genome.fa.s656.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  86  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16352610--16352847	88	2.7	85	86	10	322	29	4	12	53	1.58
16352835--16352873	19	2.1	19	90	0	60	28	5	12	53	1.60
16352842--16352902	24	2.5	24	85	12	81	31	3	13	52	1.56
16353005--16353066	20	3.1	20	75	15	65	32	6	9	51	1.60
16353116--16353166	24	2.1	24	89	10	77	27	3	17	50	1.63
16356633--16356918	144	2.0	144	79	9	307	39	15	12	32	1.85
16355669--16357281	811	2.0	810	79	7	1758	36	14	13	34	1.86
16357862--16359277	650	2.2	650	86	3	1970	37	14	13	34	1.85
16361321--16362892	801	2.0	794	80	5	1760	35	14	14	35	1.87
16363100--16364276	578	2.0	573	79	7	1267	33	15	15	36	1.89
16368835--16371863	854	3.5	853	78	8	2245	36	14	13	35	1.86
16372326--16372463	57	2.5	55	85	11	174	31	12	4	51	1.59
16372369--16372500	57	2.3	58	81	11	157	35	6	5	53	1.49
16378068--16378412	144	2.4	143	77	8	358	36	12	15	35	1.86
16378540--16385026	863	7.6	857	75	8	4653	36	15	13	35	1.86
16386597--16386821	110	2.0	112	86	5	314	36	16	12	35	1.86
16386844--16386919	35	2.1	36	87	2	109	46	3	13	36	1.61
16386720--16387015	162	1.8	163	84	3	409	36	14	12	35	1.85
16387035--16387228	63	3.1	63	70	14	157	38	13	10	37	1.79
16386880--16387330	126	3.6	124	78	9	434	37	15	12	34	1.85
16390282--16390559	144	1.9	143	83	5	355	35	16	13	33	1.88
16390296--16390621	144	2.3	143	78	6	325	37	15	13	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16405302--16405485	43	4.3	43	78	8	119	42	13	14	29	1.84
16405347--16405489	43	3.4	42	82	6	171	41	13	14	29	1.85
16406973--16407079	56	1.9	56	87	7	157	31	10	3	54	1.52
16407100--16407265	55	3.0	57	83	9	202	30	13	3	53	1.57
16407100--16407295	56	3.5	55	82	9	207	32	11	4	52	1.57
16408971--16409053	17	4.9	17	79	5	78	46	9	16	26	1.78
16408979--16409053	34	2.2	34	87	0	105	49	9	16	25	1.75
16409335--16409398	17	3.8	17	78	15	69	43	12	12	31	1.80
16409494--16409549	22	2.5	22	76	2	58	44	8	8	37	1.67
16409686--16409787	22	4.7	21	70	22	68	41	10	7	40	1.69
16409686--16409774	21	4.2	21	74	18	60	42	11	7	38	1.70
16409686--16409777	42	2.1	43	84	11	118	42	10	7	39	1.69
16410938--16410985	8	5.8	8	81	18	62	20	4	0	75	0.97
16410937--16410986	9	5.8	9	77	17	61	20	4	0	76	0.95
16410938--16410986	17	2.8	18	87	9	75	20	4	0	75	0.96
16411882--16411925	23	2.0	23	86	4	63	52	20	2	25	1.58
16414696--16414720	12	2.1	12	100	0	50	68	0	0	32	0.90
16414835--16414966	59	2.2	59	78	6	160	34	8	6	50	1.57
16414940--16414974	13	2.6	13	95	4	61	48	0	2	48	1.16
16414973--16415117	54	2.7	53	79	13	161	30	11	4	53	1.58
16414979--16415134	53	2.9	53	79	6	136	30	12	4	53	1.58
16430091--16430203	37	3.2	37	77	12	146	33	5	17	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16430108--16430221	32	3.4	32	78	11	129	30	7	19	42	1.80
16430091--16430221	69	1.9	69	93	0	226	32	6	17	42	1.76
16435169--16435220	22	2.4	21	87	6	68	73	3	7	15	1.21
16435190--16435227	17	2.1	18	85	9	51	73	2	13	10	1.19
16446729--16449061	865	2.7	864	88	2	3214	36	15	12	34	1.85
16461679--16461712	18	1.9	18	88	5	52	79	2	11	5	1.02
16462390--16462441	6	8.2	6	81	10	50	75	1	23	0	0.91
16462388--16462428	20	2.0	20	85	0	55	78	0	21	0	0.76
16462387--16462432	17	2.8	17	83	3	58	78	0	21	0	0.76
16462393--16462446	26	2.1	26	82	6	65	72	1	24	1	1.05
16462733--16462953	35	6.3	35	77	6	180	19	19	9	52	1.73
16462733--16462953	70	3.2	69	76	4	228	19	19	9	52	1.73
16463395--16463456	22	2.7	23	83	13	76	77	17	1	3	0.98
16463417--16463460	14	3.2	13	81	15	52	81	15	0	2	0.78
16463415--16463473	17	3.3	18	76	11	59	77	16	0	5	0.93
16463397--16463465	23	3.0	23	83	14	72	79	14	1	4	0.95
16463395--16463457	21	2.9	21	78	21	67	77	17	1	3	0.97
16463396--16463486	12	6.7	13	71	22	55	78	16	1	4	0.98
16463398--16463486	18	4.5	20	74	17	64	77	16	1	4	0.99
16464802--16464964	55	3.0	55	77	12	156	27	15	11	45	1.80
16464913--16465013	49	2.1	48	83	9	125	25	20	11	41	1.87
16465357--16465386	15	2.0	15	100	0	60	60	20	6	13	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16473928--16473966	19	2.0	21	90	10	64	69	2	7	20	1.26
16476086--16476127	17	2.6	16	88	7	66	45	0	4	50	1.23
16476091--16476125	17	2.1	17	100	0	70	48	0	5	45	1.26
16477686--16477723	17	2.2	17	90	0	58	71	2	0	26	1.00
16477827--16477879	21	2.5	20	77	14	54	52	33	1	11	1.48
16479678--16479712	12	2.6	14	86	13	56	82	8	8	0	0.83
16479680--16479712	13	2.4	14	90	5	50	84	6	9	0	0.76
16486595--16486681	22	4.0	22	75	11	88	31	18	16	34	1.93
16486748--16486821	22	3.4	21	76	10	69	31	21	14	32	1.94
16486539--16486928	153	2.5	154	83	4	477	25	20	16	37	1.93
16486811--16487037	110	2.1	110	86	1	312	22	19	18	39	1.92
16487004--16487062	22	2.6	22	83	2	73	27	16	18	37	1.93
16486894--16487205	132	2.4	132	83	6	382	25	18	16	39	1.92
16487143--16487227	22	3.9	22	80	9	84	30	24	15	29	1.95
16487237--16487345	37	2.9	37	78	5	103	12	20	18	48	1.80
16487722--16487777	23	2.5	22	83	11	69	35	42	7	14	1.73
16488880--16488948	20	3.5	20	80	5	86	65	5	1	27	1.24
16489058--16489132	21	3.4	21	70	23	57	53	32	1	13	1.48
16491593--16491627	18	1.9	18	88	11	54	71	14	11	2	1.25
16492138--16492162	8	3.1	8	100	0	50	36	0	0	64	0.94
16492138--16492171	17	2.1	16	88	5	50	38	0	0	61	0.96
16492936--16492993	29	2.1	27	81	12	64	31	1	3	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16496590--16496654	18	3.6	18	77	4	60	33	29	6	30	1.82
16497904--16497949	3	15.3	3	100	0	92	67	0	0	32	0.91
16497952--16497988	16	2.4	16	95	4	67	56	0	5	37	1.22
16498302--16498356	12	4.4	12	82	8	56	50	18	9	21	1.74
16498308--16498356	26	1.9	25	83	4	62	51	18	8	22	1.72
16501760--16501818	26	2.3	26	80	8	68	44	0	0	55	0.99
16502952--16503014	29	2.1	30	82	5	74	26	7	1	63	1.31
16512062--16512099	3	12.7	3	100	0	76	68	0	0	31	0.90
16512991--16513094	55	1.9	55	82	4	129	20	7	7	64	1.44
16514070--16514097	10	2.8	10	100	0	56	21	14	0	64	1.29
16514162--16514207	3	15.3	3	100	0	92	67	0	0	32	0.91
16514443--16514515	38	1.9	38	85	0	101	43	8	10	36	1.70
16516592--16516898	102	3.0	102	85	3	384	42	8	9	39	1.68
16518038--16518084	17	2.7	17	83	9	51	29	23	2	44	1.65
16520040--16520069	3	10.0	3	100	0	60	66	0	0	33	0.92
16520086--16520163	6	11.8	6	76	15	66	62	3	2	30	1.26
16520086--16520169	20	4.2	19	76	8	78	64	3	2	29	1.23
16520079--16520179	7	14.6	7	78	13	75	66	3	1	27	1.20
16520227--16520280	15	3.6	14	79	16	56	66	1	1	29	1.12
16521316--16521356	20	2.0	20	100	0	82	75	14	0	9	1.04
16521914--16522119	61	3.3	62	78	14	194	26	18	14	40	1.88
16522297--16522517	62	3.6	61	78	3	205	32	15	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16522656--16522814	65	2.5	61	77	7	165	36	11	15	36	1.84
16522656--16522958	63	4.8	61	72	11	209	33	13	15	37	1.87
16524259--16524308	13	3.7	13	79	10	64	48	14	8	30	1.72
16524240--16524308	28	2.5	28	88	4	95	47	18	5	27	1.71
16527324--16527447	64	1.9	64	93	3	214	53	5	22	18	1.65
16528865--16529021	84	1.9	83	80	7	183	31	15	16	36	1.90
16530249--16530535	104	2.8	104	83	4	366	41	10	11	35	1.76
16530249--16530559	103	3.0	102	82	5	376	41	10	11	36	1.75
16534676--16534719	7	6.6	7	79	10	56	84	0	13	2	0.73
16534676--16534723	12	3.8	13	84	10	55	83	0	14	2	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127