genome.fa.s656.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  10  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2346714--2346894	65	2.8	65	79	5	170	49	8	4	38	1.53
2346735--2346893	43	3.7	44	80	5	146	50	9	3	36	1.53
2346735--2346893	22	7.3	22	82	3	137	50	9	3	36	1.53
2347121--2347197	22	3.5	22	80	7	77	46	6	11	35	1.66
2347259--2347476	22	9.9	22	75	2	132	45	9	7	38	1.64
2347285--2347438	44	3.5	44	79	0	146	44	7	5	42	1.56
2347322--2347476	66	2.3	66	81	4	161	47	9	6	37	1.61
2347760--2347804	24	2.0	22	82	8	54	42	13	11	33	1.79
2349736--2349818	22	3.8	22	75	12	73	40	4	2	51	1.36
2350450--2350529	39	2.1	39	90	0	124	42	18	1	37	1.59
2356684--2356739	11	5.2	11	81	12	71	42	5	1	50	1.35
2359001--2359035	18	1.9	18	88	11	54	42	5	0	51	1.25
2362010--2362276	133	2.0	133	94	4	477	25	16	15	42	1.87
2370481--2370505	10	2.5	10	100	0	50	60	0	12	28	1.32
2371661--2371725	34	1.9	34	84	9	89	35	20	16	27	1.94
2375580--2375618	16	2.5	15	84	8	51	53	0	0	46	1.00
2383941--2383987	22	2.1	22	88	0	67	44	0	12	42	1.42
2384242--2384431	22	8.9	22	71	16	96	51	6	7	34	1.58
2384329--2384438	22	5.2	22	72	16	97	50	8	8	33	1.62
2384468--2384525	22	2.6	21	75	24	57	63	3	5	27	1.31
2384551--2384634	22	3.8	22	77	0	78	41	7	13	38	1.71
2384741--2384825	22	3.9	22	76	6	82	43	11	7	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2385167--2385227	22	2.8	22	84	0	68	47	6	6	39	1.55
2385330--2385385	22	2.6	22	85	2	69	51	5	3	39	1.42
2385539--2385629	22	4.1	22	77	8	69	46	8	10	34	1.70
2385568--2385726	44	3.6	43	72	13	135	47	8	8	34	1.66
2385761--2385808	22	2.2	22	88	0	69	54	2	4	39	1.32
2385856--2385890	18	1.9	18	100	0	70	37	22	11	28	1.89
2386213--2386262	21	2.4	21	79	0	64	54	4	6	36	1.44
2391657--2391693	18	2.1	18	89	0	56	35	5	2	56	1.36
2393711--2393766	29	2.0	27	83	13	69	19	5	23	51	1.67
2395565--2395704	22	6.5	22	71	11	83	49	7	8	35	1.61
2395888--2395943	22	2.5	23	82	8	71	42	3	12	41	1.60
2396052--2396134	22	3.8	21	74	6	76	46	10	8	33	1.69
2396565--2396729	22	7.4	22	70	12	88	47	6	9	36	1.60
2396600--2396712	46	2.5	44	78	16	124	48	7	8	35	1.62
2396811--2396874	22	2.9	22	81	9	60	50	3	10	35	1.54
2396839--2396912	22	3.4	22	78	0	67	41	6	13	37	1.71
2397470--2397527	21	2.7	21	83	2	71	48	13	5	32	1.65
2397467--2397527	22	2.8	22	82	2	79	47	13	4	34	1.64
2399837--2399876	20	2.0	20	85	5	53	47	35	5	12	1.63
2405544--2405591	21	2.3	21	85	7	62	33	6	12	47	1.66
2405830--2405868	7	5.7	7	93	3	62	0	2	10	87	0.65
2406067--2406145	15	4.9	15	76	14	68	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2406105--2406236	20	6.8	20	74	14	89	52	0	0	46	1.05
2406106--2406237	37	3.4	38	78	17	121	52	0	0	46	1.05
2406073--2406237	25	6.7	23	66	19	59	52	0	0	47	1.05
2406367--2406398	14	2.1	16	88	11	50	68	9	0	21	1.17
2406552--2406600	22	2.2	22	82	7	64	36	2	8	53	1.43
2406673--2406793	22	5.5	22	73	3	100	38	7	8	46	1.62
2406589--2406793	44	4.7	43	74	8	146	39	8	7	44	1.63
2406758--2406867	52	2.1	52	81	6	125	40	11	2	45	1.55
2406814--2406909	22	4.4	22	77	0	84	40	12	2	44	1.54
2406851--2407317	22	21.2	22	69	11	159	37	9	5	47	1.59
2406808--2406920	44	2.5	44	84	4	129	39	11	2	46	1.54
2406858--2407359	44	11.4	44	71	12	255	36	9	5	48	1.59
2407053--2407275	90	2.5	87	82	5	250	37	8	6	47	1.59
2407241--2407297	11	5.2	11	70	8	53	35	7	7	50	1.56
2407703--2407782	22	3.7	21	74	11	72	41	3	10	45	1.56
2408007--2408108	22	4.7	22	76	11	93	37	7	6	48	1.59
2408058--2408186	65	2.0	65	81	3	152	37	10	6	45	1.64
2408283--2408371	22	4.1	22	73	5	83	32	10	7	49	1.65
2408375--2408453	22	3.6	22	72	6	70	36	3	5	54	1.41
2408449--2408559	22	5.1	22	76	11	70	39	13	4	42	1.65
2408493--2408559	11	6.3	11	73	11	50	38	11	4	44	1.62
2409120--2409171	26	2.0	25	85	10	70	65	5	0	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2414074--2414124	5	9.8	5	87	8	59	76	0	1	21	0.88
2414046--2414123	38	2.1	37	83	11	97	73	1	3	21	1.07
2414796--2414832	12	3.2	12	88	11	51	70	0	0	29	0.88
2422687--2422794	46	2.3	46	87	3	146	55	7	12	24	1.63
2426542--2426579	20	1.9	20	88	0	58	13	42	0	44	1.43
2432691--2433086	198	2.0	198	98	0	765	25	20	12	41	1.87
2434545--2434573	10	2.9	10	100	0	58	51	0	20	27	1.47
2435245--2435279	17	2.1	17	89	10	54	54	0	0	45	0.99
2436413--2436460	24	2.0	24	91	0	78	50	14	18	16	1.79
2437909--2438236	164	2.0	166	84	6	430	41	20	15	23	1.90
2446207--2446231	2	12.5	2	100	0	50	48	0	0	52	1.00
2447582--2447622	21	2.0	21	90	9	66	53	0	2	43	1.13
2448049--2448624	191	3.0	191	90	0	893	28	17	28	25	1.98
2448823--2449847	368	2.8	365	80	5	1170	28	21	29	20	1.98
2449546--2450178	332	1.9	329	85	2	867	26	22	32	18	1.97
2450484--2450611	65	2.0	65	88	0	193	28	17	14	39	1.88
2452858--2453440	290	2.0	290	91	0	950	35	12	7	44	1.71
2460976--2461027	23	2.1	26	86	10	74	55	0	1	42	1.10
2461476--2461533	30	1.9	30	86	6	82	50	10	6	32	1.63
2464265--2464374	57	1.9	57	94	0	193	18	23	25	32	1.97
2464554--2464596	16	2.8	16	89	3	61	55	0	0	44	0.99
2465553--2465607	26	2.1	27	83	16	71	41	1	1	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2467845--2467886	15	2.6	16	77	11	50	50	2	0	47	1.14
2473475--2473518	22	2.0	22	95	0	79	43	13	11	31	1.80
2478087--2478120	14	2.3	15	90	5	52	29	5	2	61	1.34
2481818--2481859	11	3.8	11	93	0	75	21	0	28	50	1.49
2481817--2481859	22	2.0	22	100	0	86	23	0	27	48	1.51
2482844--2482885	11	3.8	11	87	0	66	23	0	26	50	1.50
2482843--2482885	22	2.0	22	95	0	77	25	0	25	48	1.51
2485487--2485536	22	2.3	21	83	10	64	60	6	8	26	1.48
2485628--2485821	18	11.2	18	68	22	87	52	2	1	43	1.24
2485656--2485789	49	2.7	49	88	2	189	53	3	1	41	1.28
2485662--2485788	67	1.9	67	82	9	161	55	3	1	39	1.28
2485717--2485795	31	2.6	30	84	13	99	55	2	0	41	1.13
2485902--2485961	26	2.3	26	88	2	86	46	6	0	46	1.29
2490558--2490595	13	3.0	13	88	3	60	60	0	0	39	0.97
2490531--2490607	21	3.4	24	75	20	67	61	0	1	37	1.05
2495994--2496046	21	2.5	21	82	11	63	20	5	1	71	1.16
2504051--2504214	81	2.0	82	91	3	269	37	19	13	29	1.90
2506453--2506494	18	2.3	18	91	4	66	28	0	2	69	1.01
2512221--2512337	58	2.0	58	98	0	225	41	13	13	31	1.84
2517235--2517292	23	2.4	24	83	13	75	37	0	3	58	1.15
2517402--2517435	13	2.6	13	85	0	50	47	2	0	50	1.16
2517494--2517518	11	2.3	11	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2518117--2518146	15	2.1	15	93	6	53	50	0	0	50	1.00
2518113--2518161	24	2.0	25	88	4	73	55	0	0	44	0.99
2529530--2529568	16	2.4	17	82	4	53	46	0	0	53	1.00
2529551--2529596	14	3.4	14	80	19	53	45	0	0	54	0.99
2529542--2529596	27	2.0	27	86	6	76	47	0	0	52	1.00
2529893--2529918	5	5.2	5	100	0	52	19	0	0	80	0.71
2547590--2547627	6	6.3	6	100	0	76	15	0	50	34	1.45
2560062--2560086	12	2.1	12	100	0	50	48	0	0	52	1.00
2563214--2563252	17	2.4	16	87	8	53	64	12	0	23	1.28
2563502--2563668	84	2.0	84	93	0	289	28	21	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127