genome.fa.s656.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  99  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18559293--18559349	29	1.9	30	85	3	80	63	1	3	31	1.22
18578960--18579013	21	2.6	21	77	8	58	27	5	0	66	1.13
18579252--18579312	28	2.2	28	85	5	79	42	0	1	55	1.09
18579674--18579714	19	2.2	19	91	8	66	4	7	2	85	0.81
18579674--18579714	18	2.2	19	91	4	66	4	7	2	85	0.81
18580489--18580519	15	2.1	15	100	0	62	58	0	6	35	1.24
18584450--18584524	16	4.8	16	70	6	64	41	21	10	26	1.86
18584453--18584524	31	2.3	31	83	9	85	43	20	11	25	1.85
18584602--18584658	29	2.0	29	82	6	71	36	10	12	40	1.77
18586327--18586498	85	2.0	85	88	2	256	39	17	12	30	1.87
18586982--18587590	65	9.4	65	74	6	282	27	20	13	37	1.91
18586991--18587674	129	5.3	127	74	8	372	27	21	12	38	1.90
18586982--18587338	193	1.8	193	82	4	452	24	21	15	38	1.92
18587124--18587674	65	8.6	65	76	5	280	28	21	11	38	1.89
18588222--18588312	36	2.5	36	78	5	94	28	13	2	56	1.49
18588299--18588560	48	5.5	47	76	9	196	29	16	5	48	1.69
18588306--18588559	47	5.4	48	76	7	225	29	16	5	47	1.70
18588305--18588563	95	2.7	95	83	7	314	29	17	5	47	1.71
18588536--18588633	36	2.7	36	82	0	115	27	16	7	48	1.72
18588834--18588878	23	1.9	24	82	13	58	37	11	4	46	1.60
18589270--18589308	16	2.5	15	87	4	51	51	12	7	28	1.67
18592231--18592279	18	3.0	16	77	13	55	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18592229--18592279	17	3.1	17	81	13	61	50	0	1	47	1.12
18596285--18596353	22	3.2	21	75	17	61	47	5	7	39	1.55
18596494--18596545	22	2.3	22	86	3	68	51	1	5	40	1.37
18596578--18596644	22	3.0	22	74	8	73	56	0	2	40	1.14
18596578--18596644	11	6.1	11	77	10	66	56	0	2	40	1.14
18596578--18596641	33	1.9	33	81	12	78	56	0	3	40	1.15
18596576--18596670	44	2.2	45	79	9	106	54	2	5	37	1.35
18596621--18596765	65	2.2	65	78	6	159	51	3	7	37	1.48
18596659--18596998	22	15.6	21	67	15	129	48	4	10	36	1.57
18597008--18597228	22	10.1	22	69	12	91	45	7	9	38	1.63
18597475--18597583	22	5.0	22	78	0	101	53	7	5	33	1.52
18597507--18597583	11	7.0	11	73	5	75	53	7	2	36	1.44
18597507--18597810	22	13.9	22	67	15	101	49	6	6	37	1.55
18597727--18597830	43	2.4	43	85	3	127	49	2	6	41	1.44
18597750--18597830	22	3.7	22	73	15	78	48	3	7	40	1.49
18597908--18598029	22	5.5	22	77	9	124	45	9	4	40	1.54
18597997--18598044	22	2.2	22	84	0	60	47	10	4	37	1.57
18598419--18598477	21	2.8	21	84	0	82	54	5	5	35	1.45
18598429--18598477	10	4.6	11	75	10	57	51	6	4	38	1.46
18610445--18610484	20	2.1	19	90	4	62	52	0	0	47	1.00
18612479--18612510	16	2.0	16	93	0	55	18	28	12	40	1.87
18614902--18614992	39	2.3	39	98	0	173	41	14	2	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18614929--18614993	19	3.4	19	67	12	60	43	10	3	43	1.55
18614909--18614973	20	3.3	20	64	12	53	40	16	1	41	1.58
18615296--18615439	74	1.9	74	91	0	234	32	20	0	46	1.51
18616252--18616298	8	5.8	8	94	2	67	53	4	0	42	1.20
18617616--18618788	161	7.3	159	77	7	912	43	13	8	33	1.75
18617939--18618762	162	5.1	160	79	5	766	44	14	8	33	1.75
18617667--18618762	483	2.3	474	83	4	1333	43	13	8	33	1.75
18624817--18624904	35	2.7	32	76	13	88	52	13	9	25	1.70
18628394--18628430	18	2.1	18	94	0	65	56	0	10	32	1.34
18633670--18633717	21	2.3	21	74	0	51	45	14	20	18	1.85
18638585--18638609	13	1.9	13	100	0	50	48	0	12	40	1.40
18641172--18641249	39	2.0	39	94	0	138	33	7	41	17	1.79
18641568--18641619	20	2.7	20	82	11	63	23	1	3	71	1.13
18641568--18641624	19	2.9	19	84	7	62	22	1	3	71	1.10
18647709--18647744	3	12.0	3	100	0	72	33	0	0	66	0.92
18648539--18648572	17	2.1	16	94	5	59	23	14	0	61	1.33
18648964--18648996	17	2.0	17	88	5	50	27	0	0	72	0.85
18651960--18652270	155	2.0	158	90	1	493	32	21	9	36	1.86
18656030--18656066	15	2.4	15	86	4	56	37	0	5	56	1.22
18660840--18660874	18	2.0	17	94	5	61	31	0	0	68	0.90
18666698--18666755	27	2.1	27	93	0	98	41	8	3	46	1.51
18667165--18667196	15	2.1	15	94	0	55	53	9	12	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18668050--18668090	21	1.9	22	90	5	66	65	2	0	31	1.05
18668790--18668847	30	1.9	30	85	0	80	48	0	1	50	1.11
18673648--18673690	15	2.9	15	82	6	52	58	2	4	34	1.32
18678292--18678344	27	2.0	26	85	3	70	58	1	5	33	1.32
18690888--18690924	13	2.8	13	91	0	56	2	13	0	83	0.74
18690894--18690927	7	5.0	7	92	7	52	0	17	0	82	0.67
18690889--18690936	20	2.4	19	80	13	51	4	14	0	81	0.84
18690994--18691022	12	2.3	13	94	5	51	75	0	0	24	0.80
18690993--18691025	13	2.5	14	85	14	52	72	0	0	27	0.85
18703538--18703577	11	3.6	11	80	12	55	30	10	2	57	1.45
18703537--18703583	22	2.1	22	100	0	94	31	8	4	55	1.49
18712595--18712635	20	2.0	20	86	9	57	31	0	0	68	0.90
18713921--18713947	2	13.5	2	100	0	54	51	0	0	48	1.00
18714538--18714686	82	1.8	80	81	2	181	31	14	12	42	1.82
18728560--18728598	20	1.9	20	85	15	53	23	0	10	66	1.22
18729075--18729114	3	13.3	3	100	0	80	32	0	0	67	0.91
18730087--18730134	20	2.5	18	80	12	51	16	10	0	72	1.10
18730177--18730221	21	2.1	22	84	12	58	71	2	4	22	1.15
18730267--18730540	111	2.4	111	85	6	352	47	6	9	36	1.60
18731936--18731986	19	2.7	19	84	0	66	52	21	3	21	1.62
18732422--18732450	3	9.7	3	100	0	58	34	0	31	34	1.58
18732514--18732570	29	2.0	29	96	0	105	50	10	1	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18732522--18732584	29	2.2	28	83	8	81	58	7	1	31	1.36
18738752--18738789	7	5.4	7	96	0	58	21	0	34	44	1.52
18740164--18740193	10	3.1	10	95	4	53	36	0	0	63	0.95
18742140--18742203	21	3.3	21	66	26	52	14	10	3	71	1.25
18746966--18747047	43	1.9	43	82	0	101	34	17	12	36	1.87
18753275--18753345	24	2.9	24	79	14	74	33	1	1	63	1.12
18753463--18753525	3	21.0	3	100	0	126	33	0	0	66	0.92
18754793--18754830	3	12.7	3	100	0	76	65	0	0	34	0.93
18754999--18755090	40	2.3	40	92	0	157	42	19	11	26	1.86
18755025--18755315	40	7.3	39	77	10	184	41	18	12	26	1.86
18755065--18755190	39	3.2	39	76	8	139	38	20	13	27	1.90
18755178--18755353	40	4.6	40	78	12	154	45	18	10	25	1.81
18755276--18755347	33	2.2	33	89	0	108	40	19	15	25	1.90
18767382--18767446	23	2.7	23	79	13	69	30	3	0	66	1.07
18767382--18767446	24	2.7	25	79	11	73	30	3	0	66	1.07
18767761--18767810	8	5.6	8	84	13	55	20	2	0	78	0.86
18767765--18767803	20	2.0	20	85	10	53	23	2	0	74	0.94
18768019--18768055	3	12.3	3	100	0	74	67	0	0	32	0.91
18768937--18768971	3	11.7	3	100	0	70	65	0	0	34	0.93
18769501--18769532	2	17.0	2	87	12	50	50	0	0	50	1.00
18769530--18769560	3	10.3	3	92	0	53	64	3	0	32	1.09
18769991--18770020	13	2.3	13	100	0	60	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18770182--18770240	16	3.5	15	74	26	55	32	1	1	64	1.13
18770198--18770227	12	2.5	12	94	0	51	33	0	3	63	1.11
18770226--18770275	24	2.0	25	81	11	59	42	0	2	56	1.11
18770902--18770936	7	5.0	7	96	0	61	25	14	0	60	1.35
18772038--18772077	2	20.0	2	100	0	80	0	50	0	50	1.00
18773269--18773381	4	28.2	4	81	0	118	46	5	5	43	1.49
18773269--18773381	14	8.1	14	81	0	118	46	5	5	43	1.49
18773269--18773381	22	5.1	22	83	0	118	46	5	5	43	1.49
18777080--18777110	3	10.3	3	100	0	62	32	32	0	35	1.58
18777147--18777183	3	12.3	3	100	0	74	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127