genome.fa.s656.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  26  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5695138--5695682	77	7.1	76	81	4	463	40	20	12	26	1.89
5695138--5695648	192	2.6	194	86	2	742	40	20	12	26	1.89
5695770--5695898	39	3.3	39	78	6	136	42	16	13	27	1.85
5695773--5695899	41	3.2	40	77	4	132	40	16	13	29	1.86
5700247--5700273	9	3.0	9	100	0	54	44	0	33	22	1.53
5710141--5710176	10	3.8	9	89	10	54	83	0	13	2	0.76
5710115--5710184	19	3.7	20	76	14	76	74	0	18	7	1.04
5711428--5712156	41	17.5	41	89	5	1081	22	17	24	35	1.95
5711428--5712156	83	8.7	82	90	5	1081	22	17	24	35	1.95
5711428--5712156	124	5.8	123	89	6	1081	22	17	24	35	1.95
5712163--5712284	1	122.0	1	76	0	100	86	6	0	5	0.73
5712163--5712278	10	11.3	10	83	11	128	87	6	0	5	0.72
5712163--5712278	43	2.8	42	89	5	173	87	6	0	5	0.72
5712454--5712507	24	2.2	23	81	18	65	25	5	3	64	1.32
5712558--5712583	3	8.7	3	100	0	52	30	0	0	69	0.89
5713003--5713057	26	2.2	25	90	3	83	41	9	18	30	1.81
5713199--5713247	20	2.5	20	86	0	62	22	26	24	26	2.00
5713490--5713531	14	3.1	15	80	19	56	7	42	21	28	1.79
5713490--5713526	13	2.7	14	80	20	51	8	43	24	24	1.81
5713577--5713655	17	4.8	16	72	13	63	8	3	6	81	0.99
5713577--5713603	1	27.0	1	100	0	54	0	0	0	100	0.00
5713641--5713665	12	2.1	12	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5713656--5714114	152	2.9	155	90	3	717	29	14	17	38	1.90
5714486--5714564	28	2.8	28	78	7	70	25	1	24	49	1.58
5718839--5718900	7	8.6	7	77	11	63	74	0	1	24	0.91
5718838--5718903	15	4.5	14	80	16	80	74	0	1	24	0.91
5718837--5718903	23	3.0	21	85	10	82	74	0	1	23	0.90
5720424--5720479	3	18.7	3	100	0	112	32	0	0	67	0.91
5720527--5720572	21	2.2	21	84	7	58	69	4	4	21	1.24
5721768--5721815	20	2.3	20	92	3	78	77	12	0	10	1.00
5721769--5721816	10	4.8	10	78	0	51	75	12	0	12	1.06
5721757--5721785	13	2.3	13	94	5	51	82	17	0	0	0.66
5721778--5721818	10	4.1	10	80	0	55	70	12	0	17	1.16
5722255--5722291	3	12.3	3	100	0	74	67	0	0	32	0.91
5722743--5722869	60	2.1	60	86	0	182	41	14	22	22	1.89
5722755--5722895	60	2.3	60	85	2	176	43	13	20	22	1.87
5735500--5735585	25	3.3	27	76	11	88	41	0	1	56	1.06
5735505--5735581	28	2.9	28	83	11	99	41	0	1	57	1.07
5735578--5735639	20	3.0	21	78	17	58	48	0	0	51	1.00
5736489--5736541	26	2.0	26	85	3	70	7	11	1	79	1.01
5736497--5736534	20	2.0	20	89	5	60	7	10	0	81	0.87
5738026--5738120	44	2.2	45	78	5	104	37	2	8	51	1.44
5739880--5739918	20	1.9	21	89	5	62	17	0	28	53	1.44
5739880--5740013	28	4.7	29	82	7	141	21	0	29	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5739887--5739946	14	4.4	14	72	4	59	18	1	30	50	1.57
5739916--5739977	21	2.8	22	73	14	56	24	1	25	48	1.60
5739887--5740035	30	5.2	30	82	7	152	20	1	29	48	1.58
5739889--5739997	14	7.7	14	67	14	55	21	0	27	50	1.55
5740781--5740890	37	3.0	37	72	0	103	51	14	16	17	1.76
5740895--5740937	22	2.0	22	85	0	59	32	16	20	30	1.95
5741024--5741089	22	3.0	22	80	8	89	31	15	22	30	1.95
5740856--5741186	132	2.5	132	81	2	362	41	15	18	25	1.89
5741062--5741404	110	3.1	108	77	8	300	43	14	16	25	1.86
5741282--5741650	132	2.8	132	78	3	350	42	14	16	26	1.87
5741762--5741811	22	2.3	21	77	16	57	32	6	26	36	1.81
5741883--5741930	22	2.2	22	96	0	87	37	16	18	27	1.92
5741439--5741925	242	2.0	242	81	2	557	41	14	17	26	1.89
5741224--5742053	374	2.2	374	78	4	805	42	14	16	26	1.87
5741641--5742153	264	1.9	263	80	1	598	42	14	16	26	1.87
5741644--5742160	132	3.9	132	75	4	461	41	14	17	26	1.87
5742297--5742556	106	2.5	105	79	6	271	38	13	12	36	1.82
5747647--5747676	13	2.3	13	94	0	51	26	3	23	46	1.68
5751051--5751091	15	2.7	15	96	0	73	17	0	26	56	1.41
5751194--5751243	14	3.4	14	75	20	57	22	0	26	52	1.48
5751194--5751275	30	2.7	30	81	3	85	19	1	30	48	1.57
5751647--5751698	12	4.2	12	81	16	61	1	3	7	86	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5751662--5751698	11	3.5	11	92	3	58	0	0	8	91	0.41
5751647--5751692	13	3.5	13	87	3	65	2	4	6	86	0.75
5757047--5757091	15	2.9	15	83	9	54	48	0	4	46	1.22
5757030--5757138	52	2.2	49	83	11	132	51	0	3	44	1.19
5757030--5757145	18	6.5	17	77	13	74	51	0	3	44	1.18
5757079--5757145	18	3.7	18	82	7	82	55	0	1	43	1.09
5757045--5757137	33	2.8	31	77	20	91	49	0	3	47	1.17
5757194--5757231	20	1.9	20	88	0	58	39	13	2	44	1.57
5757422--5757460	18	2.2	18	85	0	51	48	2	0	48	1.15
5760859--5760918	3	20.0	3	100	0	120	66	0	0	33	0.92
5761293--5761359	2	33.5	2	93	0	116	49	2	0	47	1.16
5767439--5767488	21	2.3	23	80	16	61	62	10	12	16	1.55
5771136--5771182	13	3.8	13	86	8	62	59	2	0	38	1.09
5771262--5771288	14	1.9	14	100	0	54	66	11	0	22	1.22
5774528--5774586	26	2.3	27	76	8	68	47	1	5	45	1.34
5774607--5774649	19	2.2	20	80	12	54	60	0	0	39	0.97
5774606--5774699	40	2.4	41	82	8	99	57	4	1	37	1.25
5789955--5789997	13	3.4	12	84	9	50	4	9	0	86	0.71
5791772--5791812	16	2.6	16	92	3	66	19	0	2	78	0.87
5791784--5792002	3	70.7	3	69	22	68	30	4	1	63	1.25
5791801--5791937	54	2.5	55	81	10	156	32	5	1	61	1.27
5791801--5791990	27	7.3	25	75	15	131	31	5	2	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5791889--5791952	23	2.9	20	82	11	65	28	6	0	65	1.16
5791836--5791996	71	2.2	74	83	6	202	29	5	2	62	1.31
5791810--5791999	74	2.5	76	78	14	212	32	5	2	60	1.31
5791810--5792003	77	2.5	79	77	15	217	31	5	2	60	1.30
5792839--5792881	3	14.7	3	88	9	54	25	2	0	72	0.97
5792832--5792882	26	2.0	26	96	0	93	21	1	0	76	0.88
5792835--5792878	23	1.9	23	100	0	88	22	2	0	75	0.92
5792841--5792890	23	2.2	23	85	7	66	28	2	2	68	1.12
5792913--5792973	5	12.4	5	80	16	58	16	1	0	81	0.76
5792913--5792973	6	10.2	6	79	10	63	16	1	0	81	0.76
5792913--5792978	8	7.3	9	78	21	59	16	3	0	80	0.84
5792981--5793149	59	2.9	57	79	11	182	44	5	11	38	1.64
5803628--5803679	10	4.9	10	82	17	61	84	0	7	7	0.77
5803616--5803678	20	3.2	20	86	6	85	84	0	7	7	0.79
5803616--5803681	11	5.9	11	76	15	64	83	0	9	7	0.82
5804699--5804995	41	7.1	39	78	10	200	24	16	20	37	1.93
5804710--5805001	84	3.5	83	77	8	277	24	16	20	38	1.92
5804702--5804995	126	2.3	125	80	5	315	24	16	20	38	1.93
5804751--5805001	85	3.0	85	79	7	278	23	16	21	38	1.92
5805166--5805209	17	2.5	17	85	10	54	15	0	2	81	0.78
5805166--5805211	16	2.8	16	90	3	65	17	0	2	80	0.81
5805166--5805213	11	4.2	12	84	10	57	18	0	2	79	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5805198--5805312	27	4.6	23	75	16	72	29	4	1	64	1.23
5805218--5805287	27	2.6	27	82	8	88	30	4	2	62	1.28
5805243--5805382	3	44.0	3	71	23	51	30	2	2	64	1.20
5805184--5805339	23	6.6	23	74	17	115	26	3	1	67	1.15
5805248--5805345	23	4.1	23	82	8	124	26	4	2	67	1.19
5805353--5805382	10	3.1	10	95	4	53	36	0	0	63	0.95
5805221--5805381	16	10.2	16	65	24	58	30	3	2	63	1.25
5805712--5805761	19	2.6	19	100	0	100	34	10	12	44	1.75
5806302--5806339	5	7.4	5	83	16	51	15	2	0	81	0.80
5806305--5806340	16	2.2	17	90	9	58	13	2	0	83	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127