--17434043
2
17.5
2
100
0
70
48
0
0
51
1.00
17435550--17435598
24
2.0
24
96
0
89
40
4
14
40
1.64
17435933--17435966
17
2.0
17
88
11
52
70
2
5
20
1.21
17436229--17436261
2
16.5
2
100
0
66
51
0
0
48
1.00
17436464--17436504
14
3.1
14
79
13
50
41
0
0
58
0.98
17441301--17441353
24
2.1
24
82
6
61
15
3
9
71
1.26
17443131--17443160
15
1.9
16
93
6
53
36
0
0
63
0.95
17443567--17443637
22
3.1
22
71
20
56
50
2
0
46
1.16
17443745--17443839
15
5.6
15
70
22
55
47
1
0
51
1.07
17443804--17443868
22
2.9
21
77
18
67
49
0
0
50
1.00
17445705--17445745
15
2.6
16
81
14
50
46
4
9
39
1.58
17449330--17449367
2
19.0
2
88
0
58
44
0
2
52
1.14
17456114--17456140
8
3.4
8
100
0
54
85
0
0
14
0.61
17459985--17460023
16
2.4
16
86
0
51
53
0
0
46
1.00
17465532--17465748
4
52.0
4
65
24
51
47
3
2
46
1.34
17465679--17465892
53
3.9
53
72
16
147
48
3
0
46
1.26
17470736--17471070
167
2.0
167
96
0
616
39
17
12
30
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17472949--17472987
20
2.0
20
89
0
60
25
17
15
41
1.89
17478824--17478859
20
1.9
20
88
11
58
41
0
5
52
1.24
17478992--17479059
34
2.0
34
94
0
118
33
7
10
48
1.65
17479535--17479572
15
2.5
15
91
0
58
68
0
28
2
1.03
17479539--17479587
25
2.0
25
84
8
64
69
2
22
6
1.21
17483225--17483249
4
6.2
4
100
0
50
76
0
0
24
0.80
17486928--17487012
41
2.1
41
90
0
134
29
17
14
38
1.89
17487030--17487072
2
21.5
2
95
0
77
48
2
0
48
1.14
17490086--17490141
5
11.6
5
75
21
57
64
0
1
33
1.04
17490086--17490141
11
5.8
10
75
23
57
64
0
1
33
1.04
17490086--17490141
19
3.2
18
85
9
80
64
0
1
33
1.04
17490086--17490141
24
2.3
24
87
6
78
64
0
1
33
1.04
17490243--17490325
30
2.7
32
77
7
98
45
4
6
43
1.49
17494825--17494875
21
2.5
21
93
3
86
49
0
0
50
1.00
17499891--17499929
16
2.2
17
86
13
53
53
0
5
41
1.23
17502676--17502750
38
1.9
39
94
2
134
37
8
29
25
1.84
17502794--17502845
24
2.2
24
100
0
104
21
13
36
28
1.91
17504662--17504935
138
2.0
136
97
2
516
31
13
12
42
1.81
17504685--17505112
151
3.0
137
86
9
503
28
12
14
43
1.83
17504849--17505153
151
2.0
151
96
0
565
28
12
16
42
1.84
17505526--17505577
2
26.0
2
88
0
77
50
5
0
44
1.26
17507518--17507544
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17514602--17514643
11
3.8
11
81
12
59
26
0
2
71
0.98
17515709--17515960
125
2.0
125
97
1
479
28
20
14
35
1.92
17519876--17519913
16
2.2
18
86
9
53
26
2
2
68
1.16
17520453--17520500
2
24.0
2
86
0
69
45
2
2
50
1.25
17520647--17520691
23
2.0
23
86
4
65
28
8
6
55
1.56
17525960--17526038
30
2.6
30
83
2
104
46
0
12
40
1.42
17532424--17532465
22
1.9
22
85
0
57
40
11
2
45
1.54
17532431--17532474
22
2.0
22
86
4
61
38
9
2
50
1.47
17533536--17533578
2
22.0
2
81
13
54
44
2
0
53
1.13
17534688--17534722
17
2.1
17
94
0
61
22
17
2
57
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126