genome.fa.s667.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  59  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11967755--11967814	10	5.9	10	77	14	61	83	0	13	3	0.77
11967744--11967814	29	2.5	27	78	19	81	81	0	14	4	0.83
11968794--11968871	41	1.9	41	87	10	115	30	14	16	38	1.88
11968856--11969135	43	6.5	43	82	7	275	22	15	21	40	1.90
11968878--11969127	84	2.9	84	84	5	279	23	15	20	41	1.90
11969366--11969525	10	15.7	10	69	17	55	35	5	1	58	1.31
11969372--11969489	24	5.1	23	73	15	77	35	5	1	56	1.34
11969390--11969491	24	4.2	24	72	13	84	36	6	1	54	1.38
11969365--11969490	48	2.7	47	76	11	116	35	6	1	56	1.34
11970217--11970261	9	4.3	10	86	13	56	28	0	2	68	1.01
11970229--11970266	19	2.0	19	85	10	51	31	0	5	63	1.17
11970308--11970486	60	3.1	58	79	10	179	45	6	11	36	1.66
11973003--11973127	63	2.0	63	98	0	241	26	21	12	39	1.89
11980777--11980860	34	2.5	34	76	7	89	35	14	16	33	1.89
11981535--11981591	21	2.8	20	86	2	69	14	19	12	54	1.71
11984800--11984894	45	2.1	45	82	3	111	47	14	9	28	1.76
11985000--11985061	4	15.2	4	80	9	72	72	6	0	20	1.06
11990896--11990962	29	2.2	30	78	5	82	43	1	5	49	1.36
11992632--11992687	27	2.1	26	81	15	62	50	3	3	42	1.37
11993834--11994003	86	2.0	86	91	0	277	33	8	18	39	1.81
11995502--11995540	20	2.0	20	90	10	62	28	5	2	64	1.28
11996773--11996942	86	2.0	86	90	0	268	34	8	18	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002503--12002565	28	2.1	30	82	8	76	39	0	12	47	1.42
12013347--12013532	26	7.2	26	81	4	207	19	25	25	29	1.98
12013345--12013532	52	3.6	51	84	2	234	19	26	25	29	1.98
12013344--12013571	52	4.4	52	79	6	205	18	25	25	29	1.98
12013388--12013580	78	2.5	77	76	4	190	17	26	26	29	1.98
12013662--12013697	3	12.3	3	94	5	65	30	0	0	69	0.89
12020432--12020471	5	7.8	5	84	15	55	82	0	2	15	0.77
12020432--12020472	16	2.7	14	85	14	55	82	0	2	14	0.76
12021059--12021105	23	2.0	25	87	8	71	48	17	2	31	1.58
12021363--12021395	5	6.8	5	96	3	59	84	0	0	15	0.61
12021390--12021555	20	8.2	20	74	16	105	61	0	6	31	1.26
12021390--12021543	40	3.8	41	75	17	124	60	0	7	31	1.28
12021435--12021550	3	34.7	3	70	22	56	62	0	6	31	1.25
12021404--12021554	7	21.4	7	72	22	52	60	0	7	31	1.28
12021383--12021556	53	3.3	55	76	12	184	62	0	6	30	1.24
12021794--12022048	46	5.7	46	78	11	244	39	21	14	24	1.91
12021794--12022059	89	3.0	88	81	9	267	38	21	14	24	1.91
12023055--12023115	15	3.9	15	76	8	59	6	14	3	75	1.13
12032288--12032684	197	2.0	197	100	0	794	30	18	17	33	1.94
12033718--12033932	59	3.7	59	85	4	276	37	13	6	42	1.71
12033949--12034020	6	13.2	5	83	11	74	79	0	4	16	0.89
12033949--12034020	12	6.5	11	83	13	87	79	0	4	16	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12033949--12034007	6	10.3	6	87	5	79	79	0	3	16	0.86
12034547--12034610	30	2.1	31	85	2	85	48	25	10	15	1.77
12034906--12034934	5	5.8	5	100	0	58	82	0	0	17	0.66
12034921--12035153	16	15.2	14	67	23	64	67	2	3	26	1.19
12034925--12034983	22	3.0	20	78	14	52	62	0	5	32	1.17
12034974--12035085	3	33.7	3	72	21	66	62	0	5	31	1.24
12034974--12035084	31	3.7	29	74	17	93	62	0	5	31	1.24
12034922--12035088	56	3.1	54	76	11	130	62	0	5	31	1.22
12034927--12035085	33	4.6	34	71	17	109	62	0	5	31	1.23
12034964--12035147	7	26.6	7	73	17	72	67	2	3	26	1.21
12035063--12035147	15	5.6	15	75	22	63	75	4	1	18	1.04
12035071--12035162	23	4.0	23	73	20	75	77	5	0	17	0.96
12035125--12035158	5	7.2	5	87	12	54	82	0	0	17	0.67
12035090--12035163	9	7.7	9	72	14	58	78	5	0	16	0.93
12040114--12040786	238	2.8	236	80	4	699	19	20	14	45	1.85
12040114--12040818	119	5.9	118	79	2	615	19	20	14	45	1.85
12040983--12041033	26	2.0	26	88	0	75	21	23	25	29	1.99
12041018--12041051	16	2.1	16	88	0	50	20	32	23	23	1.98
12041103--12041134	3	10.7	3	100	0	64	31	0	0	68	0.90
12041176--12041213	14	2.7	14	91	0	58	28	2	0	68	1.03
12041179--12041213	17	2.1	17	88	0	52	28	2	0	68	1.04
12041218--12041257	13	3.0	13	92	3	62	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12041207--12041265	23	2.5	24	83	8	75	6	23	0	69	1.12
12042061--12042121	19	3.2	19	76	9	61	16	8	1	73	1.14
12042067--12042121	20	2.8	20	75	13	60	18	7	1	72	1.16
12058939--12059110	88	2.0	88	88	0	254	24	22	30	22	1.99
12059299--12059493	63	3.0	62	75	7	210	26	13	21	38	1.90
12059655--12059817	85	1.9	85	83	7	215	28	12	21	37	1.90
12060503--12060545	24	1.9	22	86	13	61	23	25	16	34	1.95
12061879--12062467	298	2.0	298	92	0	973	38	10	14	37	1.79
12062699--12062732	15	2.5	13	86	13	50	41	2	8	47	1.50
12063371--12063420	22	2.3	23	79	10	59	44	4	12	40	1.60
12065807--12065854	12	3.9	13	81	10	57	72	8	0	18	1.08
12065806--12065866	22	2.7	23	78	17	74	75	6	0	18	1.01
12065806--12065868	21	2.9	21	80	20	67	74	6	0	19	1.02
12065841--12065873	16	2.0	17	88	5	50	75	0	3	21	0.93
12066761--12066829	3	21.3	3	88	8	75	69	1	1	27	1.05
12066723--12066809	35	2.4	38	83	14	112	72	3	2	21	1.11
12066723--12066821	35	2.8	36	80	17	109	71	3	2	23	1.10
12067060--12067139	41	1.9	42	84	2	108	42	18	15	23	1.88
12067171--12067209	16	2.4	17	86	4	53	38	10	17	33	1.84
12067385--12067425	21	2.0	21	90	9	66	39	14	9	36	1.79
12068547--12068636	27	3.4	27	80	9	96	12	12	0	75	1.05
12068562--12068638	26	2.9	27	84	5	113	11	9	0	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12068561--12068592	11	3.0	11	95	4	57	9	6	0	84	0.78
12073173--12073239	11	5.8	11	80	13	64	74	8	0	16	1.05
12073176--12073215	12	3.3	12	86	10	55	72	12	0	15	1.12
12073194--12073241	23	2.2	21	85	10	62	75	6	0	18	1.01
12073698--12073765	31	2.2	31	81	0	82	52	20	8	17	1.71
12074131--12074230	9	10.8	9	69	24	50	74	3	5	18	1.13
12074131--12074168	9	4.1	9	87	12	51	78	0	7	13	0.94
12074131--12074168	10	4.0	10	86	10	53	78	0	7	13	0.94
12074131--12074168	19	2.1	18	90	5	58	78	0	7	13	0.94
12074132--12074224	22	4.5	19	67	18	53	74	3	5	17	1.14
12077384--12077480	5	18.8	5	73	12	63	38	2	6	53	1.38
12077384--12077429	21	2.2	21	88	0	65	36	2	6	54	1.39
12077828--12077871	19	2.2	20	84	11	56	22	2	20	54	1.56
12077929--12077971	20	2.2	20	83	8	52	41	6	9	41	1.64
12078289--12078313	13	1.9	13	100	0	50	16	0	4	80	0.87
12078351--12078397	16	3.1	16	75	12	62	25	2	10	61	1.39
12091278--12091559	153	1.8	153	90	1	458	42	7	7	43	1.59
12094053--12094100	22	2.2	22	88	7	71	47	8	4	39	1.53
12094063--12094153	22	4.1	22	78	13	71	51	4	5	38	1.45
12094172--12094208	14	2.7	14	80	19	51	62	5	0	32	1.18
12094172--12094219	22	2.2	22	88	7	71	62	6	0	31	1.20
12094302--12094362	22	2.8	22	85	7	79	52	1	8	37	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12094307--12094362	11	5.1	11	78	8	69	51	1	8	37	1.44
12096819--12096866	21	2.2	21	85	3	60	47	12	8	31	1.71
12096830--12096875	21	2.2	20	88	7	74	45	10	10	32	1.74
12104325--12104371	22	2.1	21	81	14	51	55	0	10	34	1.35
12110235--12110459	112	2.0	111	88	5	330	41	21	12	25	1.87
12116627--12116694	29	2.3	30	82	5	75	38	1	7	52	1.38
12138214--12138286	26	2.8	26	77	10	60	39	9	8	42	1.67
12138670--12138702	7	4.7	7	100	0	66	0	12	0	87	0.53
12139519--12139544	13	2.0	13	100	0	52	46	15	0	38	1.46
12139535--12139582	24	2.0	24	100	0	96	29	12	8	50	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126