Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  10  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2342583--2342639
24
2.4
23
88
2
87
33
1
0
64
1.04
2342862--2342911
22
2.3
22
79
10
57
54
0
0
46
1.00
2348316--2348364
24
2.0
24
96
0
89
48
6
16
28
1.69
2351481--2351583
29
3.6
29
76
2
93
53
15
10
20
1.71
2352991--2353028
3
12.7
3
100
0
76
68
31
0
0
0.90
2353397--2353455
26
2.1
29
81
12
70
40
0
5
54
1.23
2354007--2354046
3
13.3
3
89
10
64
70
0
0
30
0.88
2362113--2362154
14
2.9
15
79
10
52
59
0
0
40
0.97
2362311--2362342
2
16.0
2
100
0
64
50
0
0
50
1.00
2363218--2363242
2
12.5
2
100
0
50
48
0
0
52
1.00
2363494--2363527
18
1.9
17
88
5
50
55
8
17
17
1.66
2363902--2363943
18
2.3
19
95
4
77
35
0
0
64
0.94
2369486--2369547
32
1.9
32
83
6
81
43
0
0
56
0.99
2369907--2369956
22
2.3
22
79
10
57
54
0
0
46
1.00
2375028--2375099
34
2.1
34
87
2
101
12
23
16
47
1.81
2375707--2375750
19
2.3
19
84
0
52
61
2
2
34
1.21
2378518--2378600
29
3.0
27
82
10
89
51
14
13
20
1.75
2378707--2378734
11
2.5
11
100
0
56
39
0
7
53
1.28
2380033--2380058
3
8.7
3
100
0
52
69
30
0
0
0.89
2380424--2380482
26
2.1
29
81
12
70
40
0
5
54
1.23
2381047--2381071
3
8.3
3
100
0
50
68
0
0
32
0.90
2381226--2381253
12
2.3
12
100
0
56
25
7
21
46
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2390158--2390237
26
2.8
29
75
16
85
42
0
3
53
1.18
2390180--2390477
11
27.5
11
67
23
102
47
0
1
49
1.16
2390211--2390432
22
10.4
21
73
13
143
50
0
2
46
1.13
2390246--2390422
68
2.7
67
79
16
181
51
0
2
45
1.13
2390189--2390434
27
8.0
30
64
23
52
49
0
2
48
1.12
2390419--2390478
20
3.3
19
82
17
74
36
3
0
60
1.14
2390285--2390476
22
8.9
21
70
21
123
45
1
2
51
1.20
2390662--2390700
13
2.9
13
88
3
51
71
5
10
12
1.28
2393934--2393980
24
1.9
25
87
12
71
36
0
0
63
0.94
2394845--2394893
18
2.9
16
77
11
53
34
0
0
65
0.93
2394853--2394895
21
2.0
21
86
8
61
32
0
0
67
0.91
2394883--2394916
16
2.1
17
94
5
61
50
0
0
50
1.00
2394885--2394926
16
2.7
15
82
17
50
50
2
0
47
1.14
2408868--2408894
2
13.5
2
100
0
54
51
0
0
48
1.00
2411054--2411170
43
2.7
44
81
1
110
38
4
5
51
1.46
2411073--2411202
22
6.0
22
72
5
84
38
6
6
48
1.55
2411237--2411294
22
2.6
22
78
5
64
32
6
10
50
1.63
2411324--2411419
45
2.1
44
82
3
111
38
9
7
44
1.64
2411324--2411419
22
4.3
22
73
4
84
38
9
7
44
1.64
2411662--2411788
66
1.9
66
80
3
148
42
8
7
41
1.63
2411729--2411841
22
5.1
21
76
8
95
37
4
9
48
1.56
2411704--2411846
44
3.2
44
82
3
146
39
6
9
44
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2411845--2411984
22
6.4
22
76
3
102
40
7
4
47
1.50
2411926--2411986
11
5.5
11
78
5
61
40
4
1
52
1.33
2411830--2411988
44
3.6
44
68
15
105
41
6
3
47
1.48
2412063--2412110
22
2.3
20
86
10
62
31
0
10
58
1.32
2412155--2412462
22
14.1
22
72
11
188
35
8
6
50
1.58
2412203--2412242
19
2.1
19
85
0
53
32
2
5
60
1.32
2412832--2412907
11
7.0
11
71
3
55
35
3
2
57
1.31
2412824--2412908
22
3.9
22
85
1
109
34
5
2
57
1.36
2419130--2419159
14
2.1
14
93
0
51
40
10
0
50
1.36
2431750--2431779
8
3.8
8
95
0
51
43
0
6
50
1.28
2433476--2433521
21
2.1
21
88
8
65
28
4
4
63
1.33
2433810--2433867
21
2.8
19
80
15
55
10
6
5
77
1.11
2433818--2433866
15
3.2
14
83
13
53
8
4
6
81
0.97
2433822--2433881
21
3.4
17
75
18
59
8
6
5
80
1.03
2437636--2437681
25
1.9
23
82
8
56
69
6
0
23
1.11
2437652--2437696
23
2.0
23
81
0
54
68
6
2
22
1.24
2437790--2437862
33
2.2
33
75
4
76
53
5
1
39
1.33
2440353--2440382
16
1.9
15
93
6
51
16
0
20
63
1.31
2441393--2441445
16
3.2
16
77
15
54
47
3
0
49
1.19
2448058--2448090
2
16.5
2
100
0
66
48
0
0
51
1.00
2450643--2450675
17
1.9
17
93
0
57
18
0
9
72
1.10
2450644--2450684
17
2.4
17
87
0
55
17
4
7
70
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2451009--2451046
15
2.5
15
83
8
51
71
5
0
23
1.07
2451227--2451295
29
2.4
28
79
15
70
40
0
0
59
0.97
2451967--2452008
16
2.6
17
88
11
70
47
0
0
52
1.00
2451968--2452010
17
2.7
16
80
20
54
48
0
0
51
1.00
2451969--2452022
16
3.4
15
79
18
56
50
0
0
50
1.00
2463942--2463967
2
13.0
2
100
0
52
50
0
0
50
1.00
2465341--2465374
2
17.0
2
100
0
68
50
0
0
50
1.00
2466417--2466464
2
24.0
2
86
0
69
43
0
6
50
1.27
2471544--2471612
34
2.1
32
83
5
84
34
4
10
50
1.56
2471616--2471690
34
2.2
35
85
2
98
45
8
6
40
1.60
2474002--2474043
16
2.6
17
85
11
61
52
2
0
45
1.13
2474539--2474585
17
2.8
17
83
0
67
74
6
0
19
1.03
2482918--2482952
13
2.6
13
86
4
52
51
0
0
48
1.00
2482930--2482981
18
2.9
18
81
13
54
53
0
1
44
1.11
2483011--2483068
22
2.7
22
86
7
75
48
0
0
51
1.00
2483062--2483159
23
4.5
23
76
8
89
41
1
3
54
1.23
2483107--2483173
23
3.1
20
77
14
55
43
0
2
53
1.16
2483024--2483200
82
2.2
80
78
13
175
45
1
3
50
1.26
2483348--2483379
14
2.3
14
94
0
55
46
0
0
53
1.00
2485806--2485865
25
2.4
25
81
10
70
28
25
8
38
1.84
2488494--2488553
21
3.0
20
76
13
70
36
5
0
58
1.20
2488462--2488526
24
2.7
24
74
9
69
36
6
0
56
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2488478--2488568
18
5.2
18
75
13
75
38
3
0
58
1.15
2491097--2491208
56
2.0
56
98
0
215
27
18
25
28
1.98
2501866--2501905
2
20.0
2
100
0
80
50
0
0
50
1.00
2502947--2502979
2
16.5
2
100
0
66
51
0
0
48
1.00
2508384--2508426
22
2.0
22
90
4
70
48
4
9
37
1.56
2510217--2510615
205
1.9
205
87
1
575
40
14
5
39
1.70
2511233--2511279
17
2.8
17
87
3
69
76
6
0
17
0.98
2515999--2516039
19
2.2
19
86
0
55
36
2
0
60
1.10
2516039--2516098
21
3.0
20
76
13
70
36
5
0
58
1.20
2516017--2516113
18
5.4
18
74
12
76
38
3
0
58
1.14
2521502--2521527
2
13.0
2
100
0
52
50
0
0
50
1.00
2538455--2538487
3
11.0
3
100
0
66
33
0
0
66
0.92
2540758--2540831
3
24.7
3
86
10
107
64
0
2
32
1.07
2540758--2540833
29
2.7
28
84
11
102
64
0
3
31
1.12
2542338--2542375
19
2.0
19
100
0
76
52
21
0
26
1.47
2545351--2545390
18
2.3
18
87
8
57
75
0
2
22
0.93
2545351--2545395
18
2.6
16
80
16
54
75
0
2
22
0.91
2545445--2545481
16
2.3
16
95
0
65
75
2
0
21
0.92
2546826--2547118
144
2.0
144
99
0
577
34
11
17
36
1.86
2552527--2552559
12
2.8
12
95
0
57
21
30
9
39
1.84
2552581--2552613
16
2.1
16
94
0
57
24
15
30
30
1.95
2557775--2557818
23
2.0
23
82
8
56
31
0
11
56
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2559585--2559662
36
2.2
35
83
2
93
52
6
2
38
1.41
2559970--2560148
60
3.0
62
83
8
162
56
20
2
20
1.55
2560008--2560148
60
2.4
60
89
3
205
55
20
3
20
1.58
2565234--2565280
17
2.9
16
79
17
53
36
2
2
59
1.21
2570383--2570418
18
2.0
18
100
0
72
22
33
11
33
1.89
2575276--2575318
23
1.9
23
90
4
70
58
0
0
41
0.98
2575276--2575325
23
2.2
22
85
3
64
54
0
2
44
1.11
2576297--2576330
13
2.8
12
82
8
50
0
23
2
73
0.97
2583388--2583425
17
2.2
17
86
9
51
57
2
0
39
1.12
2585903--2585960
13
5.1
12
78
16
52
0
17
3
79
0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126