genome.fa.s667.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  17  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4044460--4044522	33	1.9	33	83	0	81	50	3	1	44	1.27
4044603--4044658	25	2.3	24	84	9	69	57	0	0	42	0.99
4044620--4044680	20	3.2	20	79	11	74	59	0	0	40	0.98
4052075--4052100	3	8.7	3	100	0	52	30	0	0	69	0.89
4052754--4052782	13	2.1	14	93	6	51	48	0	0	51	1.00
4052865--4052889	13	1.9	13	100	0	50	64	0	0	36	0.94
4052867--4052947	35	2.3	33	82	17	94	55	0	0	44	0.99
4052992--4053016	13	1.9	13	100	0	50	64	0	0	36	0.94
4052795--4053054	127	2.0	128	99	0	513	53	1	1	43	1.19
4053026--4053066	16	2.5	17	88	11	59	68	0	0	31	0.90
4055458--4055504	19	2.5	18	86	6	58	25	4	12	57	1.54
4062608--4062639	14	2.4	14	94	5	57	50	6	0	43	1.27
4066087--4066133	19	2.4	19	83	13	60	23	10	10	55	1.65
4066959--4067035	29	2.7	29	82	7	88	38	10	1	49	1.45
4067061--4067120	30	2.0	29	84	9	77	46	5	10	38	1.59
4067347--4067398	2	26.0	2	92	0	86	46	0	3	50	1.20
4069546--4069775	55	4.2	57	82	3	224	53	10	5	30	1.57
4069625--4069670	23	2.0	23	91	4	76	63	8	2	26	1.35
4069546--4069775	110	2.1	109	83	4	284	53	10	5	30	1.57
4069730--4069775	24	2.0	23	86	4	65	50	8	4	36	1.53
4069743--4069806	31	2.1	31	87	0	92	50	12	7	29	1.68
4071041--4071093	22	2.4	21	77	22	56	56	15	5	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4071237--4071297	23	2.7	22	78	14	79	50	13	4	31	1.62
4071400--4071466	5	13.8	5	76	13	52	80	2	1	14	0.90
4071393--4071460	22	3.1	21	79	14	66	77	2	2	16	1.00
4071387--4071452	7	8.9	7	73	18	53	77	1	3	18	0.98
4071392--4071466	19	3.6	19	74	19	69	80	2	2	14	0.94
4072469--4072520	14	3.8	13	75	25	54	73	1	1	23	1.04
4072900--4073010	44	2.6	44	83	10	135	45	8	5	40	1.56
4072940--4073043	41	2.5	41	82	7	111	47	8	6	37	1.61
4080425--4080503	34	2.3	34	86	4	106	32	15	15	36	1.88
4080764--4080803	1	40.0	1	100	0	80	0	0	0	100	0.00
4081812--4081863	26	2.1	25	85	7	70	42	7	5	44	1.57
4082015--4082077	25	2.5	24	82	12	65	47	9	1	41	1.45
4083165--4083507	43	8.0	43	82	2	357	44	16	13	26	1.84
4083164--4083505	129	2.7	129	86	0	459	44	16	13	26	1.83
4093254--4093308	20	2.7	19	86	8	65	78	1	1	18	0.94
4093274--4093308	11	3.1	11	91	4	52	82	0	2	14	0.77
4093870--4093924	21	2.6	21	81	15	69	7	12	16	63	1.50
4094008--4094042	13	2.8	12	83	8	52	34	11	5	48	1.63
4096919--4096962	3	14.7	3	100	0	88	34	0	0	65	0.93
4107305--4107329	6	4.2	6	100	0	50	84	0	0	16	0.63
4108117--4108168	20	2.6	21	81	9	63	23	1	5	69	1.20
4108716--4108806	6	15.2	6	75	4	58	21	2	12	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4108718--4108806	12	7.4	12	77	5	81	20	2	12	65	1.36
4108716--4108806	18	5.1	18	72	5	76	21	2	12	63	1.38
4109825--4109886	6	9.7	6	80	13	61	12	1	3	82	0.87
4109831--4109886	19	2.8	19	89	5	76	14	0	3	82	0.81
4109831--4109886	13	4.2	13	80	17	62	14	0	3	82	0.81
4109966--4110026	24	2.6	24	90	10	92	31	3	13	52	1.56
4110061--4110109	26	1.9	25	87	4	71	28	0	10	61	1.29
4110070--4110119	26	1.9	26	84	8	66	30	0	10	60	1.30
4110089--4110152	19	3.4	18	84	4	83	29	3	9	57	1.45
4110118--4110160	19	2.6	15	85	14	50	25	6	13	53	1.65
4110149--4110222	31	2.3	32	90	2	114	31	4	14	50	1.62
4110440--4110485	20	2.3	20	81	7	58	52	6	0	41	1.27
4115038--4115076	17	2.4	16	83	8	51	84	0	5	10	0.76
4116179--4116260	22	3.7	22	74	6	76	36	7	9	46	1.65
4116429--4116481	18	2.9	18	73	15	54	32	11	11	45	1.76
4116640--4116771	17	7.7	18	68	7	60	34	16	11	37	1.85
4116730--4116842	35	3.3	33	71	7	100	34	12	12	40	1.80
4117425--4117483	17	3.2	18	76	9	57	22	3	10	64	1.39
4117425--4117491	19	3.6	19	73	13	59	20	2	10	65	1.36
4118651--4118696	24	1.9	24	86	8	67	26	4	13	56	1.55
4118695--4118744	19	2.4	21	77	19	59	34	4	12	50	1.58
4118713--4118749	19	2.0	18	94	5	65	35	5	10	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4118841--4118904	26	2.4	27	86	5	94	26	7	14	51	1.69
4118890--4118938	19	2.5	20	90	3	73	34	6	14	44	1.70
4119145--4119193	19	2.5	19	77	9	55	55	10	0	34	1.34
4119891--4119969	38	2.2	36	84	6	97	31	20	12	35	1.90
4124152--4124213	3	21.0	3	96	3	117	33	0	0	66	0.92
4124969--4125196	113	2.0	113	88	0	339	39	17	10	32	1.84
4126685--4126723	15	2.5	15	87	4	51	2	10	5	82	0.93
4127544--4127590	4	11.8	4	78	17	53	2	0	21	76	0.89
4127544--4127591	25	2.0	25	95	4	89	2	0	20	77	0.88
4127640--4127855	46	4.7	46	83	2	247	40	12	12	33	1.81
4128390--4128423	10	3.3	10	92	8	59	11	8	0	79	0.94
4128914--4129105	91	2.1	93	78	6	203	22	13	11	52	1.73
4128934--4129156	90	2.5	91	81	4	263	21	14	13	50	1.77
4131167--4131521	177	2.0	177	84	3	464	29	19	13	36	1.91
4136077--4136113	8	4.6	8	86	0	56	43	0	0	56	0.99
4136068--4136129	14	4.2	15	78	10	65	48	0	0	51	1.00
4136071--4136131	16	4.0	16	79	10	65	50	0	0	49	1.00
4141613--4141643	15	2.1	15	100	0	62	41	12	12	32	1.81
4142983--4143038	28	2.0	28	89	0	85	39	14	5	41	1.68
4143184--4143219	2	18.0	2	100	0	72	0	50	0	50	1.00
4144795--4144828	2	17.0	2	93	0	59	52	0	47	0	1.00
4145114--4145153	17	2.3	18	80	20	50	55	2	5	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4146516--4146651	69	2.0	70	85	7	188	28	5	20	44	1.75
4147194--4147238	12	3.8	12	80	8	56	24	4	0	71	1.05
4147821--4147860	20	2.0	20	90	0	62	55	10	5	30	1.54
4147827--4147870	20	2.2	20	83	0	52	61	11	2	25	1.41
4148173--4148224	21	2.4	21	81	12	61	28	13	0	57	1.36
4148244--4148287	13	3.1	14	83	6	54	15	2	6	75	1.12
4149269--4149302	4	8.5	4	87	12	52	23	0	0	76	0.79
4149273--4149303	16	1.9	16	100	0	62	22	0	0	77	0.77
4154749--4154786	13	2.7	15	88	12	62	81	0	18	0	0.69
4154743--4154789	20	2.3	20	85	7	60	82	0	14	2	0.75
4155528--4155559	14	2.4	14	94	5	57	68	0	0	31	0.90
4156544--4156576	3	11.0	3	100	0	66	66	0	0	33	0.92
4163405--4163563	83	1.9	83	83	2	203	32	16	16	33	1.92
4163742--4163845	49	2.1	48	84	5	129	31	8	16	43	1.78
4164848--4164889	10	4.3	10	82	14	52	73	9	9	7	1.24
4165856--4165892	17	2.2	17	90	9	58	67	0	0	32	0.91
4165865--4165899	17	2.1	17	88	0	52	74	0	2	22	0.95
4165861--4165925	11	5.5	11	71	18	51	72	0	1	26	0.94
4165919--4165950	12	2.7	12	95	0	55	68	0	9	21	1.17
4166287--4166326	21	1.9	21	89	0	62	77	2	10	10	1.08
4167216--4167468	131	1.9	132	88	2	384	35	16	15	32	1.90
4167466--4167618	77	2.0	76	90	1	243	35	13	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167765--4167815	21	2.5	20	78	18	59	37	1	25	35	1.67
4168022--4168052	11	2.7	12	95	5	55	0	12	0	87	0.55
4171968--4171992	1	25.0	1	100	0	50	100	0	0	0	0.00
4172304--4172335	14	2.1	16	88	11	50	59	18	0	21	1.38
4172647--4172692	16	3.0	16	84	12	69	43	0	0	56	0.99
4172652--4172696	14	3.3	13	81	9	54	40	0	0	60	0.97
4173077--4173137	31	2.0	31	100	0	122	34	16	22	26	1.95
4173377--4173440	29	2.2	29	83	5	76	39	12	0	48	1.41
4174200--4174280	39	2.1	39	92	0	135	34	35	8	20	1.84
4177526--4177595	24	2.9	24	93	0	113	27	12	31	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126