genome.fa.s656.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  20  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4634951--4634975	5	5.0	5	100	0	50	80	0	0	20	0.72
4644202--4644306	30	3.5	29	77	19	90	46	9	0	43	1.36
4644345--4644388	21	2.1	21	83	8	54	56	0	2	40	1.11
4644646--4644693	18	2.7	18	80	9	53	45	2	0	52	1.12
4644689--4644777	16	5.6	17	66	24	52	57	0	0	42	0.98
4644701--4644799	44	2.3	44	77	16	109	55	0	0	44	0.99
4645277--4645332	27	2.1	27	83	6	69	25	14	5	55	1.60
4649295--4649324	2	15.0	2	92	0	51	53	0	0	46	1.00
4652827--4652878	16	3.4	16	94	5	90	61	3	0	34	1.14
4653714--4653761	22	2.2	22	88	0	69	47	2	0	50	1.12
4656945--4657002	3	19.0	3	79	10	55	29	1	5	63	1.25
4656945--4656988	15	2.9	15	86	3	61	29	0	6	63	1.20
4656953--4657009	18	3.2	18	82	7	80	24	1	8	64	1.31
4656950--4657009	21	3.0	21	76	14	63	26	1	8	63	1.32
4657836--4657872	3	12.3	3	100	0	74	64	0	0	35	0.94
4658737--4658871	61	2.2	63	82	7	170	37	14	15	31	1.88
4658756--4658884	61	2.1	63	81	7	149	40	13	16	29	1.87
4659163--4659391	61	3.6	62	72	8	185	37	12	15	35	1.85
4659163--4659282	63	1.9	64	81	5	145	36	12	16	34	1.87
4665335--4665404	25	2.8	25	84	0	95	50	28	5	15	1.67
4665389--4665460	28	2.6	28	86	0	108	47	29	2	20	1.64
4665433--4665534	52	2.0	52	96	0	186	48	25	1	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4671530--4671915	161	2.4	159	81	8	426	32	11	15	39	1.84
4673222--4673308	34	2.6	33	80	7	95	39	14	10	35	1.81
4674386--4674448	22	2.8	22	77	15	58	61	11	1	25	1.38
4676821--4676857	3	12.3	3	100	0	74	67	0	0	32	0.91
4677741--4677783	16	2.7	16	100	0	86	39	0	18	41	1.51
4678876--4678913	18	2.1	19	85	14	53	42	5	13	39	1.66
4681016--4681096	20	4.1	20	67	17	53	37	2	4	55	1.35
4683902--4683935	15	2.2	16	89	5	52	0	8	2	88	0.62
4684637--4684692	24	2.3	24	81	3	67	30	14	3	51	1.59
4685234--4685274	2	21.5	2	81	18	52	46	2	0	51	1.14
4688447--4688501	24	2.3	24	83	0	65	30	12	5	50	1.63
4692659--4692684	2	13.0	2	100	0	52	50	0	0	50	1.00
4695943--4695989	20	2.3	21	79	17	55	2	29	2	65	1.15
4697830--4697871	2	21.0	2	90	0	66	52	0	2	45	1.13
4699546--4699585	20	2.0	20	85	0	53	30	12	15	42	1.83
4702955--4703001	25	1.9	24	87	12	69	31	8	14	44	1.76
4703890--4703919	15	2.0	15	93	0	51	33	10	20	36	1.86
4704535--4706108	575	2.7	568	90	3	2357	41	5	11	41	1.65
4706326--4706369	16	2.8	16	92	0	70	25	15	38	20	1.92
4706419--4706469	21	2.5	21	90	3	77	49	1	1	47	1.24
4706463--4706519	12	4.9	12	78	8	55	59	0	0	40	0.97
4707842--4707895	25	2.2	24	83	6	63	35	5	18	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707904--4707971	31	2.2	31	82	10	77	29	23	20	26	1.99
4708512--4708976	57	7.7	59	84	11	590	45	7	12	34	1.71
4708521--4708609	27	3.2	27	63	20	65	42	5	13	38	1.68
4708495--4708976	121	4.0	123	89	6	686	46	7	12	33	1.71
4708646--4708735	30	3.1	30	65	26	84	40	8	15	35	1.79
4708642--4708730	27	3.2	27	65	20	74	40	6	15	37	1.74
4712824--4712894	9	7.9	9	72	20	51	76	0	21	2	0.92
4712831--4712866	11	3.3	11	88	0	54	83	0	16	0	0.65
4712824--4712866	22	2.0	22	90	9	70	81	0	18	0	0.69
4712815--4712894	31	2.6	32	81	15	96	75	0	21	3	0.96
4714095--4714756	41	16.1	41	86	9	899	22	17	23	36	1.95
4714247--4714304	30	1.9	30	100	0	116	20	17	24	37	1.93
4714274--4714756	84	5.8	84	92	3	760	22	17	24	36	1.95
4714763--4714822	1	60.0	1	83	0	75	91	6	0	1	0.47
4714765--4714815	11	4.8	11	90	9	88	92	7	0	0	0.40
4714763--4714814	20	2.7	20	96	3	97	92	7	0	0	0.39
4715446--4715499	25	2.2	24	83	6	63	35	5	18	40	1.74
4715508--4715575	31	2.2	31	82	10	77	29	23	20	26	1.99
4716009--4716049	17	2.4	17	83	0	55	14	2	2	80	0.92
4716011--4716049	12	3.2	12	82	7	51	12	2	2	82	0.89
4716119--4716469	59	5.7	60	88	4	447	45	7	13	33	1.71
4719198--4719288	44	2.1	44	95	0	164	35	16	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4722871--4722921	21	2.4	21	96	0	93	35	19	5	39	1.76
4723159--4723191	13	2.5	14	85	14	52	42	0	0	57	0.98
4723342--4723377	15	2.4	15	85	0	54	52	2	0	44	1.15
4724059--4724126	24	3.0	23	81	12	79	67	0	5	26	1.13
4724091--4724124	18	1.9	17	94	5	59	64	0	11	23	1.26
4724092--4724131	18	2.3	17	82	4	53	72	0	10	17	1.11
4724544--4724572	14	2.1	14	93	6	51	86	0	0	13	0.58
4730749--4730774	2	13.0	2	100	0	52	50	0	0	50	1.00
4742258--4742296	17	2.4	16	87	12	53	48	0	2	48	1.15
4742269--4742319	20	2.8	17	75	18	57	50	0	7	41	1.31
4742282--4742327	20	2.2	20	85	11	58	45	0	10	43	1.39
4742946--4742987	2	21.0	2	100	0	84	50	0	50	0	1.00
4760314--4760389	32	2.4	32	97	0	143	42	5	10	42	1.62
4766998--4767156	68	2.3	69	79	10	171	42	5	3	49	1.42
4767057--4767218	74	2.2	73	81	3	184	39	3	3	53	1.34
4767188--4767229	22	2.0	21	86	13	59	40	0	2	57	1.12
4767457--4767620	83	2.0	83	91	0	265	38	3	7	50	1.49
4777123--4777151	2	14.5	2	100	0	58	48	0	0	51	1.00
4777464--4777531	22	3.0	23	85	10	86	42	22	16	19	1.89
4777478--4777531	22	2.5	22	93	0	90	46	18	18	16	1.85
4777546--4777864	163	2.0	163	98	0	611	26	12	21	40	1.88
4777816--4777913	47	2.1	47	98	0	187	37	7	24	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4777653--4778287	213	3.0	210	96	1	1189	29	11	22	37	1.89
4778031--4778124	47	2.0	47	97	0	179	37	7	25	29	1.83
4779195--4779219	13	1.9	13	100	0	50	60	24	16	0	1.36
4781143--4781192	21	2.3	20	83	10	55	28	0	0	72	0.86
4781145--4781177	13	2.6	13	95	4	59	21	0	0	78	0.75
4781555--4781613	10	5.9	10	69	15	50	25	0	3	71	1.02
4783248--4784529	48	26.6	48	80	8	1076	38	20	11	29	1.88
4783248--4784529	97	13.3	96	80	7	1147	38	20	11	29	1.88
4792308--4792375	32	2.1	32	100	0	136	51	8	16	23	1.72
4799809--4799867	25	2.4	24	82	5	64	10	5	6	77	1.10
4799836--4799879	18	2.4	17	82	14	52	18	6	2	72	1.17
4800636--4800683	25	2.0	25	87	4	71	77	10	2	10	1.09
4800648--4800685	17	2.2	17	90	0	58	81	7	2	7	0.96
4801622--4801705	37	2.3	37	85	4	107	36	30	15	16	1.90
4811208--4811655	42	11.0	40	86	8	570	23	20	21	35	1.96
4811208--4811655	201	2.2	204	87	8	628	23	20	21	35	1.96
4811662--4811810	1	149.0	1	75	0	118	86	6	1	5	0.75
4811661--4811811	50	3.0	48	82	14	164	85	7	1	5	0.79
4812820--4812862	9	4.9	9	80	13	54	13	0	6	79	0.93
4812822--4812859	17	2.2	17	100	0	76	15	0	5	78	0.91
4812958--4813023	28	2.4	28	100	0	132	31	12	27	28	1.92
4813242--4814393	97	11.8	98	78	10	838	38	21	11	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4813242--4814393	48	23.6	48	77	11	889	38	21	11	28	1.88
4814749--4814796	23	2.0	24	84	4	62	12	25	6	56	1.59
4826215--4826248	13	2.7	13	95	4	61	29	0	0	70	0.87
4826909--4826992	37	2.3	37	85	4	107	16	16	32	34	1.92
4827550--4827591	16	2.6	16	100	0	84	4	4	14	76	1.12
4827878--4827918	16	2.6	16	80	0	55	17	12	56	14	1.68
4827956--4828019	9	7.1	9	72	13	51	9	0	9	81	0.88
4827977--4828017	17	2.3	18	95	4	75	12	0	12	75	1.05
4828117--4828184	28	2.4	28	77	0	73	33	16	23	26	1.95
4828760--4828816	18	2.9	20	82	12	73	73	1	7	17	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127