genome.fa.s667.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  28  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6007946--6007986	16	2.5	16	92	4	64	90	0	9	0	0.46
6007943--6007986	10	4.4	10	88	8	63	90	0	9	0	0.44
6008803--6008888	22	3.7	21	73	19	64	61	1	1	36	1.11
6008805--6008867	27	2.2	28	86	10	85	63	1	1	33	1.13
6008834--6008882	20	2.5	19	84	15	64	59	2	0	38	1.09
6008900--6008943	16	2.8	15	80	10	52	0	27	0	72	0.85
6012256--6012293	15	2.5	15	95	0	67	31	7	13	47	1.71
6014865--6014919	28	2.0	28	86	10	78	49	3	1	45	1.30
6018839--6018878	21	1.9	21	89	0	62	37	15	37	10	1.80
6037849--6038213	201	1.8	204	80	8	442	36	12	7	43	1.70
6038345--6038391	24	2.0	24	83	4	60	63	0	2	34	1.06
6040644--6040682	17	2.3	17	95	0	69	10	20	10	58	1.59
6041161--6041198	3	12.7	3	94	0	67	34	28	0	36	1.58
6051533--6051575	22	2.0	22	85	0	59	37	11	13	37	1.82
6056993--6057086	46	2.0	46	91	0	152	26	11	22	39	1.88
6062953--6063035	23	3.7	23	77	4	80	43	1	4	50	1.31
6063580--6063621	19	2.0	21	86	13	61	28	2	19	50	1.60
6063899--6063956	29	2.0	29	86	6	82	43	8	3	44	1.51
6064119--6064158	19	2.1	19	85	0	53	55	0	2	42	1.13
6070368--6070423	26	2.1	27	93	3	96	33	12	21	32	1.91
6075550--6075605	20	2.8	19	75	19	60	64	3	19	12	1.42
6077540--6077591	1	52.0	1	76	0	50	3	7	0	88	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6077540--6077591	11	4.5	11	83	9	68	3	7	0	88	0.62
6077552--6077590	8	4.9	8	87	12	62	0	10	0	89	0.48
6077552--6077591	12	3.3	12	86	13	64	0	10	0	90	0.47
6077620--6077675	22	2.5	22	82	0	76	25	35	19	19	1.95
6078488--6078574	22	3.8	22	70	15	61	18	2	3	75	1.04
6078679--6078743	15	4.1	15	84	5	67	70	1	4	23	1.14
6079130--6079167	20	1.9	20	89	10	60	73	0	2	23	0.95
6080040--6080083	22	2.1	21	87	8	63	15	29	0	54	1.42
6083140--6083171	15	2.2	15	94	5	57	12	0	9	78	0.97
6096916--6096961	23	2.0	23	86	0	65	54	0	30	15	1.41
6097629--6097733	21	5.0	21	76	13	92	28	1	0	68	1.06
6097631--6097727	51	1.9	51	83	8	126	30	2	1	65	1.10
6097630--6097730	7	13.9	7	71	17	64	29	1	0	67	1.08
6098523--6098554	3	10.7	3	100	0	64	31	0	0	68	0.90
6098572--6098623	5	10.8	5	79	8	63	19	1	0	78	0.84
6098658--6099003	60	5.7	58	79	14	335	50	4	9	34	1.56
6098677--6099059	121	3.2	120	79	10	324	49	5	9	35	1.58
6098946--6098988	18	2.2	20	80	8	54	62	2	2	32	1.20
6098975--6099054	25	2.9	30	64	21	73	50	7	8	33	1.62
6100191--6100232	17	2.5	17	88	0	66	23	21	7	47	1.75
6103128--6103203	10	7.9	9	81	12	89	81	0	15	2	0.80
6104957--6105083	44	2.9	44	86	1	173	22	15	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6105276--6105366	3	29.7	3	72	16	62	28	1	1	69	1.03
6105313--6105363	20	2.5	21	84	12	63	31	1	0	66	1.03
6105286--6105369	23	3.7	23	82	9	93	29	1	1	67	1.05
6105277--6105406	54	2.5	51	81	17	142	29	2	2	66	1.16
6105283--6105408	52	2.5	49	82	14	143	29	2	2	65	1.17
6105315--6105386	23	3.0	23	72	20	65	33	2	1	62	1.18
6105283--6105398	48	2.3	50	84	14	143	30	1	2	65	1.16
6106235--6106285	9	5.7	9	100	0	102	23	0	0	76	0.79
6106240--6106317	9	7.9	11	88	8	59	21	1	0	76	0.85
6106235--6106319	27	3.3	24	82	14	91	22	1	0	76	0.85
6106236--6106317	5	17.0	5	69	16	57	21	1	0	76	0.85
6106324--6106837	61	8.4	62	79	11	469	48	7	9	35	1.62
6108193--6108248	17	3.3	17	82	5	69	46	1	0	51	1.11
6112229--6112260	2	16.0	2	100	0	64	50	0	0	50	1.00
6118294--6118356	24	2.9	22	80	17	69	63	0	0	36	0.95
6119223--6119271	1	49.0	1	79	0	53	89	0	8	2	0.55
6119223--6119271	21	2.3	21	92	0	80	89	0	8	2	0.55
6119223--6119271	11	4.5	11	87	5	73	89	0	8	2	0.55
6119453--6119557	44	2.4	44	85	3	131	40	18	16	24	1.90
6119472--6119611	44	3.1	44	76	14	133	43	17	14	24	1.86
6119535--6119877	48	7.0	49	74	10	232	40	17	13	27	1.88
6119574--6119761	49	3.7	52	75	12	174	44	18	12	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6119569--6119713	52	2.8	52	82	5	161	46	18	11	23	1.82
6119536--6119713	52	3.5	52	80	6	152	44	17	12	24	1.83
6119869--6119909	16	2.5	17	84	11	59	31	21	17	29	1.96
6119786--6120006	115	2.0	111	84	3	289	37	20	13	29	1.90
6119886--6120260	49	7.8	48	75	8	298	40	20	12	27	1.88
6131549--6131586	20	2.0	20	85	15	53	10	5	5	78	1.06
6131213--6132001	260	3.0	261	95	1	1391	35	10	17	37	1.83
6131809--6131846	20	2.0	20	85	15	53	10	5	5	78	1.06
6132593--6132626	12	2.8	13	91	8	54	26	0	2	70	1.01
6133172--6133197	10	2.6	10	100	0	52	65	7	0	26	1.20
6134099--6134168	1	70.0	1	73	0	59	87	2	5	4	0.75
6134091--6134157	9	7.4	9	79	14	59	86	2	8	1	0.73
6134092--6134157	34	1.9	35	87	3	98	86	3	9	1	0.74
6139465--6139527	18	3.4	18	70	10	56	9	3	38	49	1.51
6139553--6139702	7	22.3	7	72	13	109	18	1	34	46	1.58
6139558--6139698	26	5.3	27	75	16	91	19	1	34	45	1.59
6139553--6139698	33	4.3	33	78	12	122	19	1	34	45	1.59
6139788--6139821	18	1.9	18	88	5	52	47	14	2	35	1.60
6141686--6141731	20	2.3	20	85	7	58	30	13	15	41	1.85
6141976--6142025	4	12.8	4	87	4	75	4	0	20	76	0.95
6141976--6142025	20	2.5	20	96	3	93	4	0	20	76	0.95
6142077--6142599	41	12.8	41	70	9	124	38	12	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6142432--6142500	22	3.3	22	66	12	63	33	14	21	30	1.93
6142077--6142599	82	6.4	81	71	8	299	38	12	20	29	1.89
6142748--6142853	34	3.1	34	81	0	113	48	17	9	24	1.77
6142776--6142853	17	4.6	17	69	16	63	48	19	10	21	1.78
6145240--6145275	16	2.2	16	90	0	54	44	13	11	30	1.79
6148382--6148406	8	3.1	8	100	0	50	48	24	0	28	1.52
6148393--6148435	21	2.1	20	86	4	59	37	16	0	46	1.47
6150650--6150805	73	2.2	72	83	3	197	43	10	16	30	1.80
6150697--6150810	35	3.1	37	76	13	119	42	11	14	30	1.81
6152301--6152416	25	4.6	25	85	1	142	30	8	6	54	1.57
6153931--6153964	11	3.0	11	87	8	50	85	2	11	0	0.71
6154660--6154731	7	9.4	7	76	16	54	81	0	15	2	0.79
6154660--6154731	16	4.7	15	78	10	65	81	0	15	2	0.79
6154660--6154740	31	2.6	32	74	14	80	80	0	17	2	0.82
6154665--6154740	35	2.2	35	81	11	86	78	0	18	2	0.86
6154661--6154724	20	3.2	20	75	20	62	82	0	14	3	0.78
6154660--6154727	24	2.8	24	82	8	86	82	0	14	2	0.79
6155166--6155275	28	4.1	26	68	18	73	76	0	18	5	0.97
6155180--6155262	14	5.6	14	70	26	55	78	0	16	4	0.92
6155202--6155254	17	3.2	16	79	10	63	79	0	16	3	0.88
6155167--6155270	36	2.9	37	77	9	99	77	0	17	4	0.93
6155177--6155271	10	9.2	10	68	14	59	78	0	16	4	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6156711--6156748	17	2.2	17	86	9	51	31	18	5	44	1.72
6156817--6156886	22	3.3	22	67	23	60	38	20	8	32	1.83
6156751--6157058	41	7.5	40	73	11	196	31	18	10	39	1.84
6156835--6156903	19	3.5	19	70	18	68	36	20	7	36	1.80
6157022--6157081	21	2.8	22	68	12	54	31	18	10	40	1.84
6157090--6157550	51	9.1	51	70	9	221	31	18	15	34	1.93
6157112--6157495	151	2.5	149	77	6	376	32	18	16	33	1.93
6157353--6157583	100	2.3	100	82	5	270	30	18	17	33	1.94
6157761--6157872	12	8.9	12	77	14	93	81	9	1	7	0.95
6157784--6157853	9	7.9	9	75	20	58	78	12	0	8	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126