genome.fa.s656.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  35  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7189649--7189677	2	14.5	2	100	0	58	51	0	0	48	1.00
7194887--7194914	2	14.0	2	100	0	56	50	0	0	50	1.00
7195120--7195149	16	1.9	16	93	6	53	50	20	20	10	1.76
7196393--7196441	11	4.3	11	84	7	62	10	6	8	75	1.18
7196393--7196441	12	4.2	12	80	19	59	10	6	8	75	1.18
7196393--7196441	23	2.1	23	92	7	82	10	6	8	75	1.18
7207835--7207874	19	2.1	19	90	0	62	25	5	12	57	1.55
7207992--7208045	2	27.0	2	100	0	108	50	0	50	0	1.00
7209157--7209188	11	3.1	11	82	17	50	25	6	0	68	1.12
7216351--7216443	6	15.8	6	81	10	61	22	2	6	68	1.23
7216380--7216442	7	9.4	7	79	5	60	23	1	3	71	1.09
7217062--7217138	17	4.5	17	76	20	72	32	6	9	51	1.59
7217169--7217281	24	4.9	24	75	14	96	32	3	7	55	1.46
7217108--7217277	71	2.5	64	83	12	200	32	2	8	55	1.45
7217110--7217288	44	4.0	44	74	20	156	31	3	9	55	1.48
7217251--7217392	32	4.5	32	80	8	184	27	7	11	53	1.64
7217283--7217374	20	4.6	20	65	17	55	28	7	9	54	1.60
7217456--7217517	24	2.6	24	87	7	90	32	3	11	53	1.53
7217446--7217487	19	2.2	19	91	0	66	28	4	11	54	1.57
7217446--7217516	19	3.4	18	71	26	52	30	4	11	53	1.55
7217580--7217693	60	1.9	58	84	7	149	29	5	14	50	1.64
7217673--7217712	18	2.4	17	87	8	55	40	5	7	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217673--7217719	18	2.9	16	79	14	51	38	4	6	51	1.47
7217665--7217753	20	4.8	20	73	22	61	37	4	8	49	1.55
7217764--7217819	24	2.3	24	79	11	62	33	5	16	44	1.70
7218804--7218844	21	2.0	21	90	0	64	26	9	4	58	1.50
7218915--7218945	15	2.1	14	94	5	53	54	12	3	29	1.53
7222661--7222693	11	2.8	12	86	13	50	18	9	6	66	1.40
7223878--7223907	15	2.0	15	93	0	51	30	0	10	60	1.30
7225097--7225240	43	3.4	43	83	5	186	33	11	13	42	1.79
7225490--7225577	6	14.2	6	83	2	77	27	2	5	64	1.28
7226267--7226435	21	7.6	21	68	16	90	34	3	7	55	1.45
7226287--7226391	47	2.3	47	86	6	144	35	1	7	55	1.40
7226267--7226428	24	7.0	24	70	15	119	33	3	7	54	1.46
7226267--7226449	71	2.7	67	81	9	205	33	3	7	55	1.44
7226412--7226496	32	2.7	32	87	1	127	25	3	10	60	1.46
7226595--7226619	3	8.3	3	100	0	50	32	0	0	68	0.90
7226638--7226685	25	2.0	24	87	4	69	35	4	10	50	1.56
7226843--7226902	18	3.6	16	76	14	59	40	5	6	48	1.51
7226812--7226920	36	3.1	36	73	12	91	38	3	8	49	1.50
7226850--7226920	18	3.8	19	81	10	85	39	4	7	49	1.49
7226904--7226945	13	3.1	13	80	19	50	33	9	14	42	1.78
7239699--7239733	17	2.1	16	89	5	52	22	0	14	62	1.31
7246645--7247210	128	4.4	129	79	7	585	38	7	8	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7246645--7247210	130	4.4	131	80	5	582	38	7	8	45	1.62
7246645--7247200	260	2.1	258	83	5	676	38	7	8	45	1.62
7251877--7251911	17	2.1	17	89	10	54	51	11	0	37	1.38
7252190--7252261	28	2.7	25	75	21	74	55	0	2	41	1.14
7252189--7252269	33	2.5	33	84	6	103	55	0	2	41	1.13
7252965--7252992	2	14.0	2	100	0	56	50	0	0	50	1.00
7253958--7253994	10	3.5	10	89	10	56	0	32	18	48	1.49
7253963--7254000	6	6.7	6	85	11	53	2	31	18	47	1.62
7256655--7256692	18	2.2	16	90	9	58	89	10	0	0	0.49
7256655--7256693	11	3.4	12	86	10	55	87	12	0	0	0.55
7260336--7260375	8	4.8	8	82	11	53	72	5	0	22	1.04
7260519--7260562	21	2.0	22	82	4	54	40	2	4	52	1.34
7261076--7261149	29	2.5	28	82	10	87	41	0	0	58	0.98
7261237--7261286	21	2.4	21	82	0	64	64	0	2	34	1.05
7262374--7262447	25	3.0	25	75	16	73	47	2	0	50	1.15
7262374--7262430	24	2.3	25	85	14	75	49	1	0	49	1.11
7263571--7263632	26	2.6	24	78	14	65	40	1	4	53	1.32
7263580--7263630	26	2.0	26	88	0	75	39	1	3	54	1.30
7264293--7264317	2	12.5	2	100	0	50	48	0	0	52	1.00
7267955--7268384	177	2.4	176	82	5	503	28	10	19	42	1.84
7270619--7271288	333	2.0	335	86	4	933	43	10	5	41	1.61
7272177--7272233	28	2.1	28	87	6	82	38	0	7	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7273007--7273114	32	3.4	32	82	5	148	37	2	9	50	1.49
7273007--7273128	32	3.9	32	77	4	131	36	3	8	51	1.48
7274023--7274052	15	1.9	16	93	6	53	56	0	0	43	0.99
7277244--7277278	6	5.8	6	100	0	70	0	0	14	85	0.59
7277611--7277650	18	2.2	18	86	0	53	52	10	5	32	1.56
7283928--7283966	8	4.9	8	80	0	51	10	0	7	82	0.86
7284232--7284277	20	2.3	20	92	0	74	26	15	34	23	1.94
7284868--7285265	105	3.8	104	84	4	523	35	16	13	34	1.88
7285339--7285399	22	2.8	21	80	7	68	18	11	29	40	1.85
7285702--7285757	26	2.2	26	80	6	60	35	12	17	33	1.88
7285903--7285927	7	3.6	7	100	0	50	0	0	12	88	0.53
7285923--7286089	80	2.1	80	82	2	201	32	10	14	42	1.80
7290873--7290974	42	2.4	42	86	3	134	18	29	5	46	1.73
7300613--7300652	21	1.9	21	84	0	53	25	15	0	60	1.35
7305919--7305953	18	2.0	18	88	5	54	2	20	0	77	0.90
7307053--7307100	25	1.9	25	83	8	62	12	4	8	75	1.18
7308006--7308213	40	5.2	40	77	6	197	35	9	18	36	1.84
7308016--7308213	80	2.4	81	84	4	247	36	9	19	35	1.83
7308016--7308253	81	3.0	81	81	5	189	35	10	18	36	1.84
7309820--7309879	9	6.6	9	75	11	50	3	11	3	81	0.93
7310260--7310414	33	4.7	33	68	19	90	4	21	3	70	1.19
7310292--7310335	11	3.8	11	79	8	52	2	20	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7326033--7326088	25	2.3	24	90	9	87	53	16	8	21	1.69
7326033--7326080	25	1.9	25	100	0	96	52	16	8	22	1.71
7327877--7328298	210	2.0	210	99	0	835	43	12	13	30	1.80
7328459--7328487	4	7.2	4	100	0	58	51	24	24	0	1.48
7328583--7328613	2	15.5	2	100	0	62	48	0	0	51	1.00
7331156--7331205	24	2.1	24	92	0	82	52	8	18	22	1.71
7333677--7333759	31	2.7	31	80	14	91	46	8	8	36	1.64
7333846--7333887	21	2.0	21	86	4	59	45	23	11	19	1.83
7335083--7335114	2	16.0	2	100	0	64	50	0	0	50	1.00
7336181--7336213	16	2.2	15	89	10	50	75	0	0	24	0.80
7337085--7337138	19	2.7	20	78	18	67	50	1	3	44	1.30
7337385--7337422	9	4.0	9	90	10	58	42	2	0	55	1.14
7339993--7340053	28	2.1	28	87	6	86	36	1	0	62	1.05
7346427--7346456	11	2.6	11	94	5	51	6	13	0	80	0.91
7348291--7348331	16	2.6	16	92	0	64	56	4	17	21	1.60
7356411--7356441	12	2.7	11	90	9	53	64	0	0	35	0.94
7356727--7356765	2	19.5	2	83	0	51	51	0	2	46	1.14
7357168--7357303	72	1.9	72	93	0	236	41	20	7	30	1.80
7358808--7358844	2	18.5	2	94	0	65	51	0	0	48	1.00
7359934--7360050	58	2.0	57	82	8	139	45	7	1	45	1.42
7360608--7360693	44	2.0	44	95	0	154	31	9	13	45	1.76
7360608--7360677	22	3.2	22	64	22	56	30	10	14	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7362519--7362561	4	10.5	4	95	5	77	76	0	0	23	0.78
7362518--7362561	21	2.1	21	100	0	88	77	0	0	22	0.77
7364123--7364333	103	2.0	103	91	0	341	36	18	9	36	1.84
7365683--7365717	16	2.2	16	100	0	70	65	0	0	34	0.93
7366074--7366103	12	2.5	12	88	0	51	60	0	0	40	0.97
7366324--7366366	13	3.2	13	87	12	61	23	2	2	72	1.08
7366325--7366364	6	6.2	6	83	16	53	20	2	2	75	1.04
7366325--7366364	19	2.0	20	90	4	64	20	2	2	75	1.04
7371000--7371064	24	2.9	21	80	15	60	53	0	10	35	1.36
7371001--7371064	21	2.9	21	81	11	67	54	0	9	35	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127