genome.fa.s667.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  19  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4408343--4408389	16	2.8	16	90	6	67	8	10	0	80	0.89
4408343--4408394	27	1.9	27	84	7	70	9	13	0	76	1.01
4413282--4413347	31	2.1	31	82	0	78	46	16	13	22	1.82
4413707--4413772	6	10.5	6	78	10	53	80	1	3	15	0.91
4414106--4414130	12	2.1	12	100	0	50	8	0	40	52	1.31
4416009--4416054	19	2.5	19	76	16	53	63	4	4	28	1.33
4417020--4417058	22	1.9	20	85	15	53	69	2	0	28	1.02
4417303--4417863	208	2.7	212	81	6	651	56	9	10	23	1.63
4417495--4417938	215	2.1	215	84	5	569	56	10	10	23	1.63
4417885--4417912	14	2.0	14	100	0	56	57	0	14	28	1.38
4418380--4418417	17	2.2	17	86	9	51	18	5	0	76	0.97
4419370--4419405	5	6.8	5	93	6	54	63	0	0	36	0.94
4419372--4419411	6	7.2	6	94	2	50	67	0	0	32	0.91
4419358--4419414	12	5.0	11	81	14	62	61	0	3	35	1.13
4419407--4419454	22	2.2	21	85	10	62	50	0	0	50	1.00
4419621--4419725	56	1.9	55	88	7	162	57	7	3	31	1.45
4430112--4430274	9	17.3	9	66	13	62	56	4	1	37	1.29
4430192--4430276	19	4.3	19	76	10	73	56	4	2	36	1.33
4430167--4430276	20	5.8	19	74	12	75	59	5	1	33	1.31
4430436--4430506	24	3.0	24	73	10	65	25	4	4	66	1.28
4430593--4430652	21	3.0	20	76	11	59	43	5	6	45	1.52
4430621--4430674	16	2.9	18	81	13	58	40	5	3	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4430720--4430812	28	3.5	26	73	11	89	32	5	2	60	1.31
4430800--4430868	9	7.7	9	79	11	70	47	1	2	47	1.25
4430801--4430912	18	5.9	18	76	17	61	47	0	4	47	1.28
4430816--4430867	26	2.0	27	88	11	81	50	0	3	46	1.20
4430800--4430863	8	7.4	8	78	15	65	50	1	3	45	1.27
4430817--4430904	9	9.3	10	73	17	55	46	0	5	47	1.26
4430839--4430906	21	3.5	20	76	20	72	44	0	5	50	1.26
4430814--4430908	10	9.8	10	77	10	58	46	0	5	48	1.24
4430967--4431028	20	3.0	21	79	11	74	37	0	8	54	1.30
4430968--4431028	11	6.0	10	81	14	63	37	0	8	54	1.31
4430968--4431022	10	5.3	11	81	16	55	40	0	9	50	1.34
4430967--4431027	21	2.9	22	85	9	83	36	0	8	55	1.30
4430994--4431055	20	3.0	20	85	2	70	30	1	8	59	1.36
4430982--4431027	10	4.4	10	86	8	65	30	0	8	60	1.26
4434534--4434587	2	27.5	2	84	3	65	48	7	0	44	1.31
4447235--4448970	347	5.0	347	93	1	3003	27	15	12	44	1.82
4458608--4458632	12	2.1	12	100	0	50	68	0	0	32	0.90
4460265--4460320	23	2.4	23	82	5	69	42	1	1	53	1.21
4460725--4460887	67	2.4	68	73	12	152	39	5	4	50	1.45
4460936--4460987	27	1.9	27	84	7	70	48	0	1	50	1.12
4461181--4461210	14	2.1	15	93	6	53	70	0	0	30	0.88
4464603--4464867	96	2.8	93	78	13	265	50	4	4	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4465913--4466178	88	3.0	86	83	5	311	50	4	7	37	1.51
4466619--4466656	19	2.0	20	89	5	60	39	5	0	55	1.23
4469053--4469093	21	2.0	21	85	0	55	36	2	0	60	1.10
4476494--4476581	16	5.9	15	73	23	55	50	1	0	48	1.08
4477171--4477196	2	13.0	2	100	0	52	50	0	0	50	1.00
4479143--4479194	26	2.0	26	100	0	104	42	0	15	42	1.47
4479886--4479917	2	16.0	2	100	0	64	50	0	0	50	1.00
4482725--4482753	2	14.5	2	100	0	58	48	0	0	51	1.00
4483172--4483204	2	17.0	2	93	6	59	48	0	0	51	1.00
4489274--4489700	49	8.8	48	79	5	387	40	15	12	31	1.85
4489295--4489707	194	2.1	194	81	4	483	39	15	12	32	1.85
4503666--4503711	14	3.4	14	77	11	51	2	63	0	34	1.07
4506627--4506663	16	2.2	17	86	13	51	78	0	0	21	0.75
4513161--4513186	10	2.6	10	100	0	52	73	0	0	26	0.84
4513317--4513386	12	5.8	12	70	8	52	58	15	2	22	1.50
4513366--4513450	14	6.4	14	76	6	61	44	21	10	23	1.83
4513389--4513450	27	2.3	27	82	0	79	41	22	11	24	1.86
4513365--4513458	40	2.3	40	81	3	100	44	21	10	23	1.83
4518414--4518521	36	3.0	36	76	10	112	31	7	24	37	1.83
4518417--4518605	37	5.1	37	74	3	121	34	7	19	38	1.81
4518410--4518643	74	3.2	74	76	7	199	33	8	19	38	1.83
4518949--4518978	13	2.2	14	94	5	53	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4520705--4520759	19	2.8	19	86	2	74	10	1	43	43	1.50
4520748--4520852	7	16.0	7	67	16	64	17	2	38	41	1.64
4520751--4520815	13	5.2	13	75	17	57	16	0	38	44	1.48
4522392--4522718	143	2.3	140	79	9	342	42	12	10	34	1.77
4522392--4522770	143	2.7	143	79	7	337	43	12	10	34	1.76
4522974--4523033	30	2.0	30	84	12	79	31	6	11	50	1.65
4524546--4524583	3	12.7	3	100	0	76	68	0	0	31	0.90
4530954--4530989	16	2.2	16	100	0	72	41	19	5	33	1.75
4536044--4536082	18	2.2	18	100	0	78	7	0	30	61	1.24
4539021--4539066	25	1.9	23	86	8	65	45	10	2	41	1.51
4541524--4541559	18	1.9	19	88	5	56	41	8	16	33	1.78
4552874--4552910	18	2.1	18	100	0	74	27	51	0	21	1.48
4556191--4556222	14	2.2	15	94	5	57	6	6	0	87	0.67
4556191--4556237	23	2.0	23	84	8	60	6	6	2	85	0.82
4556192--4556230	14	2.8	13	85	14	51	5	7	0	87	0.68
4556333--4556374	17	2.5	17	73	3	50	61	2	0	35	1.09
4556404--4556532	57	2.2	59	83	8	156	52	9	6	31	1.58
4556583--4557187	308	2.0	301	89	3	935	36	11	11	40	1.79
4557913--4557938	4	6.5	4	100	0	52	46	0	0	53	1.00
4559564--4559605	20	2.1	20	90	0	66	52	4	14	28	1.62
4568440--4568562	44	2.8	44	87	2	167	19	15	21	43	1.87
4568538--4568865	42	7.9	42	83	2	358	25	11	19	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4568540--4568844	124	2.4	124	83	3	371	25	10	18	44	1.82
4569877--4570176	60	5.1	60	83	6	360	47	6	9	36	1.62
4569877--4570172	118	2.5	117	84	4	373	47	6	9	36	1.61
4570159--4570203	24	1.9	24	81	4	56	35	8	8	46	1.66
4582614--4582646	3	11.0	3	93	0	57	30	33	3	33	1.73
4584322--4584377	8	7.0	8	78	13	53	80	1	7	10	0.97
4584325--4584370	8	5.8	8	87	12	60	78	2	8	10	1.05
4584325--4584376	14	3.4	15	80	19	63	80	1	7	9	0.97
4584322--4584378	15	3.6	16	80	15	64	78	1	8	10	1.02
4585354--4585389	18	1.9	19	88	5	56	41	8	8	41	1.65
4585184--4585505	63	5.1	61	81	11	348	53	5	8	32	1.54
4585547--4586161	308	2.0	304	91	3	1002	35	10	11	41	1.77
4596360--4596405	10	4.6	10	84	10	58	89	2	4	4	0.66
4597412--4597525	44	2.6	44	87	2	158	22	14	17	45	1.84
4597420--4597893	42	11.3	43	80	8	211	24	12	19	44	1.84
4597512--4597875	42	8.9	41	83	4	351	25	11	20	43	1.85
4597510--4597875	162	2.2	161	80	6	412	25	11	19	43	1.85
4598905--4599194	58	4.9	60	85	5	369	48	6	10	34	1.63
4598905--4599195	118	2.5	118	89	2	417	48	6	9	35	1.63
4600689--4600829	59	2.4	57	81	7	140	21	3	21	53	1.61
4609134--4609521	61	6.4	61	79	11	379	50	5	8	35	1.57
4609461--4609497	13	2.8	13	95	0	65	67	0	10	21	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4609572--4610182	308	2.0	307	88	2	922	36	11	11	41	1.77
4613105--4613138	15	2.3	15	94	0	59	26	23	0	50	1.50
4621524--4621580	16	3.5	16	73	4	51	31	7	1	59	1.34
4621687--4621727	7	5.1	8	83	16	50	75	2	9	12	1.13
4621688--4621733	24	2.0	24	91	4	76	76	2	10	10	1.12
4622338--4622385	20	2.4	20	89	0	69	8	33	18	39	1.81
4622542--4622577	17	2.2	17	90	9	58	61	0	5	33	1.19
4622542--4622667	58	2.1	58	81	11	139	49	5	10	34	1.60
4622604--4622735	68	2.0	66	87	3	192	50	6	9	34	1.60
4622670--4622847	61	3.0	60	85	6	247	50	6	9	33	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126