genome.fa.s667.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  121  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24015646--24015682	18	2.1	18	100	0	74	32	0	21	45	1.52
24018071--24018128	29	2.0	29	100	0	116	24	24	20	31	1.98
24021579--24021654	38	2.0	39	92	7	131	40	25	23	10	1.86
24023075--24023112	16	2.4	16	86	4	51	26	7	0	65	1.19
24023018--24023170	51	3.0	50	80	13	186	31	13	2	52	1.54
24026436--24026500	29	2.3	30	84	10	91	38	0	4	56	1.20
24027609--24027666	29	2.0	29	100	0	116	24	24	20	31	1.98
24031122--24031200	39	2.0	39	100	0	158	43	24	22	10	1.84
24032564--24032715	52	2.9	51	78	12	159	32	16	1	49	1.54
24034327--24034434	51	2.1	51	86	5	148	34	12	2	50	1.54
24037757--24037821	29	2.3	30	84	10	91	38	0	4	56	1.20
24038933--24038990	29	2.0	29	100	0	116	24	24	20	31	1.98
24043849--24044000	52	2.9	51	76	12	150	33	15	1	49	1.53
24045582--24045728	52	2.8	53	83	9	180	30	16	2	50	1.59
24049447--24049519	29	2.4	30	81	6	94	45	0	5	49	1.25
24049459--24049530	28	2.5	29	82	6	85	44	0	4	51	1.20
24055870--24056012	52	2.8	51	80	10	157	33	13	2	50	1.56
24057905--24058008	54	1.9	54	88	3	156	23	4	29	42	1.74
24060916--24061157	120	2.0	120	98	0	466	40	7	7	44	1.60
24062719--24062782	25	2.8	23	86	13	80	32	0	7	59	1.26
24062720--24062782	35	1.9	31	87	12	90	31	0	7	60	1.26
24062754--24062811	25	2.2	26	85	11	75	32	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24062864--24062904	19	2.1	20	90	4	66	68	0	0	31	0.90
24071687--24071711	2	12.5	2	100	0	50	48	0	0	52	1.00
24074002--24074032	2	15.5	2	100	0	62	51	0	0	48	1.00
24079285--24079316	2	16.0	2	100	0	64	50	0	50	0	1.00
24084372--24084408	19	2.0	18	89	5	56	51	0	0	48	1.00
24084710--24085308	156	3.8	156	95	2	1063	38	18	14	29	1.90
24085350--24085376	10	2.7	10	100	0	54	77	7	0	14	0.97
24085394--24085448	5	10.6	5	77	14	58	3	34	41	20	1.69
24085394--24085455	15	4.0	15	76	4	52	4	32	43	19	1.72
24085668--24085712	19	2.4	19	88	0	63	24	22	31	22	1.99
24086160--24086192	11	2.9	12	86	13	52	78	0	0	21	0.75
24086486--24086550	20	3.2	20	91	0	94	20	30	32	16	1.95
24086650--24086674	1	25.0	1	100	0	50	0	0	0	100	0.00
24086697--24087069	42	8.9	41	86	6	525	36	23	16	23	1.94
24086697--24087085	41	9.3	42	86	7	535	36	22	16	23	1.94
24086697--24087085	83	4.7	83	92	3	615	36	22	16	23	1.94
24088108--24088197	26	3.7	24	82	10	103	12	14	0	73	1.10
24088101--24088198	34	2.9	33	88	10	130	12	14	0	73	1.10
24088108--24088198	8	11.2	8	83	15	107	12	14	0	73	1.09
24093087--24093116	15	2.1	14	93	6	51	6	36	6	50	1.55
24098400--24098992	156	3.8	156	93	4	993	37	18	14	29	1.91
24100368--24100966	156	3.8	156	95	2	1072	38	18	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24100972--24101040	12	4.6	15	77	15	56	79	7	2	10	1.02
24101017--24101041	1	25.0	1	100	0	50	100	0	0	0	0.00
24101320--24101357	19	2.0	19	89	0	58	26	21	28	23	1.99
24102130--24102194	20	3.2	20	91	0	94	20	30	32	16	1.95
24103515--24103558	20	2.3	19	92	4	70	31	0	0	68	0.90
24103515--24103560	10	4.7	10	81	5	58	34	0	0	65	0.93
24103953--24104002	14	3.5	14	73	21	50	18	12	10	60	1.59
24107203--24107236	2	17.0	2	100	0	68	50	0	0	50	1.00
24107953--24107978	3	8.7	3	100	0	52	69	0	30	0	0.89
24111087--24111152	30	2.4	26	77	20	71	54	7	3	34	1.44
24111142--24111173	16	2.0	16	93	0	55	65	0	0	34	0.93
24111857--24111933	37	2.1	37	83	9	95	42	1	1	54	1.16
24111877--24111922	23	2.0	24	91	4	76	43	0	2	54	1.12
24111941--24111992	28	1.9	28	84	7	72	36	11	5	46	1.64
24115121--24115166	22	2.0	23	83	4	58	39	0	4	56	1.19
24119058--24119108	14	3.7	14	86	5	59	68	0	0	31	0.90
24119047--24119089	12	3.3	12	81	15	50	69	0	0	30	0.88
24119084--24119109	7	3.7	7	100	0	52	57	0	0	42	0.98
24120694--24120718	2	12.5	2	100	0	50	52	0	0	48	1.00
24120825--24120858	3	11.3	3	93	0	59	70	0	29	0	0.87
24121080--24121152	28	2.6	28	97	0	137	35	35	13	15	1.87
24121916--24121982	31	2.2	31	100	0	134	44	22	14	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24132224--24132255	13	2.5	13	94	0	55	75	3	0	21	0.95
24134150--24134210	28	2.0	30	82	17	74	59	6	0	34	1.24
24138715--24138781	22	3.0	22	75	20	59	53	0	0	46	1.00
24139120--24139160	18	2.2	19	91	4	66	34	0	2	63	1.08
24139179--24139229	10	5.1	10	75	15	52	56	1	0	41	1.10
24152034--24152075	11	3.8	11	87	0	66	23	0	26	50	1.50
24152033--24152075	22	2.0	22	95	0	77	25	0	25	48	1.51
24152100--24152256	52	3.0	52	79	7	185	41	7	23	27	1.81
24152399--24152435	19	1.9	19	100	0	74	37	10	37	13	1.80
24152761--24152827	31	2.2	31	86	0	89	32	23	19	23	1.97
24153272--24153325	27	2.0	27	96	0	99	31	9	7	51	1.61
24153823--24153861	19	2.1	19	85	0	51	51	2	0	46	1.14
24159434--24159479	18	2.6	18	82	0	56	41	17	39	2	1.62
24159539--24159603	21	2.9	24	77	15	75	43	7	47	1	1.41
24159521--24159660	42	3.3	42	75	8	124	44	5	46	3	1.44
24159551--24159660	21	5.2	21	82	0	112	41	7	47	3	1.49
24159521--24159660	63	2.2	63	81	6	158	44	5	46	3	1.44
24159548--24159668	42	2.9	42	78	1	136	41	7	46	4	1.54
24159813--24159856	18	2.4	18	92	0	70	31	20	20	27	1.97
24162279--24162308	2	15.0	2	100	0	60	50	0	0	50	1.00
24166955--24167351	202	2.0	199	83	5	505	32	15	18	33	1.93
24175632--24175680	11	4.2	11	85	12	62	67	2	0	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24175638--24175676	15	2.5	15	88	12	53	69	0	0	30	0.89
24176951--24177010	7	8.1	7	77	15	59	31	1	0	66	1.01
24176951--24177010	15	4.1	14	78	16	59	31	1	0	66	1.01
24176950--24177006	24	2.3	25	76	14	64	33	1	0	64	1.04
24176986--24177014	14	2.0	15	93	6	51	41	0	0	58	0.98
24196137--24196184	25	2.0	24	87	4	69	64	0	0	35	0.94
24196139--24196218	24	3.5	24	74	16	71	62	1	1	35	1.11
24196137--24196193	13	4.5	13	80	2	53	63	1	0	35	1.05
24202460--24202507	21	2.2	22	85	3	62	45	4	10	39	1.58
24202559--24202602	19	2.3	21	77	22	60	61	0	0	38	0.96
24202563--24202597	14	2.4	14	90	4	52	57	0	0	42	0.99
24203145--24203288	59	2.4	59	88	2	209	40	1	4	53	1.31
24203351--24203394	22	1.9	24	86	9	65	43	0	0	56	0.99
24203425--24203467	20	2.2	20	80	19	56	65	2	0	32	1.06
24205839--24205882	2	22.0	2	100	0	88	50	0	0	50	1.00
24208976--24209027	16	3.2	16	91	8	79	53	0	25	21	1.45
24219409--24219506	50	1.9	52	82	12	123	42	2	4	51	1.32
24219880--24220042	22	7.4	22	80	0	155	48	4	4	42	1.42
24219881--24219973	11	8.5	11	74	0	87	51	4	2	41	1.33
24219880--24220051	44	3.9	44	77	0	173	48	4	4	42	1.42
24219896--24220095	88	2.3	88	79	3	215	48	4	4	43	1.40
24221381--24221423	18	2.4	18	96	0	77	34	0	23	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24225277--24225312	19	1.9	18	88	5	54	47	0	0	52	1.00
24225392--24225452	22	2.8	22	75	18	56	49	0	1	49	1.10
24225419--24225462	15	3.0	15	76	6	54	54	0	0	45	0.99
24225601--24225661	18	3.4	18	79	18	65	50	3	0	45	1.17
24225603--24225652	21	2.6	19	75	18	50	56	4	0	40	1.18
24225686--24225738	25	2.1	26	89	3	81	56	0	0	43	0.99
24227915--24227992	27	2.9	27	73	17	72	47	1	1	50	1.17
24227913--24227990	28	2.7	28	71	11	68	46	1	1	51	1.17
24228337--24228377	9	4.8	9	76	11	50	2	2	9	85	0.78
24228327--24228367	18	2.3	18	87	8	57	2	9	7	80	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126