genome.fa.s656.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  73  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14127282--14127331	9	5.8	8	84	15	64	18	2	0	80	0.82
14127296--14127331	5	7.8	5	87	12	51	19	0	0	80	0.71
14127282--14127331	18	2.9	17	91	8	75	18	2	0	80	0.82
14127346--14127624	59	4.7	58	77	12	280	44	6	12	36	1.67
14128763--14128818	21	2.7	21	94	0	94	26	10	21	41	1.86
14129619--14129651	14	2.4	14	94	0	57	84	0	3	12	0.72
14129709--14129748	16	2.4	17	83	8	55	45	0	5	50	1.23
14129843--14129939	32	3.2	32	63	28	84	34	13	10	42	1.78
14129683--14129949	59	4.5	59	86	6	353	35	13	6	44	1.69
14130002--14130120	17	7.1	17	67	18	54	71	2	6	19	1.20
14129973--14130028	28	2.0	29	86	10	80	71	1	10	16	1.22
14130089--14130170	4	20.5	4	73	9	60	64	3	3	28	1.27
14130153--14130218	19	3.2	20	76	23	66	75	4	3	16	1.09
14134491--14134517	2	13.5	2	100	0	54	48	0	51	0	1.00
14136035--14136214	64	2.8	63	76	12	149	34	11	11	43	1.76
14136382--14136665	125	2.3	125	81	7	310	36	13	10	39	1.79
14137550--14137607	21	2.7	21	81	7	64	34	12	1	51	1.49
14139588--14139619	2	16.0	2	100	0	64	50	0	0	50	1.00
14145741--14145795	13	4.3	13	81	11	60	65	1	0	32	1.03
14145740--14145810	20	3.7	20	72	14	60	67	2	0	29	1.05
14147366--14147581	106	2.0	106	96	0	396	51	18	7	22	1.71
14148233--14148513	132	2.1	133	83	3	352	30	14	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14149540--14149569	13	2.4	12	94	5	51	0	13	0	86	0.57
14155559--14155796	119	2.0	121	84	6	315	51	12	0	35	1.45
14158110--14158147	13	2.9	14	80	11	53	78	0	0	21	0.74
14158109--14158148	16	2.4	16	87	8	53	77	0	0	22	0.77
14161352--14161407	16	3.5	15	77	15	51	10	16	3	69	1.30
14165275--14165349	3	25.0	3	100	0	150	66	0	0	33	0.92
14166595--14166642	25	2.0	25	91	4	80	45	2	0	52	1.12
14166720--14166751	16	1.9	17	93	6	57	53	31	3	12	1.54
14170068--14170095	2	14.0	2	100	0	56	50	0	0	50	1.00
14170159--14170190	16	1.9	17	93	6	57	28	0	0	71	0.86
14170202--14170256	23	2.3	24	81	3	67	54	1	1	41	1.21
14171254--14171298	13	3.1	14	81	12	56	48	2	0	48	1.13
14172371--14172414	22	2.0	22	90	0	70	38	4	13	43	1.65
14173117--14173141	13	1.9	13	100	0	50	32	16	8	44	1.76
14177641--14177687	24	2.0	25	87	8	71	27	6	8	57	1.53
14179099--14179965	119	7.3	119	78	4	841	44	14	20	20	1.86
14179099--14179956	357	2.4	358	80	4	996	44	14	19	20	1.86
14184816--14184846	3	10.3	3	100	0	62	67	0	0	32	0.91
14185805--14185884	31	2.5	32	74	8	83	20	0	36	43	1.52
14185830--14185916	18	4.7	18	75	4	84	14	0	39	45	1.45
14189127--14189591	180	2.6	177	81	7	480	34	17	12	35	1.87
14190795--14190843	24	2.1	23	85	11	64	48	8	10	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14190823--14190923	17	6.1	17	69	21	63	53	15	4	25	1.62
14190768--14190928	34	4.5	34	76	9	137	52	14	5	27	1.64
14190950--14191069	47	2.8	42	77	17	120	55	11	4	29	1.55
14190972--14191060	47	1.9	46	88	2	133	55	11	4	29	1.55
14191137--14191198	32	1.9	33	90	3	99	50	9	8	32	1.65
14191137--14191210	16	4.3	16	73	11	58	48	10	9	31	1.70
14191173--14191210	20	2.0	18	90	10	58	47	10	7	34	1.67
14191815--14191853	12	3.2	12	92	7	62	71	7	0	20	1.10
14192194--14192270	40	2.0	40	84	2	102	46	24	9	19	1.79
14192268--14192413	43	3.4	43	84	2	197	40	15	12	31	1.85
14196547--14196579	8	4.1	8	92	0	57	39	9	24	27	1.85
14198896--14198982	24	3.7	24	74	9	88	51	13	5	28	1.64
14198921--14198956	12	3.0	12	95	0	63	50	19	8	22	1.74
14198897--14198991	47	2.0	48	87	2	138	52	13	6	27	1.64
14198943--14199000	18	3.3	18	67	13	57	55	12	5	27	1.58
14198935--14199033	35	2.8	35	85	3	135	51	13	7	28	1.66
14199065--14199155	47	2.0	43	85	10	121	56	10	2	30	1.46
14199091--14199207	25	4.6	25	74	22	93	54	11	1	31	1.47
14203588--14203625	19	2.0	19	94	0	67	26	23	5	44	1.74
14210638--14210670	16	2.0	17	88	5	50	48	9	9	33	1.66
14212575--14212608	2	17.0	2	100	0	68	50	0	0	50	1.00
14212736--14212777	16	2.6	17	77	11	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14212745--14212787	14	2.9	14	83	10	50	60	0	0	39	0.97
14220191--14220227	16	2.3	16	90	0	56	64	0	0	35	0.94
14227423--14227467	17	2.7	17	83	16	67	2	8	4	84	0.84
14227835--14227867	7	4.7	7	96	0	57	12	3	15	69	1.30
14228712--14228771	29	2.1	29	81	12	70	46	0	1	51	1.10
14229588--14229633	18	2.6	17	82	3	56	6	6	4	82	0.94
14229588--14229644	18	3.2	17	76	11	53	10	7	3	78	1.05
14230531--14230578	17	2.8	17	78	15	53	4	6	6	83	0.91
14230575--14230637	12	5.3	12	73	3	56	50	0	1	47	1.10
14235229--14235256	1	28.0	1	100	0	56	0	0	0	100	0.00
14236725--14236784	32	1.9	31	90	10	95	50	8	0	41	1.33
14238726--14238784	21	2.8	21	76	0	64	61	0	5	33	1.18
14239998--14240049	25	2.1	25	92	0	86	53	7	1	36	1.41
14242491--14242525	17	2.1	16	89	5	52	51	2	0	45	1.16
14243545--14243598	25	2.2	25	83	6	65	40	9	3	46	1.54
14243670--14243717	1	48.0	1	78	0	51	6	4	0	89	0.58
14243651--14243717	8	8.2	8	80	12	59	13	2	0	83	0.76
14243659--14243716	28	2.1	28	90	0	89	12	3	0	84	0.74
14243672--14243714	18	2.4	18	88	0	59	6	4	0	88	0.63
14244435--14244476	20	2.1	20	86	0	57	59	2	7	30	1.37
14244567--14244611	22	2.0	22	86	0	63	37	46	2	13	1.55
14246621--14246689	30	2.3	30	82	7	79	47	26	2	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14246762--14246852	29	3.1	29	76	6	85	45	24	5	25	1.74
14251237--14251278	21	2.0	21	85	4	57	83	4	7	4	0.91
14251683--14251715	17	1.9	17	88	11	50	81	6	3	9	0.95
14252987--14253027	18	2.3	18	82	0	55	26	26	12	34	1.92
14253119--14253231	41	2.8	40	84	10	131	35	19	13	31	1.90
14253476--14253677	87	2.3	87	82	3	246	21	17	18	43	1.89
14253580--14253787	110	1.9	110	84	0	281	23	19	17	39	1.92
14253496--14253979	197	2.5	197	83	5	552	22	19	17	40	1.91
14253957--14254013	22	2.6	23	88	8	82	28	17	19	35	1.94
14254483--14254553	34	2.1	34	84	5	90	16	23	12	46	1.82
14254296--14255335	171	6.1	171	81	2	1106	22	19	12	45	1.84
14254296--14255337	342	3.1	339	82	3	1241	22	19	12	45	1.84
14254296--14255335	512	2.0	512	86	2	1435	22	19	12	45	1.84
14255218--14255466	134	1.9	134	87	1	374	22	22	12	42	1.86
14256923--14256953	6	5.2	6	96	0	53	80	0	0	19	0.71
14257225--14257288	14	4.4	14	71	11	56	48	31	3	17	1.62
14257359--14257443	29	3.0	28	76	10	82	45	18	5	29	1.73
14257441--14257495	15	3.7	14	79	9	56	52	34	1	10	1.47
14259065--14259108	17	2.5	18	81	3	54	22	0	4	72	1.02
14259609--14259681	31	2.4	31	82	11	80	47	31	1	19	1.58
14259624--14259695	14	4.8	15	77	17	62	45	31	1	20	1.60
14259671--14259723	21	2.5	20	77	14	54	52	30	1	15	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14266359--14266409	21	2.4	21	83	6	68	78	1	9	9	1.04
14268529--14268581	3	17.7	3	100	0	106	32	0	0	67	0.91
14271380--14271431	16	3.2	16	84	10	54	80	1	9	7	0.97
14273353--14273677	110	3.0	108	79	8	347	22	20	17	39	1.92
14274037--14274136	37	2.7	37	88	0	146	11	24	20	45	1.83
14274358--14274399	17	2.5	17	73	11	50	57	0	4	38	1.20
14274490--14274556	23	3.0	23	80	2	73	35	46	4	13	1.63
14275973--14276119	14	10.2	14	70	13	77	48	28	1	21	1.59
14275967--14276068	43	2.4	43	85	6	127	50	27	1	20	1.59
14276003--14276097	14	6.7	14	75	7	84	52	28	0	18	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127