genome.fa.s667.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  90  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17692783--17692850	14	4.7	15	76	18	56	45	0	0	54	0.99
17692820--17692872	21	2.6	21	88	11	83	47	0	0	52	1.00
17692820--17692871	22	2.5	22	93	6	90	48	0	0	51	1.00
17693496--17693554	24	2.5	23	81	10	66	52	3	3	40	1.35
17693562--17693755	66	2.9	66	83	11	229	26	9	5	58	1.52
17694983--17695029	17	2.9	17	81	9	55	57	2	0	40	1.11
17695888--17695922	17	2.1	17	94	0	61	22	17	2	57	1.53
17696190--17696296	2	53.5	2	85	3	81	51	9	0	38	1.41
17696296--17696332	2	19.5	2	83	10	51	51	45	0	2	1.15
17697550--17697697	54	2.7	53	84	6	181	31	12	10	45	1.76
17697709--17697748	14	2.7	15	84	11	55	40	0	7	52	1.30
17697716--17697747	14	2.2	15	94	5	57	43	0	6	50	1.27
17697660--17697801	73	1.9	73	90	8	227	33	10	5	50	1.61
17697715--17698095	119	3.2	117	85	9	497	36	12	5	46	1.64
17697715--17698095	59	6.4	58	82	7	464	36	12	5	46	1.64
17698166--17698200	15	2.3	15	90	9	54	71	0	0	28	0.86
17698159--17698203	12	4.1	11	83	16	58	71	0	0	28	0.87
17699158--17699187	12	2.6	11	94	5	51	6	3	0	90	0.56
17699203--17699569	44	8.5	44	80	7	308	43	18	15	22	1.87
17699203--17699472	127	2.1	128	84	8	366	44	18	14	22	1.87
17699203--17699507	127	2.4	127	83	6	328	45	18	14	22	1.85
17699481--17699592	43	2.6	42	90	5	181	46	14	17	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17700604--17700665	8	7.6	8	73	22	58	8	12	0	79	0.94
17700600--17700664	15	4.6	15	72	14	57	7	15	0	76	0.99
17711988--17712037	20	2.7	17	82	17	64	48	0	0	52	1.00
17711991--17712034	19	2.2	20	96	4	81	50	0	0	50	1.00
17713396--17713433	8	4.9	8	84	15	53	39	0	0	60	0.97
17713398--17713424	14	1.9	14	100	0	54	37	0	0	62	0.95
17714076--17714143	30	2.3	30	82	2	84	55	1	0	42	1.08
17714139--17714163	12	2.1	12	100	0	50	68	0	0	32	0.90
17716921--17717083	81	2.1	79	80	5	177	23	9	5	61	1.47
17717906--17718073	84	2.0	84	86	2	232	42	11	9	35	1.74
17724534--17724568	17	2.1	17	100	0	70	60	0	17	22	1.37
17726444--17726504	29	2.1	30	96	3	115	62	13	3	21	1.45
17726667--17726850	67	2.8	65	79	11	187	56	8	8	26	1.57
17726677--17726873	66	3.0	65	81	11	188	57	7	10	24	1.57
17729705--17729734	11	2.7	11	100	0	60	56	33	0	10	1.32
17729705--17729759	11	4.9	11	80	4	56	50	27	0	21	1.49
17729065--17732401	930	3.6	921	83	5	3800	34	22	9	33	1.86
17734628--17734668	20	2.0	21	85	4	57	26	9	7	56	1.58
17739414--17739467	2	27.5	2	81	3	65	46	3	1	48	1.30
17742406--17742439	2	17.5	2	93	6	61	50	0	0	50	1.00
17746621--17746652	11	2.9	11	90	0	55	15	0	31	53	1.43
17745825--17749194	944	3.6	938	85	2	4333	32	9	23	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17748501--17748568	11	6.2	11	75	11	68	22	0	27	50	1.49
17751398--17751596	66	3.0	66	81	6	208	25	11	7	56	1.60
17751413--17751596	67	2.8	68	81	8	177	26	9	8	55	1.59
17751758--17751818	30	2.1	30	96	3	115	21	3	13	62	1.45
17752841--17752883	17	2.6	17	82	7	54	55	2	0	41	1.12
17756257--17756306	19	2.7	18	85	14	75	52	0	0	48	1.00
17756260--17756303	20	2.2	20	96	4	81	50	0	0	50	1.00
17759194--17759452	44	6.0	44	77	8	230	43	18	13	24	1.87
17759197--17759538	44	8.1	40	74	12	210	41	19	14	25	1.88
17759433--17759538	41	2.6	41	82	8	144	41	17	13	27	1.87
17759976--17760241	21	12.3	21	72	18	158	35	16	9	38	1.81
17760062--17760237	46	3.9	46	88	2	243	35	17	9	38	1.81
17760107--17760243	25	5.8	25	76	13	146	37	13	10	37	1.81
17760225--17760295	34	2.0	37	89	8	112	40	15	8	35	1.78
17761510--17761554	11	3.8	13	82	11	53	4	15	0	80	0.87
17761498--17761585	22	4.0	21	85	12	106	5	15	0	78	0.93
17761510--17761573	31	2.0	32	85	8	87	6	15	0	78	0.95
17761525--17761606	22	3.5	22	87	11	110	7	18	0	74	1.04
17761525--17761585	11	5.5	11	81	11	79	6	14	0	78	0.94
17761499--17761610	13	9.2	13	72	18	66	6	18	0	75	1.01
17762208--17762248	18	2.3	18	100	0	82	36	17	9	36	1.82
17766626--17766733	54	2.0	54	87	0	153	30	12	30	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17767070--17767120	22	2.6	18	75	21	57	74	1	3	19	1.07
17768879--17768903	2	12.5	2	100	0	50	48	0	0	52	1.00
17769539--17769709	86	2.0	85	96	1	315	35	13	14	36	1.86
17778810--17778913	52	2.0	52	84	0	136	46	6	19	27	1.75
17779518--17779559	11	3.8	11	87	0	57	21	0	23	54	1.44
17780520--17780621	52	2.0	50	86	7	143	46	9	16	27	1.79
17783279--17783324	24	1.9	24	86	8	67	54	4	0	41	1.20
17783347--17783535	66	2.8	65	82	9	195	24	10	7	57	1.58
17783438--17783563	66	1.9	67	80	4	148	29	5	10	54	1.56
17783708--17783768	30	2.1	30	96	3	115	21	3	13	62	1.45
17787617--17787671	2	28.0	2	92	3	94	49	0	50	0	1.00
17790759--17790810	2	26.5	2	76	3	52	53	0	1	44	1.11
17791583--17791740	80	2.0	79	86	6	221	38	5	10	44	1.63
17792593--17792634	15	2.8	16	78	14	52	16	2	4	76	1.07
17792680--17792853	4	43.2	4	68	14	67	25	4	2	67	1.20
17792722--17792835	20	5.9	20	73	23	75	27	3	1	67	1.17
17792763--17792883	21	6.1	19	75	16	75	20	4	3	71	1.20
17792724--17792834	55	2.0	56	81	8	129	26	3	1	68	1.16
17792762--17792883	20	5.8	20	72	16	88	21	4	3	70	1.21
17792771--17792864	41	2.3	41	80	12	106	22	4	2	71	1.14
17792838--17792883	19	2.4	19	88	3	65	15	6	6	71	1.27
17793809--17793878	27	2.5	27	78	17	72	12	5	1	80	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17793808--17793891	8	9.6	8	75	20	71	14	5	1	78	0.99
17793787--17793860	37	1.9	39	84	10	100	16	4	1	78	0.97
17793899--17794237	59	5.7	60	85	8	430	44	7	13	34	1.72
17798128--17798188	23	2.6	23	75	14	63	77	0	16	6	0.98
17798139--17798190	22	2.3	23	80	9	63	76	0	17	5	0.97
17799482--17799563	43	1.9	42	87	7	121	36	10	17	35	1.85
17799862--17800281	41	10.1	41	86	5	486	23	16	23	36	1.94
17799862--17800281	124	3.4	123	85	5	508	23	16	23	36	1.94
17799862--17800217	165	2.1	165	86	5	486	22	16	23	37	1.94
17800288--17800330	16	2.7	16	89	7	61	88	6	0	4	0.63
17800288--17800330	22	2.0	22	90	9	70	88	6	0	4	0.63
17800480--17800521	16	2.5	16	92	7	66	21	2	2	73	1.06
17800532--17800702	4	42.2	4	71	14	77	27	2	3	66	1.23
17800529--17800702	15	12.9	14	67	20	70	27	2	3	66	1.22
17800673--17800781	42	2.6	40	80	15	116	21	3	2	72	1.13
17800532--17800781	21	11.8	20	67	15	89	25	3	3	67	1.23
17800754--17800796	20	2.2	20	91	0	68	13	9	6	69	1.35
17800765--17800802	20	1.9	20	94	0	67	10	10	7	71	1.32
17801700--17801756	11	5.5	10	83	8	53	12	5	1	80	0.95
17801700--17801775	6	12.5	6	71	18	50	11	7	1	78	1.01
17801700--17801750	17	3.2	17	72	10	54	11	5	1	80	0.97
17801707--17801788	11	7.4	11	73	14	53	13	7	1	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17801868--17802142	60	4.6	58	81	8	311	35	11	9	44	1.72
17801876--17802101	120	1.9	118	95	1	407	36	12	8	42	1.73
17802125--17802572	59	7.6	59	80	11	481	42	7	12	37	1.71
17802125--17802570	176	2.5	174	81	9	528	42	6	12	37	1.70
17802442--17802483	16	2.6	17	77	11	52	45	9	0	45	1.36
17802125--17802570	119	3.8	118	88	5	652	42	6	12	37	1.70
17804955--17804989	2	17.5	2	100	0	70	48	0	0	51	1.00
17808580--17808748	83	2.0	84	89	5	263	37	9	11	41	1.74
17813844--17813872	10	3.0	10	95	5	51	58	0	0	41	0.98
17815227--17815271	20	2.2	20	96	0	81	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126