genome.fa.s656.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  6  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1408013--1408046	14	2.5	14	90	4	52	52	8	0	38	1.33
1408844--1408877	6	5.7	6	96	0	50	52	32	5	8	1.56
1411074--1411098	13	1.9	13	100	0	50	32	8	16	44	1.76
1416120--1416156	1	37.0	1	100	0	74	0	0	0	100	0.00
1418895--1418919	13	1.9	13	100	0	50	92	0	8	0	0.40
1421305--1421361	26	2.2	26	87	0	78	19	7	17	56	1.64
1430993--1431027	2	17.5	2	100	0	70	51	0	0	48	1.00
1436195--1436244	22	2.3	22	86	3	66	56	8	6	30	1.52
1436712--1436773	29	2.1	29	85	5	81	45	4	1	48	1.33
1436964--1437042	21	4.0	20	69	14	65	50	2	1	45	1.23
1436977--1437009	17	1.9	17	93	0	57	48	3	0	48	1.17
1436954--1437038	38	2.2	40	82	6	111	49	3	2	44	1.32
1437113--1437179	17	3.9	17	72	16	57	50	1	1	46	1.19
1437158--1437221	26	2.5	26	85	9	87	50	1	0	48	1.10
1437343--1437973	318	2.0	319	99	0	1237	41	8	9	40	1.68
1441888--1441934	23	2.0	23	100	0	94	38	14	21	25	1.92
1445395--1445469	35	2.1	36	92	2	125	34	8	1	56	1.37
1451409--1451439	4	7.8	4	100	0	62	0	25	0	74	0.82
1452398--1452457	26	2.3	26	94	0	102	46	11	30	11	1.76
1456340--1456392	26	2.0	26	85	7	72	62	7	5	24	1.44
1462504--1462541	2	19.5	2	94	5	69	47	0	0	52	1.00
1462506--1462539	17	2.0	17	100	0	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462504--1462544	19	2.2	19	100	0	82	46	0	0	53	1.00
1464489--1464526	17	2.4	16	83	12	51	31	5	0	63	1.17
1464600--1464630	2	15.5	2	93	0	53	51	0	0	48	1.00
1467462--1467497	17	2.1	17	94	0	63	30	11	19	38	1.86
1468277--1468318	3	14.0	3	94	0	75	66	2	0	30	1.04
1470503--1470641	22	6.3	22	82	6	120	38	3	10	48	1.54
1470491--1470588	44	2.2	44	81	0	115	34	6	12	46	1.66
1470508--1470624	44	2.7	44	82	2	146	36	4	9	49	1.55
1471265--1471300	17	2.1	17	94	0	63	30	11	19	38	1.86
1472398--1472427	12	2.5	12	94	0	51	13	3	0	83	0.77
1474296--1474542	22	11.3	22	77	6	153	36	5	9	48	1.59
1474296--1474542	66	3.8	65	69	7	180	36	5	9	48	1.59
1474962--1475021	11	5.5	10	77	15	57	36	1	6	55	1.36
1474893--1475046	22	7.0	22	77	5	118	37	6	8	48	1.60
1474970--1475055	22	3.9	22	81	0	91	39	3	6	50	1.47
1475056--1475426	22	16.9	22	71	8	105	36	10	6	46	1.63
1475056--1475426	44	8.4	44	66	9	139	36	10	6	46	1.63
1475438--1475496	22	2.7	22	83	0	73	33	10	8	47	1.68
1475526--1475623	22	4.3	22	72	10	79	39	9	2	48	1.46
1475533--1475622	48	1.9	46	82	8	110	40	10	2	47	1.49
1475590--1475662	22	3.4	21	77	15	62	34	4	6	54	1.46
1475669--1475727	22	2.7	21	81	5	55	38	10	3	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476024--1476128	22	4.8	22	80	0	111	36	8	6	48	1.60
1476024--1476137	44	2.6	44	81	0	129	35	7	6	50	1.57
1476247--1476456	22	9.6	22	69	14	64	37	8	5	49	1.56
1476247--1476369	44	2.8	42	77	16	124	35	7	4	52	1.51
1477914--1477952	16	2.4	16	87	8	53	64	2	2	30	1.21
1478745--1479021	150	1.8	153	89	3	436	45	5	8	41	1.57
1479058--1479101	2	21.5	2	86	4	61	50	0	4	45	1.22
1488787--1488823	14	2.5	15	86	8	58	64	0	2	32	1.07
1491500--1491524	5	5.0	5	100	0	50	60	0	0	40	0.97
1493486--1493977	259	1.9	256	80	5	580	30	18	19	32	1.95
1494226--1494253	2	14.0	2	100	0	56	50	0	0	50	1.00
1497523--1497571	13	3.5	13	82	15	53	55	0	4	40	1.19
1497522--1497579	24	2.4	24	82	0	71	58	0	3	37	1.15
1497524--1497602	29	2.7	29	82	5	88	56	1	3	37	1.25
1497523--1497561	16	2.3	18	86	8	55	56	0	2	41	1.13
1499542--1499574	16	2.0	17	94	5	59	39	12	24	24	1.89
1502608--1502696	6	14.3	6	71	15	65	47	2	0	50	1.13
1502651--1502698	19	2.5	19	100	0	96	43	0	0	56	0.99
1502945--1503007	11	5.8	11	76	10	67	47	1	1	49	1.20
1502946--1503008	22	2.9	22	78	2	74	47	1	1	49	1.20
1508479--1508512	3	11.3	3	87	0	50	64	32	0	2	1.08
1513229--1513264	16	2.2	17	90	5	56	0	22	2	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513372--1513411	2	21.0	2	90	10	66	52	0	0	47	1.00
1515742--1515777	12	3.0	12	91	0	54	0	22	33	44	1.53
1515746--1515786	3	13.7	3	94	0	64	0	26	34	39	1.57
1525380--1525438	24	2.5	23	83	10	66	61	1	15	22	1.43
1530023--1530052	2	15.0	2	100	0	60	50	0	0	50	1.00
1530184--1530221	19	2.0	20	84	5	51	34	5	7	52	1.53
1531322--1531365	19	2.2	20	88	4	63	31	2	0	65	1.05
1533808--1533839	13	2.5	13	100	0	64	34	0	0	65	0.93
1541936--1542058	61	2.0	61	95	0	219	25	11	22	40	1.87
1542104--1542338	116	2.0	116	99	0	461	26	23	20	28	1.99
1547495--1547535	21	1.9	21	85	14	57	48	2	0	48	1.14
1548201--1548242	21	2.0	22	90	4	68	21	26	16	35	1.94
1554208--1554260	7	7.6	7	83	12	56	28	0	0	71	0.86
1554199--1554252	12	3.5	16	76	21	53	27	1	0	70	0.98
1554211--1554254	6	7.2	6	84	10	54	22	0	0	77	0.77
1554209--1554332	28	4.1	29	70	19	85	27	3	1	67	1.15
1554274--1554532	4	63.5	4	65	17	54	25	4	2	67	1.22
1554348--1554465	33	3.6	34	77	14	108	26	5	2	66	1.25
1554371--1554465	25	4.1	25	80	15	98	29	4	2	64	1.24
1554376--1554520	21	6.7	21	76	14	109	27	4	2	65	1.25
1554381--1554515	43	3.1	42	79	12	132	28	4	2	64	1.27
1554513--1554544	16	1.9	17	93	6	57	12	0	6	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1555410--1555488	6	13.3	6	76	19	69	16	5	0	78	0.92
1555408--1555488	5	16.2	5	74	14	53	17	4	0	77	0.93
1557682--1557744	29	2.3	27	82	12	76	42	6	0	50	1.27
1561828--1561868	20	2.0	20	90	9	66	51	9	14	24	1.72
1570076--1570487	40	10.4	39	75	3	340	26	12	19	41	1.87
1570076--1570488	79	5.2	79	87	0	574	26	12	19	41	1.87
1570479--1571128	48	13.4	48	81	4	628	30	11	19	37	1.88
1570479--1571147	145	4.6	144	81	4	648	30	11	20	37	1.88
1570479--1571097	193	3.2	191	85	3	787	31	11	19	37	1.88
1571488--1571588	7	13.6	7	71	19	71	71	12	0	14	1.20
1571487--1571590	16	6.3	16	74	14	95	72	12	0	14	1.18
1571487--1571599	26	4.5	25	83	12	135	72	13	0	13	1.17
1572697--1572724	14	2.0	14	100	0	56	64	0	0	35	0.94
1580424--1580453	15	2.1	14	93	6	51	10	6	0	83	0.81
1580654--1580686	16	2.1	16	94	0	57	24	12	15	48	1.78
1581831--1581865	18	1.9	18	88	0	52	14	0	11	74	1.08
1581871--1581897	14	1.9	14	100	0	54	22	0	0	77	0.76
1582254--1582283	11	2.6	12	94	5	53	26	0	0	73	0.84
1583485--1583525	17	2.3	18	87	8	50	63	0	0	36	0.95
1583684--1583954	40	6.8	40	75	7	214	40	16	13	29	1.86
1583694--1583972	120	2.3	120	88	1	398	40	16	14	29	1.87
1590254--1590293	19	2.1	19	86	9	55	25	5	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590396--1590421	3	8.7	3	100	0	52	30	0	0	69	0.89
1592902--1592953	18	2.8	18	75	16	52	50	0	1	48	1.12
1593008--1593076	24	2.9	24	85	6	88	33	0	0	66	0.92
1593037--1593076	15	2.6	15	84	4	53	27	0	0	72	0.85
1595150--1595190	21	1.9	21	85	14	57	48	2	0	48	1.14
1595857--1595898	21	2.0	22	90	4	68	21	26	16	35	1.94
1598440--1598474	12	2.8	13	86	8	54	31	2	0	65	1.07
1599581--1599657	7	10.6	7	71	18	59	15	0	12	71	1.15
1599579--1599658	16	5.3	16	74	17	73	15	0	12	72	1.12
1599581--1599641	24	2.5	24	89	10	88	14	0	11	73	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127