Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  81  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16418313--16418350
20
1.9
20
100
0
76
13
23
5
57
1.56
16419421--16419462
5
8.8
5
84
10
61
38
0
0
61
0.96
16419421--16419462
19
2.2
19
91
0
66
38
0
0
61
0.96
16425601--16425711
37
3.0
37
100
0
222
35
21
10
32
1.88
16426300--16426366
34
2.0
34
84
0
89
49
8
2
38
1.50
16426760--16426790
16
1.9
16
93
0
53
51
0
0
48
1.00
16426992--16427043
27
1.9
27
88
0
77
50
7
7
34
1.60
16427486--16427603
52
2.3
51
78
12
116
41
0
6
50
1.34
16427734--16427760
11
2.5
11
100
0
54
37
7
0
55
1.28
16428149--16428189
21
2.0
21
95
0
73
12
21
7
58
1.58
16431464--16431502
11
3.5
11
86
6
60
38
0
0
61
0.96
16431463--16431506
23
2.0
23
86
4
63
40
0
0
59
0.98
16433096--16433143
24
2.0
24
91
0
78
39
6
10
43
1.64
16434307--16434337
2
15.5
2
100
0
62
48
0
0
51
1.00
16434562--16434609
24
2.0
24
83
0
60
45
10
4
39
1.58
16441476--16441524
13
3.9
12
83
5
62
16
0
4
79
0.88
16441476--16441524
25
2.0
25
84
8
64
16
0
4
79
0.88
16441850--16441906
10
5.4
10
76
19
62
49
0
3
47
1.18
16441924--16441986
20
3.2
19
74
17
65
58
1
3
36
1.23
16442023--16442068
19
2.4
19
88
0
65
65
0
0
34
0.93
16442021--16442061
20
2.0
21
85
4
57
63
0
0
36
0.95
16443669--16443710
16
2.5
17
81
11
52
33
9
0
57
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16446119--16446174
20
2.8
20
74
15
62
44
0
3
51
1.18
16447085--16447114
15
2.1
15
93
6
53
33
0
0
66
0.92
16449424--16449477
20
2.7
20
78
16
58
74
3
5
16
1.16
16449426--16449470
22
2.1
21
83
4
54
75
4
6
13
1.15
16453635--16453702
6
11.0
6
75
12
57
58
0
0
41
0.98
16454215--16454291
39
2.0
40
92
2
129
46
7
6
38
1.59
16455017--16455063
3
15.7
3
95
0
85
68
2
0
29
1.02
16458008--16458076
30
2.3
31
89
2
104
34
4
2
57
1.33
16458008--16458096
30
2.9
30
83
5
90
37
7
2
52
1.43
16458320--16458352
17
2.1
17
88
11
52
27
0
54
18
1.44
16462099--16462170
28
2.5
28
84
2
81
48
1
0
50
1.09
16462134--16462190
19
3.0
19
73
14
55
57
0
0
42
0.98
16466361--16466419
30
1.9
31
89
3
93
33
3
3
59
1.31
16466366--16466439
31
2.4
30
82
6
87
40
5
1
52
1.33
16466459--16466515
31
2.0
30
83
13
75
52
5
7
35
1.51
16470466--16470526
28
2.2
28
81
0
68
45
1
1
50
1.21
16471844--16471881
3
12.7
3
100
0
76
68
0
0
31
0.90
16475198--16475266
30
2.3
30
82
5
86
42
14
2
40
1.61
16484262--16484295
16
2.1
16
94
0
59
35
11
17
35
1.87
16485280--16485309
1
30.0
1
100
0
60
100
0
0
0
0.00
16486458--16486494
19
1.9
19
94
0
65
32
13
8
45
1.73
16493765--16493797
15
2.2
15
100
0
66
36
30
6
27
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16493861--16493932
27
2.7
27
91
0
108
2
22
6
68
1.27
16496544--16496578
13
2.5
15
90
9
56
71
2
8
17
1.23
16499085--16499115
2
16.0
2
93
6
55
48
0
0
51
1.00
16499590--16499637
22
2.2
22
81
7
53
39
0
0
60
0.97
16500853--16500927
27
2.6
28
75
20
75
46
0
0
53
1.00
16500870--16500950
30
2.7
29
80
18
87
49
0
0
50
1.00
16501132--16501206
23
3.0
24
77
13
73
34
2
2
60
1.25
16504530--16504558
15
2.0
15
93
6
51
0
17
0
82
0.66
16505846--16505916
23
3.1
23
71
16
67
19
1
7
71
1.16
16507711--16507757
24
1.9
25
86
4
69
70
2
10
17
1.26
16508030--16508076
24
2.0
24
83
8
60
4
19
0
76
0.95
16508410--16508445
17
2.1
17
94
0
63
50
19
8
22
1.74
16509212--16509259
24
2.0
24
87
0
69
41
18
8
31
1.80
16516839--16516863
2
12.5
2
100
0
50
52
0
0
48
1.00
16522068--16522097
14
2.1
14
93
0
51
13
20
36
30
1.90
16527426--16527460
17
2.0
17
94
5
61
17
0
5
77
0.96
16528609--16528638
16
1.9
15
93
6
51
66
3
0
30
1.07
16530278--16530319
3
14.0
3
100
0
84
66
0
0
33
0.92
16530742--16530806
31
2.1
31
100
0
130
49
3
9
38
1.51
16532813--16532838
2
13.0
2
100
0
52
50
0
0
50
1.00
16532974--16533012
2
19.5
2
94
0
69
46
0
0
53
1.00
16533610--16533643
2
17.5
2
87
6
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16535241--16535371
65
2.0
65
93
0
226
45
14
3
35
1.63
16535422--16535452
15
2.1
15
94
5
55
48
0
0
51
1.00
16537086--16537156
37
1.9
36
83
8
90
19
2
5
71
1.18
16538417--16538455
20
2.0
20
84
0
51
0
12
2
84
0.72
16540663--16540718
3
18.7
3
100
0
112
32
0
0
67
0.91
16541979--16542010
17
1.9
17
93
6
57
84
3
0
12
0.74
16547407--16547448
16
2.7
16
85
14
61
11
7
7
73
1.23
16549130--16549182
22
2.4
22
83
0
70
35
0
3
60
1.15
16549147--16549187
8
5.2
8
80
14
50
36
0
0
63
0.95
16549148--16549195
22
2.2
22
81
7
53
41
0
0
58
0.98
16549804--16549871
27
2.5
27
79
11
77
48
0
0
51
1.00
16550823--16550873
14
3.6
14
76
7
50
66
3
0
29
1.09
16554890--16554920
11
2.9
11
95
4
55
19
25
6
48
1.72
16562139--16562209
8
9.7
7
75
22
58
77
0
12
9
0.99
16562136--16562218
17
4.9
17
78
14
91
79
0
12
8
0.93
16562149--16562226
8
9.6
8
79
8
77
76
0
14
8
1.00
16563237--16563531
41
7.1
41
87
6
395
23
16
21
38
1.93
16563832--16563895
31
2.2
26
79
17
65
32
0
4
62
1.16
16563865--16563899
3
11.7
3
88
11
54
31
0
0
68
0.90
16563857--16563899
14
3.1
14
84
15
63
32
0
0
67
0.91
16564744--16564814
17
4.2
16
77
13
63
14
1
5
78
0.99
16564765--16564817
4
13.5
4
76
11
56
18
1
3
75
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16564782--16564833
22
2.3
23
78
15
56
26
1
3
67
1.18
16564869--16564909
21
1.9
22
90
5
66
12
7
4
75
1.16
16564924--16565559
60
10.7
59
83
7
702
45
8
12
33
1.73
16564923--16565559
59
10.7
58
84
7
694
45
9
12
33
1.73
16566257--16566288
16
2.0
16
100
0
64
43
6
12
37
1.68
16569203--16569357
52
3.0
51
85
5
197
26
23
8
41
1.83
16569640--16569717
25
3.1
25
78
10
88
17
35
8
37
1.82
16570330--16570376
22
2.1
22
84
0
58
2
25
0
72
0.96
16570350--16570390
13
3.1
14
86
10
59
0
17
0
82
0.66
16587524--16587563
21
1.9
21
89
0
62
55
0
0
45
0.99
16589036--16589079
22
2.0
22
86
0
61
31
9
9
50
1.65
16589489--16589527
19
2.1
18
85
4
51
48
0
0
51
1.00
16590893--16590941
20
2.5
20
80
6
55
59
0
2
38
1.09
16591606--16591665
20
3.1
20
68
18
63
50
3
1
45
1.28
16594842--16595002
58
2.7
59
80
12
172
46
5
8
39
1.58
16594842--16595002
60
2.7
58
77
9
168
46
5
8
39
1.58
16599951--16600162
46
4.5
46
81
6
230
41
8
11
37
1.72
16600092--16600136
13
3.5
13
78
6
56
46
8
11
33
1.70
16599956--16600279
117
2.8
114
83
11
383
41
8
12
36
1.75
16599959--16600276
46
6.8
47
80
10
173
42
9
12
36
1.74
16600763--16600842
41
2.0
41
82
0
97
17
16
21
45
1.86
16602640--16602798
59
2.7
59
84
5
225
44
5
10
40
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16606924--16607242
10
32.9
10
66
10
92
53
9
0
36
1.39
16606926--16607248
30
11.2
29
68
12
132
54
9
0
35
1.39
16606924--16607248
20
16.8
19
68
15
159
54
9
0
35
1.39
16606987--16607248
10
26.9
10
67
13
109
54
9
0
34
1.39
16607285--16607326
18
2.4
17
84
4
57
73
0
2
23
0.94
16607615--16607658
8
5.0
8
82
17
52
27
0
2
70
0.99
16607617--16607658
10
4.6
9
80
14
50
23
0
2
73
0.94
16607907--16607970
8
8.1
8
77
20
64
34
0
1
64
1.03
16607908--16607943
18
2.1
18
94
5
65
44
0
0
55
0.99
16607928--16607972
21
2.1
21
91
0
72
26
0
2
71
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126