genome.fa.s656.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  60  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11746744--11746813	11	6.5	11	69	12	56	61	5	0	32	1.20
11746747--11746879	32	4.3	31	80	6	153	56	7	0	35	1.33
11746759--11746875	21	5.7	20	72	13	78	57	8	0	33	1.35
11746901--11746945	20	2.2	20	92	0	72	62	0	4	33	1.15
11746909--11746988	9	8.6	9	70	8	52	53	2	3	40	1.32
11747168--11747201	17	2.0	17	94	0	59	76	2	0	20	0.92
11747441--11747500	18	3.3	18	71	0	57	61	1	1	35	1.16
11747561--11747632	19	3.8	19	79	13	69	30	2	6	59	1.38
11747570--11747632	20	3.2	20	84	10	71	30	3	6	60	1.37
11747801--11747948	49	3.0	47	78	10	138	39	2	2	55	1.26
11747847--11747894	11	4.6	11	80	12	57	41	2	2	54	1.24
11747857--11747905	19	2.4	21	86	6	66	40	2	4	53	1.32
11747917--11748011	19	4.7	19	74	10	73	34	4	3	57	1.34
11749762--11749786	2	12.5	2	100	0	50	48	0	0	52	1.00
11751125--11751307	94	1.9	94	95	0	330	28	8	9	53	1.62
11753180--11753217	19	2.0	19	85	10	51	10	18	0	71	1.14
11754934--11754962	10	3.0	10	95	5	51	72	0	0	27	0.85
11755544--11755581	16	2.3	17	86	4	51	28	0	5	65	1.14
11755879--11755928	18	2.6	19	84	12	66	14	22	0	64	1.29
11761458--11761620	84	2.0	83	82	3	202	43	6	14	35	1.71
11763047--11763147	46	2.2	46	98	0	193	24	6	13	54	1.64
11763059--11763146	10	9.3	10	70	24	59	25	6	13	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11763381--11763438	29	2.0	30	82	3	73	32	5	5	56	1.43
11763500--11763536	2	18.5	2	88	0	56	48	0	2	48	1.15
11767057--11767205	74	2.0	74	97	0	280	32	16	17	33	1.92
11770059--11770262	82	2.5	80	80	10	236	48	4	1	45	1.33
11770231--11770295	19	3.5	19	71	10	53	53	3	1	41	1.25
11770059--11770355	82	3.7	79	75	15	224	49	4	2	44	1.32
11770307--11770355	18	2.7	17	75	12	53	59	2	2	36	1.21
11770042--11770372	76	4.2	78	76	13	250	49	4	2	44	1.33
11785458--11785502	22	2.1	21	87	4	63	66	6	0	26	1.16
11786402--11786655	125	2.0	125	96	0	472	43	11	9	35	1.75
11791581--11791647	30	2.2	30	94	0	116	52	0	1	46	1.09
11792757--11792803	6	7.8	6	95	0	85	19	0	0	80	0.70
11793188--11793295	29	3.8	29	76	11	91	49	0	0	49	1.13
11793186--11793256	16	4.6	15	70	26	51	47	0	1	50	1.09
11794151--11794203	6	8.2	6	83	10	61	30	5	1	62	1.29
11794564--11794600	18	2.1	17	90	5	56	35	2	0	62	1.10
11795038--11795093	16	3.5	16	77	0	58	51	1	7	39	1.40
11795029--11795109	32	2.5	33	84	6	103	53	2	6	38	1.40
11798055--11798367	80	3.9	80	85	5	384	26	18	11	43	1.84
11798196--11798367	87	2.0	86	86	1	220	25	16	11	47	1.80
11802460--11802514	2	27.5	2	96	0	101	0	49	0	50	1.00
11802988--11803031	23	2.0	23	82	8	56	68	0	2	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11807394--11807436	21	2.0	21	86	4	59	79	2	16	2	0.95
11809735--11809778	18	2.4	18	85	7	54	20	4	0	75	0.98
11810512--11810553	18	2.3	18	79	0	57	30	21	4	42	1.73
11814559--11814597	17	2.4	16	83	8	53	46	0	2	51	1.14
11814826--11814864	18	2.0	20	90	9	64	43	10	5	41	1.61
11814853--11814923	30	2.4	30	86	4	92	52	5	2	39	1.40
11816179--11816203	13	1.9	13	100	0	50	28	0	0	72	0.86
11816877--11816903	14	1.9	14	100	0	54	81	0	0	18	0.69
11818793--11818900	34	3.2	34	81	2	101	42	8	9	39	1.67
11820233--11820266	10	3.3	10	87	4	50	76	8	0	14	1.01
11821325--11821349	12	2.1	12	100	0	50	36	0	0	64	0.94
11821929--11821955	13	2.1	13	100	0	54	70	0	0	29	0.88
11822680--11822714	17	2.1	17	88	0	52	17	2	0	80	0.84
11826094--11826130	10	3.6	10	89	7	56	86	2	8	2	0.76
11827766--11827883	35	3.4	35	81	4	125	35	11	14	38	1.83
11828267--11828504	42	5.5	42	76	13	209	24	11	21	42	1.85
11828358--11828552	90	2.2	90	83	2	232	24	9	21	45	1.81
11828396--11828678	48	5.8	48	71	17	183	24	10	19	45	1.82
11828388--11828706	90	3.4	89	73	15	264	24	10	20	45	1.82
11828437--11828846	147	2.8	145	82	9	417	24	11	20	43	1.85
11828542--11828901	147	2.5	147	82	3	449	23	12	21	42	1.87
11828957--11829167	49	4.4	47	72	12	155	28	9	20	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11829031--11829210	100	1.8	100	83	0	243	30	7	20	42	1.80
11829148--11829278	68	1.9	68	88	0	199	33	8	17	40	1.80
11829217--11829358	51	2.8	50	81	5	160	28	11	20	39	1.88
11829564--11829606	23	1.9	23	85	4	61	81	9	4	4	0.97
11830812--11830847	18	2.0	17	89	10	54	30	0	5	63	1.17
11837746--11837787	18	2.3	18	87	0	57	40	9	16	33	1.81
11841403--11841445	1	43.0	1	100	0	86	100	0	0	0	0.00
11842568--11842597	14	2.1	14	93	0	51	76	0	0	23	0.78
11845620--11845650	15	2.1	15	93	0	53	77	0	3	19	0.90
11845594--11845643	23	2.2	23	86	10	68	70	2	6	22	1.20
11845951--11845983	9	3.8	9	84	8	50	3	9	6	81	0.95
11845838--11846161	117	2.6	123	82	12	349	27	15	12	44	1.82
11846069--11846112	1	44.0	1	81	0	52	0	0	9	90	0.44
11846070--11846112	8	5.8	8	84	15	65	0	0	9	90	0.45
11846069--11846112	21	2.1	21	100	0	88	0	0	9	90	0.44
11846119--11846530	40	10.0	41	87	9	572	37	21	17	22	1.94
11846119--11846536	83	5.1	81	88	7	612	37	22	17	22	1.94
11847059--11847091	12	2.8	12	100	0	66	54	18	0	27	1.44
11847761--11847820	8	7.8	8	86	1	70	8	8	0	83	0.82
11847769--11847848	16	5.2	14	82	11	61	7	11	0	81	0.88
11847759--11847834	16	4.9	14	80	16	71	6	10	0	82	0.82
11847764--11847822	23	2.5	23	88	2	82	8	8	0	83	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11847759--11847837	24	3.5	23	81	10	92	7	11	0	81	0.89
11847815--11847858	14	3.4	12	82	14	52	6	18	0	75	1.02
11850771--11850820	22	2.3	22	100	0	100	30	16	24	30	1.96
11851715--11851883	59	2.9	59	94	3	288	34	11	8	45	1.71
11851898--11851931	14	2.3	15	90	10	52	82	0	0	17	0.67
11851898--11851931	5	6.8	5	90	10	52	82	0	0	17	0.67
11853959--11854023	23	2.9	22	82	13	80	75	3	3	18	1.07
11858525--11859142	184	3.3	185	84	7	750	35	14	12	37	1.84
11858525--11859208	371	1.8	374	81	6	870	35	14	12	38	1.83
11859285--11859681	185	2.1	186	83	0	481	34	12	12	40	1.82
11858778--11859729	506	1.9	509	86	2	1380	34	12	12	40	1.81
11860165--11860229	28	2.3	28	91	0	103	26	0	20	53	1.45
11860188--11860246	28	2.1	28	80	0	64	30	3	16	49	1.63
11861924--11861988	23	2.9	23	77	13	73	30	1	6	61	1.29
11863474--11863542	35	2.0	35	85	0	93	33	15	13	37	1.86
11866741--11866778	15	2.5	15	83	8	51	65	0	2	31	1.06
11866830--11866885	12	4.4	14	80	13	59	41	0	5	53	1.24
11866848--11866901	21	2.4	22	81	15	65	46	0	5	48	1.25
11868731--11868786	29	2.0	28	86	10	78	41	3	0	55	1.17
11868993--11869044	13	4.2	13	75	9	54	46	0	1	51	1.12
11868997--11869098	42	2.5	39	78	16	91	48	0	2	49	1.16
11869270--11869355	29	2.8	30	85	10	111	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11869266--11869369	33	3.2	32	76	15	99	44	3	0	50	1.26
11874989--11875027	19	2.1	19	90	4	62	38	10	10	41	1.73
11883617--11883658	22	1.9	22	90	0	66	45	9	11	33	1.73
11893309--11893343	17	2.1	17	88	0	52	77	2	17	2	1.02
11897681--11897723	19	2.3	19	84	8	52	62	2	4	30	1.28
11898684--11898737	14	3.9	14	73	20	51	61	0	1	37	1.07
11899552--11899583	2	16.5	2	93	6	57	46	0	0	53	1.00
11899554--11899584	15	2.1	15	100	0	62	45	0	0	54	0.99
11909160--11909207	12	4.4	11	82	12	55	64	0	18	16	1.29
11909168--11909208	12	3.5	12	90	3	66	58	0	19	21	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127