genome.fa.s656.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  69  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13402774--13402815	16	2.6	16	82	10	50	42	0	0	57	0.99
13402817--13402876	27	2.3	27	82	8	70	31	5	3	60	1.35
13408694--13408733	2	20.0	2	94	0	71	47	0	0	52	1.00
13412507--13412545	21	2.0	20	85	10	53	12	12	2	71	1.24
13416369--13416530	61	2.7	60	82	3	198	31	12	13	42	1.81
13429409--13429682	136	2.0	136	99	0	539	30	19	14	35	1.91
13434843--13434867	5	5.0	5	100	0	50	60	40	0	0	0.97
13435297--13435328	2	16.5	2	93	6	57	50	0	0	50	1.00
13435297--13435325	15	1.9	15	100	0	58	51	0	0	48	1.00
13439810--13439844	12	3.0	12	91	4	54	65	11	0	22	1.24
13444826--13444876	22	2.3	22	96	0	93	11	7	60	19	1.55
13445102--13445145	21	2.1	21	83	8	54	31	0	2	65	1.05
13447051--13447096	21	2.0	24	88	12	71	15	6	19	58	1.58
13448519--13448615	6	18.4	5	79	12	65	23	0	4	72	1.02
13448525--13448562	14	2.7	14	88	8	51	18	0	5	76	0.97
13448572--13448615	3	15.0	3	90	4	72	29	0	2	68	1.02
13449066--13449106	20	2.0	22	85	9	59	56	2	2	39	1.26
13449391--13449458	30	2.3	30	84	0	82	38	10	5	45	1.63
13459152--13459185	17	2.0	17	88	0	50	82	8	8	0	0.85
13460426--13460459	17	2.0	17	100	0	68	29	47	0	23	1.52
13465113--13465147	18	1.9	18	94	0	61	25	17	8	48	1.75
13467512--13467646	30	4.6	28	74	13	110	36	4	0	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13467508--13467648	60	2.4	60	81	7	155	36	4	0	58	1.23
13467610--13467657	23	2.0	24	88	4	71	39	4	0	56	1.19
13467946--13467972	6	4.5	6	100	0	54	0	33	0	66	0.92
13471079--13471119	20	2.0	20	85	0	55	26	2	53	17	1.56
13471318--13471529	62	3.3	62	77	10	205	33	12	14	39	1.84
13471813--13471896	35	2.4	34	76	2	87	34	10	16	38	1.84
13476916--13476969	21	2.6	21	90	0	90	35	24	11	29	1.90
13483004--13483931	187	5.1	186	79	8	961	36	11	10	42	1.75
13484252--13484607	182	2.0	181	94	0	622	37	17	9	35	1.82
13484897--13484945	12	4.0	12	81	5	62	20	8	30	40	1.81
13484904--13484958	25	2.2	25	87	6	76	23	9	27	40	1.85
13488160--13488229	35	2.0	35	83	5	88	34	14	12	38	1.84
13488295--13489210	305	3.0	300	80	7	899	35	15	12	36	1.86
13489854--13490331	242	2.0	241	85	4	651	35	12	11	41	1.78
13490259--13490378	63	1.9	62	86	5	170	36	5	12	45	1.66
13489854--13490490	242	2.6	240	80	6	592	35	12	10	41	1.78
13495622--13495655	15	2.1	17	89	10	54	32	2	0	64	1.08
13495619--13495658	16	2.4	18	84	16	59	35	2	0	62	1.09
13501004--13501028	6	4.2	6	100	0	50	84	16	0	0	0.63
13502809--13502847	3	13.0	3	100	0	78	66	0	0	33	0.92
13503530--13503560	2	15.5	2	100	0	62	51	0	0	48	1.00
13503628--13503678	4	13.2	4	76	15	54	74	0	1	23	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13505440--13505468	3	10.0	3	92	7	51	34	0	0	65	0.93
13505441--13505468	14	2.0	14	100	0	56	35	0	0	64	0.94
13506447--13506482	14	2.6	14	86	4	56	77	0	22	0	0.76
13506670--13506803	44	3.1	44	82	1	144	37	15	14	32	1.89
13506776--13507195	48	8.9	48	81	8	448	39	20	11	29	1.87
13506776--13507184	186	2.2	187	80	9	490	39	20	11	28	1.87
13511997--13512072	8	9.0	9	74	18	51	76	1	19	2	0.98
13512005--13512044	4	10.5	4	84	15	50	75	0	25	0	0.81
13511997--13512070	20	4.0	18	75	19	64	75	1	20	2	1.00
13512071--13512095	3	8.3	3	100	0	50	68	0	0	32	0.90
13514551--13514590	18	2.1	18	86	13	53	45	2	0	52	1.14
13515106--13515153	21	2.3	21	77	0	51	22	4	18	54	1.61
13515144--13515193	15	3.4	14	81	8	55	30	2	8	60	1.37
13520230--13520332	5	19.4	5	70	24	61	71	2	3	21	1.15
13520273--13520341	24	2.9	23	78	4	75	75	4	2	17	1.09
13520286--13520323	19	2.0	20	89	5	60	76	0	5	18	0.97
13523548--13523577	2	15.0	2	92	0	51	53	0	0	46	1.00
13524070--13524098	9	3.3	9	95	4	51	41	0	0	58	0.98
13524160--13524195	13	2.7	13	86	4	54	41	0	0	58	0.98
13524317--13524357	21	2.0	21	95	0	73	4	12	0	82	0.81
13524289--13524547	125	2.0	128	87	6	373	34	13	7	44	1.72
13525678--13525736	25	2.4	25	82	5	66	13	13	16	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13526165--13526189	12	2.1	12	100	0	50	64	0	0	36	0.94
13526225--13526258	12	2.8	12	86	0	50	38	0	0	61	0.96
13526887--13526911	2	12.5	2	100	0	50	52	0	0	48	1.00
13528911--13528941	1	31.0	1	100	0	62	0	0	0	100	0.00
13530042--13530097	27	2.1	27	96	0	103	44	3	5	46	1.43
13542416--13542592	94	1.9	94	92	0	300	46	10	9	34	1.69
13542865--13542944	28	2.9	28	71	15	76	22	21	18	37	1.94
13544012--13544048	17	2.2	17	90	9	58	24	0	0	75	0.80
13544550--13544765	30	7.4	27	74	14	121	46	31	1	20	1.59
13544552--13544735	57	3.2	57	80	8	176	47	32	1	19	1.57
13544580--13544727	30	5.1	30	80	5	142	47	33	1	18	1.57
13544715--13544782	14	4.7	14	74	13	57	48	30	1	19	1.58
13544568--13544765	60	3.4	57	74	9	161	47	31	1	19	1.58
13544820--13544889	14	4.9	14	75	14	54	51	32	1	14	1.51
13546558--13546595	20	1.9	19	85	15	51	55	5	0	39	1.23
13546828--13546874	17	2.8	17	81	12	53	29	2	2	65	1.15
13546841--13546874	17	2.0	18	88	11	54	29	2	0	67	1.05
13547457--13547524	35	2.0	34	88	2	100	70	7	0	22	1.11
13547463--13547535	10	7.9	10	79	13	52	68	6	0	24	1.14
13547463--13547565	55	1.9	55	86	4	147	67	4	0	26	1.16
13547650--13547683	18	1.9	18	88	5	52	52	2	0	44	1.16
13547869--13547909	17	2.5	17	92	4	66	36	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13548318--13548364	24	2.0	24	87	4	69	38	17	2	42	1.61
13567915--13568012	48	2.0	48	100	0	196	41	9	30	18	1.81
13574323--13574355	12	2.9	11	95	4	57	12	0	6	81	0.85
13574448--13574498	24	2.1	25	85	3	68	23	1	7	66	1.28
13575347--13575446	44	2.3	43	84	5	121	26	4	11	59	1.49
13576955--13576996	17	2.5	17	100	0	84	50	16	7	26	1.71
13578659--13578840	70	2.6	70	78	0	184	31	12	14	41	1.83
13578938--13579005	27	2.5	29	76	13	81	26	8	20	44	1.81
13579381--13579479	43	2.3	42	77	1	108	26	13	13	47	1.79
13579627--13579670	23	2.0	23	86	4	63	29	4	18	47	1.68
13579640--13579999	45	8.0	45	70	10	162	37	7	12	43	1.70
13579936--13579998	22	2.8	22	76	7	65	41	7	12	38	1.73
13580090--13580184	39	2.5	37	77	8	93	25	12	10	51	1.71
13580057--13580178	19	6.5	19	71	9	88	27	13	9	50	1.70
13580318--13580359	22	1.9	22	90	0	66	30	4	14	50	1.63
13581080--13581147	13	4.8	13	78	21	59	14	5	1	77	1.02
13581080--13581146	29	2.4	28	83	14	84	13	5	1	79	0.99
13581257--13581328	25	3.0	24	78	9	76	33	4	9	52	1.53
13590790--13590817	6	4.7	6	100	0	56	32	0	53	14	1.41
13591666--13591698	17	2.0	17	88	5	50	72	0	0	27	0.85
13594509--13594548	11	3.6	11	89	0	62	50	25	0	25	1.50
13594804--13594908	25	4.2	25	81	7	124	23	34	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13595518--13595557	11	3.6	11	100	0	80	52	27	0	20	1.46
13595813--13595917	25	4.2	25	79	7	115	24	33	6	35	1.82
13596526--13596565	11	3.6	11	96	0	71	52	25	0	22	1.47
13607415--13607935	126	4.1	126	75	8	415	40	11	11	37	1.77
13607524--13607777	137	1.9	137	84	1	348	38	10	12	38	1.77
13610633--13611064	217	2.0	217	98	0	830	28	11	13	46	1.78
13611062--13611114	18	3.1	16	84	15	70	43	22	5	28	1.76
13611062--13611114	17	3.1	17	84	15	72	43	22	5	28	1.76
13609856--13611816	993	2.0	984	82	7	2442	29	12	14	43	1.82
13611859--13612044	7	26.6	7	71	8	128	46	31	0	21	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127