genome.fa.s656.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  38  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7751504--7751836	173	1.9	171	89	3	517	30	18	21	29	1.97
7753417--7753460	22	2.0	22	86	0	61	34	13	11	40	1.81
7753603--7753652	24	2.1	24	88	7	75	20	20	8	52	1.71
7753717--7753779	25	2.5	25	89	0	90	20	28	15	34	1.94
7755439--7755568	63	2.1	63	91	0	206	30	25	11	33	1.91
7757517--7757560	22	2.0	22	95	0	79	31	11	13	43	1.80
7757703--7757754	25	2.1	25	89	7	79	21	21	7	50	1.73
7763271--7763307	19	1.9	19	100	0	74	37	10	10	40	1.75
7769394--7769429	16	2.3	16	90	4	56	38	0	0	61	0.96
7771557--7771603	14	3.4	14	82	11	62	51	2	4	42	1.33
7771716--7771786	26	2.8	25	78	4	79	45	4	1	49	1.30
7780331--7780357	2	13.5	2	100	0	54	51	0	0	48	1.00
7783209--7783240	3	10.7	3	100	0	64	34	31	0	34	1.58
7785619--7786089	238	2.0	240	86	4	673	48	4	7	39	1.51
7788213--7788272	25	2.4	25	80	2	77	56	1	0	41	1.09
7788231--7788382	41	3.6	42	71	19	102	53	1	1	42	1.23
7788209--7788456	9	28.3	9	65	24	63	55	1	1	41	1.17
7788284--7788343	32	1.9	31	83	10	77	51	1	3	43	1.28
7788356--7788487	15	9.3	15	72	16	113	59	1	0	37	1.12
7788368--7788463	6	15.0	6	73	20	54	59	1	1	38	1.11
7788219--7788489	27	10.4	26	69	19	122	56	1	1	40	1.15
7788358--7788527	69	2.5	71	78	9	190	58	1	0	39	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7795549--7795576	2	14.0	2	100	0	56	50	0	0	50	1.00
7799209--7799243	2	17.5	2	100	0	70	48	0	0	51	1.00
7799790--7799864	32	2.3	32	81	4	80	56	5	1	37	1.31
7799946--7799990	23	1.9	23	86	4	63	26	11	2	60	1.42
7800759--7800814	8	6.6	8	75	16	51	48	1	0	50	1.11
7802737--7802765	2	14.5	2	100	0	58	51	0	48	0	1.00
7803715--7803772	30	2.0	30	82	3	73	46	0	5	48	1.24
7803736--7803787	27	2.0	26	88	3	77	48	1	3	46	1.31
7803748--7803820	26	3.0	24	79	16	71	47	1	1	49	1.18
7803720--7803820	25	3.8	25	76	16	87	47	0	1	49	1.19
7806126--7806562	87	5.0	86	77	7	420	45	16	12	25	1.82
7806141--7806556	130	3.2	128	78	8	457	46	15	11	26	1.80
7806126--7806562	43	10.1	43	78	8	384	45	16	12	25	1.82
7806987--7807056	23	3.1	23	72	4	61	41	17	10	31	1.82
7807162--7807188	14	1.9	14	100	0	54	37	7	7	48	1.59
7808486--7808614	7	18.1	7	84	10	122	14	11	0	73	1.09
7815601--7815631	16	1.9	16	93	0	53	74	6	0	19	1.03
7824190--7824239	21	2.4	21	86	0	64	50	2	12	36	1.51
7827946--7828005	2	30.0	2	100	0	120	0	50	0	50	1.00
7829441--7829538	35	2.8	35	93	0	160	26	47	8	17	1.75
7829441--7829520	11	6.9	11	68	20	56	27	50	6	16	1.69
7830412--7830450	13	3.1	13	92	3	62	76	15	2	5	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7830429--7830466	18	2.1	19	85	5	51	76	15	5	2	1.08
7830849--7830904	28	2.0	28	85	0	76	41	17	17	23	1.90
7831558--7831673	15	7.9	15	72	7	94	46	32	0	20	1.51
7831556--7831671	30	4.0	29	85	7	146	46	31	0	22	1.52
7831558--7831676	44	2.7	44	81	3	132	47	31	0	20	1.50
7831800--7831891	29	3.2	29	77	7	89	43	30	2	23	1.66
7831974--7832039	14	4.7	14	74	7	53	51	27	0	21	1.48
7831921--7832041	28	4.2	28	77	11	120	49	25	0	24	1.50
7831974--7832041	15	4.8	15	71	10	63	51	26	0	22	1.48
7831943--7832053	28	3.9	27	79	12	107	52	23	0	23	1.53
7832030--7832081	21	2.4	22	80	3	61	53	25	5	15	1.63
7833944--7833987	23	2.0	23	86	4	63	38	6	4	50	1.50
7838092--7838122	9	3.6	9	91	8	55	80	0	19	0	0.71
7838633--7838671	18	2.1	19	95	4	71	25	25	12	35	1.92
7838687--7838728	9	4.7	9	77	11	50	85	0	4	9	0.72
7840736--7840904	86	2.0	86	83	2	214	24	17	17	41	1.90
7840824--7841034	109	1.9	109	85	1	289	24	19	16	39	1.91
7841021--7841086	22	3.0	22	84	6	71	24	13	22	39	1.90
7840951--7841347	219	1.8	218	83	4	532	23	18	18	39	1.92
7841509--7841570	22	2.8	22	77	0	70	30	20	17	30	1.96
7841158--7841668	132	3.9	132	80	5	543	24	21	17	36	1.94
7841162--7841668	263	1.9	264	84	2	671	24	21	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7841553--7841822	109	2.5	109	82	6	321	23	21	18	37	1.94
7841620--7841857	109	2.2	109	77	6	239	23	21	17	37	1.94
7841787--7841900	36	3.2	36	82	2	149	21	20	14	42	1.88
7843627--7843868	14	16.2	14	70	13	128	49	30	0	19	1.52
7843627--7843745	16	7.7	16	80	11	124	47	34	0	17	1.48
7843627--7843760	30	4.4	30	76	14	125	47	33	0	18	1.49
7843627--7843760	44	2.9	44	84	10	164	47	33	0	18	1.49
7843739--7843926	74	2.6	74	80	5	195	48	27	1	23	1.58
7843827--7843968	58	2.4	59	79	12	148	47	26	1	24	1.60
7843884--7844134	87	2.9	87	78	8	221	46	29	1	23	1.60
7843937--7844134	58	3.4	57	71	11	170	46	30	1	21	1.58
7843901--7844148	29	8.6	29	70	8	125	46	31	1	20	1.59
7844181--7844220	15	2.7	15	88	3	64	55	22	0	22	1.44
7844161--7844222	22	2.9	22	77	20	76	51	24	0	24	1.48
7844161--7844221	15	4.2	15	73	21	58	52	24	0	22	1.47
7846127--7846327	102	2.0	101	82	12	245	38	30	7	22	1.82
7846363--7846412	19	2.6	19	90	6	75	50	42	2	6	1.38
7847588--7847621	12	2.8	12	100	0	68	61	0	5	32	1.20
7850426--7850891	156	2.9	161	93	2	764	38	17	14	29	1.90
7850936--7850962	1	27.0	1	100	0	54	100	0	0	0	0.00
7851286--7851332	19	2.5	19	82	0	58	21	19	29	29	1.97
7851950--7851978	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7852141--7852205	20	3.2	20	91	0	94	20	30	32	16	1.95
7852319--7852415	1	97.0	1	77	0	86	4	0	8	87	0.65
7852305--7852415	11	8.8	12	76	20	77	6	0	8	85	0.74
7852319--7852416	30	3.2	30	80	12	110	4	0	9	86	0.68
7852319--7852413	40	2.3	40	83	3	127	4	0	8	87	0.66
7852423--7852955	40	13.2	39	88	10	770	37	21	16	23	1.93
7853967--7854072	9	11.8	9	74	17	87	11	12	0	75	1.10
7853962--7854059	8	11.2	8	77	18	72	11	14	0	74	1.07
7853955--7854044	46	1.9	47	91	6	148	11	16	0	72	1.12
7853967--7854060	17	5.3	17	75	13	82	10	12	0	76	1.02
7853995--7854069	17	4.4	17	84	6	80	12	9	1	77	1.06
7858940--7858969	15	2.1	14	93	6	51	6	36	6	50	1.55
7864229--7864708	156	3.0	161	92	3	767	39	17	14	28	1.89
7864725--7864749	1	25.0	1	100	0	50	100	0	0	0	0.00
7865064--7865110	19	2.5	19	82	0	58	21	19	29	29	1.97
7865732--7865760	3	9.7	3	100	0	58	68	0	0	31	0.89
7865853--7865881	14	2.1	14	93	6	51	89	0	10	0	0.48
7865920--7865984	20	3.2	20	91	0	94	20	30	32	16	1.95
7866165--7866612	156	2.9	152	92	4	758	30	14	18	37	1.90
7867183--7867625	226	2.0	226	97	0	832	39	16	17	27	1.91
7867741--7868466	42	17.1	42	89	3	1035	24	16	22	36	1.94
7868270--7868369	49	2.0	50	96	1	184	20	17	27	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7868228--7868410	91	2.0	91	94	0	321	21	15	24	37	1.93
7868325--7868466	41	3.4	41	84	4	187	24	15	22	37	1.93
7868473--7868549	9	8.3	9	79	11	75	84	7	0	7	0.78
7868473--7868549	8	9.5	8	76	12	59	84	7	0	7	0.78
7868479--7868549	20	3.8	18	82	12	90	84	7	0	8	0.78
7868481--7868549	28	2.4	29	79	11	81	84	7	0	8	0.79
7868819--7868885	3	22.3	3	77	22	70	32	0	1	65	1.02
7869254--7869303	26	2.0	25	88	4	73	24	4	18	54	1.61
7869860--7869919	17	3.7	16	78	8	59	15	6	3	75	1.15
7869859--7869922	28	2.3	27	82	15	69	15	6	3	75	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127