genome.fa.s667.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  92  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17988331--17988359	12	2.5	12	94	5	51	31	0	13	55	1.39
17988639--17988673	17	2.0	18	94	5	63	57	0	2	40	1.14
17991170--17991230	24	2.7	24	82	7	74	55	0	0	44	0.99
17991177--17991232	23	2.5	22	82	8	69	55	0	0	44	0.99
17991232--17991272	18	2.4	17	77	22	50	51	0	0	48	1.00
17991692--17991724	17	1.9	17	93	0	57	18	12	0	69	1.18
17992434--17992472	19	2.1	18	85	4	51	51	0	0	48	1.00
17996360--17996393	16	2.1	16	88	0	50	58	11	0	29	1.33
17998885--17998952	28	2.4	29	87	2	93	54	1	0	44	1.09
17998885--17998946	14	4.5	13	77	16	63	54	1	0	43	1.09
17998895--17998959	16	4.3	16	77	13	50	53	1	0	44	1.09
17999870--17999894	8	3.1	8	100	0	50	12	48	40	0	1.40
18001985--18002012	2	14.0	2	100	0	56	50	0	0	50	1.00
18002121--18002185	25	2.9	21	75	18	58	47	0	0	52	1.00
18002129--18002184	26	2.3	25	87	9	80	48	0	0	51	1.00
18002138--18002192	25	2.2	25	83	6	67	49	0	0	50	1.00
18003331--18003376	25	1.9	23	86	8	65	52	0	0	47	1.00
18005957--18006001	2	22.5	2	95	0	81	48	2	0	48	1.13
18007793--18007817	12	2.1	12	100	0	50	40	0	0	60	0.97
18008423--18008499	22	3.5	22	100	0	154	54	0	3	41	1.19
18015269--18015320	18	2.8	18	71	11	52	48	0	1	50	1.12
18019758--18019783	13	2.0	13	100	0	52	53	0	15	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18019791--18019842	23	2.3	23	80	3	61	34	5	3	55	1.42
18020275--18020311	20	2.0	19	85	15	51	5	18	0	75	0.99
18020333--18020380	19	2.5	19	82	0	60	72	2	20	4	1.11
18032026--18032065	20	2.0	20	100	0	80	45	30	15	10	1.78
18032170--18032975	368	2.2	368	86	1	1114	21	31	20	25	1.98
18039639--18039676	18	2.1	18	90	0	58	28	15	36	18	1.92
18042712--18042755	22	2.0	22	90	0	70	34	11	13	40	1.81
18046635--18046678	22	2.0	22	90	0	70	34	11	13	40	1.81
18049253--18049296	22	2.0	22	86	0	61	36	25	4	34	1.76
18054388--18054416	14	2.1	14	93	6	51	48	6	0	44	1.29
18054387--18054459	34	2.1	35	85	7	96	39	6	6	46	1.57
18054375--18054473	34	2.9	34	74	14	87	42	7	7	43	1.59
18056196--18056230	17	2.1	17	88	0	52	40	0	2	57	1.14
18056271--18056316	23	2.0	23	82	4	56	58	2	4	34	1.30
18056288--18056328	21	1.9	22	85	14	59	60	2	4	31	1.30
18057718--18057743	10	2.6	10	100	0	52	61	0	0	38	0.96
18058058--18058095	17	2.2	18	86	13	53	55	0	0	44	0.99
18058474--18058510	20	1.9	20	88	5	58	27	0	0	72	0.84
18061087--18061218	66	2.0	65	86	1	183	28	9	15	47	1.75
18065203--18065474	21	13.3	21	77	6	245	18	24	23	33	1.96
18066216--18066297	29	2.8	29	80	12	87	31	2	2	63	1.20
18066216--18066304	30	3.0	30	85	6	110	30	2	2	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18066230--18066319	33	2.8	31	80	13	103	28	1	4	65	1.19
18070343--18070367	13	1.9	13	100	0	50	48	0	0	52	1.00
18070876--18070919	18	2.4	19	81	11	56	50	0	2	47	1.13
18070983--18071072	29	3.1	28	76	9	92	36	1	4	57	1.26
18070972--18071072	9	10.6	9	73	10	67	37	1	3	56	1.29
18070993--18071079	19	4.6	19	74	5	77	34	1	5	58	1.29
18070972--18071093	10	12.3	10	74	9	72	38	1	4	55	1.29
18073541--18074387	225	3.8	221	79	7	879	34	14	22	28	1.93
18079578--18079647	36	1.9	36	100	0	140	41	20	5	32	1.75
18082200--18082234	17	2.1	17	89	5	54	20	11	17	51	1.75
18083341--18083583	42	5.9	42	79	3	215	19	20	22	37	1.94
18083431--18083586	63	2.5	63	81	0	213	19	20	22	37	1.94
18083339--18083593	21	12.3	21	76	3	158	19	20	22	36	1.95
18084335--18084416	29	2.8	29	80	12	87	31	2	2	63	1.20
18084335--18084423	30	3.0	30	85	6	110	30	2	2	65	1.17
18084349--18084438	33	2.8	31	80	13	103	28	1	4	65	1.19
18089271--18090181	332	2.7	333	85	2	1188	35	15	12	37	1.85
18098384--18098427	18	2.4	18	81	11	54	52	0	2	45	1.13
18098500--18098593	10	9.7	10	74	15	81	37	0	2	60	1.09
18098500--18098610	50	2.2	48	83	12	127	36	0	3	60	1.14
18098495--18098589	9	10.0	9	70	15	66	38	0	2	58	1.10
18099755--18100129	186	2.0	185	94	3	655	40	10	16	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100254--18100626	185	2.0	185	93	1	631	40	9	16	34	1.80
18101760--18102360	314	1.9	313	90	1	945	41	14	10	33	1.80
18103456--18103536	10	8.6	10	75	13	64	65	1	1	32	1.08
18103457--18103527	19	3.7	19	78	0	70	66	1	1	30	1.09
18103469--18103547	19	4.4	17	75	13	52	60	2	1	35	1.18
18103619--18103662	18	2.4	18	81	11	54	47	2	0	50	1.13
18104170--18104194	13	1.9	13	100	0	50	52	0	0	48	1.00
18108251--18108322	29	2.4	30	84	11	103	68	1	1	29	1.07
18109081--18109325	21	12.0	21	71	7	164	37	22	22	18	1.95
18110893--18110925	17	1.9	17	93	0	57	48	0	0	51	1.00
18110892--18110943	27	1.9	27	84	7	70	53	0	0	46	1.00
18114084--18114751	225	3.0	220	83	7	873	29	21	14	35	1.93
18113901--18114747	447	1.9	450	85	3	1175	29	22	14	34	1.93
18120031--18120068	17	2.2	17	86	9	51	39	0	0	60	0.97
18120025--18120069	24	1.9	24	86	4	65	40	0	0	60	0.97
18120220--18120260	2	20.5	2	89	0	64	46	2	2	48	1.28
18133083--18133202	3	36.7	3	70	21	57	30	5	1	63	1.25
18133090--18133256	46	3.6	47	74	17	129	29	5	2	61	1.33
18133083--18133222	26	5.3	26	72	11	99	30	5	2	62	1.28
18133170--18133251	20	4.3	19	73	11	60	28	4	3	63	1.32
18133622--18133685	6	9.8	6	78	21	67	14	1	1	82	0.81
18133622--18133695	14	5.4	14	82	11	100	14	1	1	82	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18133622--18133685	20	3.2	20	82	12	87	14	1	1	82	0.81
18133622--18133699	26	2.9	26	90	9	122	14	2	1	82	0.85
18133720--18134138	61	7.1	59	80	6	454	42	8	12	36	1.73
18133718--18134138	118	3.6	116	86	5	508	42	8	12	36	1.72
18133754--18134140	179	2.2	176	87	4	537	41	8	13	36	1.74
18135339--18135363	7	3.6	7	100	0	50	48	28	0	24	1.52
18142859--18142905	23	2.0	23	100	0	94	34	4	12	48	1.61
18145031--18145059	6	4.8	6	100	0	58	17	0	17	65	1.27
18149831--18149929	10	10.2	10	73	9	71	37	1	3	58	1.20
18149827--18149923	18	5.2	18	78	7	86	40	1	3	55	1.22
18149831--18149929	29	3.4	29	77	6	103	37	1	3	58	1.20
18149824--18149929	19	5.6	18	75	8	86	39	0	2	56	1.20
18151589--18151967	188	2.0	188	91	3	611	40	9	15	34	1.80
18150781--18152779	498	4.0	499	93	1	3379	35	10	15	37	1.83
18152280--18153092	314	2.6	314	93	0	1407	34	11	15	38	1.84
18152904--18153278	186	2.0	186	94	1	653	40	10	15	33	1.81
18151780--18153457	813	2.1	813	93	0	2838	34	11	16	38	1.84
18155052--18155080	6	4.8	6	100	0	58	65	17	0	17	1.27
18157184--18157230	23	2.0	23	100	0	94	48	8	4	38	1.53
18164799--18164823	7	3.6	7	100	0	50	24	0	28	48	1.52
18166022--18166503	117	4.1	117	87	5	673	36	12	7	42	1.72
18166024--18166501	59	8.1	57	79	9	424	36	12	7	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18166526--18166591	5	12.8	5	80	17	50	81	1	1	15	0.83
18166536--18166594	6	9.8	6	79	20	70	81	1	1	15	0.86
18166526--18166592	20	3.2	21	71	26	61	82	1	1	14	0.82
18166531--18166592	30	2.1	29	85	14	83	82	1	1	14	0.83
18166526--18166594	35	2.0	34	88	11	104	81	1	1	15	0.84
18167018--18167137	3	36.7	3	72	20	57	63	1	5	30	1.25
18166986--18167053	20	3.3	20	82	13	70	63	1	4	30	1.23
18167009--18167137	26	4.9	26	72	16	104	62	1	5	30	1.26
18173975--18174022	25	1.9	25	82	0	60	45	12	4	37	1.61
18174176--18174226	26	2.0	26	84	7	68	31	21	1	45	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126