genome.fa.s656.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  8  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869962--1869999	12	3.1	12	88	3	58	63	0	0	36	0.95
1871865--1871904	21	2.0	20	90	5	62	50	0	2	47	1.14
1873481--1873529	17	2.8	17	81	9	55	40	0	6	53	1.26
1875379--1875433	21	2.7	20	83	8	65	38	1	9	50	1.45
1875563--1875726	80	2.0	79	86	9	224	43	9	6	39	1.64
1883391--1883432	21	2.0	22	90	4	68	23	2	7	66	1.28
1884311--1884363	21	2.4	23	84	9	74	47	0	0	52	1.00
1884338--1884425	44	2.0	45	82	6	108	53	0	0	46	1.00
1885270--1885324	20	2.8	20	78	13	51	54	1	1	41	1.21
1885300--1885358	13	4.8	13	78	12	54	62	0	1	35	1.05
1885294--1885355	31	2.2	27	83	13	72	61	0	3	35	1.12
1885314--1885364	24	2.0	24	85	7	66	64	0	1	33	1.05
1885300--1885383	27	3.1	27	77	18	77	60	0	1	38	1.04
1888542--1888595	21	2.5	22	82	8	67	61	3	0	35	1.14
1888518--1888595	21	3.9	21	75	13	65	56	2	2	38	1.27
1893046--1893074	8	3.6	8	100	0	58	24	41	0	34	1.55
1894622--1894669	23	2.0	23	88	4	69	54	0	0	45	0.99
1894662--1894716	22	2.5	23	82	5	69	47	0	1	50	1.11
1897336--1897422	38	2.3	38	80	9	106	43	9	4	42	1.57
1925984--1926039	6	10.0	6	74	18	50	64	0	0	35	0.94
1925989--1926049	16	3.8	16	73	18	63	67	0	0	32	0.91
1928119--1928191	29	2.6	29	82	8	89	20	9	13	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928126--1928199	29	2.5	28	78	8	85	22	9	13	54	1.68
1942077--1942131	28	2.0	28	85	0	74	47	0	5	47	1.25
1943324--1943491	21	8.2	20	69	13	83	33	8	5	51	1.57
1943536--1943650	21	5.6	21	76	9	103	60	3	3	32	1.30
1943545--1943646	40	2.5	42	78	9	120	59	2	2	34	1.27
1959190--1959235	22	2.0	24	87	8	69	41	0	0	58	0.98
1959252--1959294	19	2.2	20	84	12	63	67	0	0	32	0.91
1965140--1965168	2	14.5	2	100	0	58	51	0	0	48	1.00
1965324--1965358	2	17.5	2	93	0	61	51	0	0	48	1.00
1969346--1969377	2	16.0	2	100	0	64	50	0	0	50	1.00
1973642--1973737	44	2.2	42	82	12	113	59	3	2	35	1.25
1974892--1975186	61	4.9	58	87	7	387	32	11	7	48	1.68
1974892--1975174	119	2.4	118	87	8	405	33	12	7	47	1.68
1975196--1975259	12	5.2	12	82	14	60	81	1	4	12	0.92
1975210--1975259	18	2.7	18	76	14	57	82	2	4	12	0.90
1975197--1975267	6	11.8	6	71	21	51	80	1	5	12	0.95
1975242--1975317	16	4.6	16	75	12	73	71	3	2	22	1.16
1975306--1975349	14	2.9	15	80	6	54	81	6	0	11	0.86
1975762--1975832	31	2.3	31	83	11	92	25	22	23	28	2.00
1975841--1975896	26	2.2	26	90	6	87	35	17	7	39	1.78
1976264--1976300	14	2.4	17	86	13	53	75	2	5	16	1.10
1976310--1976412	16	6.6	15	68	18	59	65	7	0	27	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1977861--1978005	52	2.8	52	88	4	195	42	8	22	26	1.81
1979848--1979918	3	23.7	3	100	0	142	32	33	0	33	1.58
1981893--1981962	26	2.9	24	81	10	79	65	1	0	32	1.01
1982994--1983023	15	2.0	15	93	0	51	36	13	20	30	1.90
1983548--1983595	22	2.1	23	85	11	64	35	0	4	60	1.16
1988219--1988299	42	1.9	43	84	2	110	58	1	6	34	1.31
1988855--1988900	21	2.2	21	84	7	58	39	4	10	45	1.59
1988854--1988902	22	2.3	22	82	13	66	38	4	10	46	1.57
1991500--1991565	28	2.3	28	84	5	87	68	1	1	28	1.08
1991507--1991563	17	3.8	15	77	13	64	66	1	1	29	1.12
1991504--1991575	22	3.2	22	71	13	58	66	1	1	30	1.08
2001945--2001974	3	10.0	3	100	0	60	0	33	0	66	0.92
2002158--2002200	2	21.5	2	85	0	59	44	2	4	48	1.36
2005970--2006020	26	2.0	26	100	0	102	35	19	7	37	1.81
2008069--2008121	18	3.0	17	84	13	63	66	1	0	32	1.03
2008814--2008863	17	2.9	17	77	11	57	36	0	2	62	1.07
2015672--2016027	58	5.9	59	88	5	493	32	11	7	48	1.69
2015672--2016010	177	1.9	179	89	4	524	32	12	7	47	1.68
2015672--2016027	119	3.0	118	89	6	538	32	11	7	48	1.69
2016037--2016167	11	11.5	11	68	18	54	74	3	3	18	1.13
2016051--2016105	17	3.2	17	82	5	58	80	1	5	12	0.97
2016080--2016155	16	4.6	16	75	12	73	71	3	2	22	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2016037--2016169	16	7.9	16	71	15	56	74	3	3	18	1.12
2016585--2016655	31	2.3	32	83	16	96	26	23	22	26	2.00
2017121--2017162	18	2.3	19	80	12	52	61	7	0	30	1.22
2017133--2017235	16	6.6	15	70	18	68	64	7	0	28	1.21
2018646--2018790	52	2.8	52	87	4	186	42	7	22	27	1.80
2020642--2020670	3	9.7	3	100	0	58	31	34	0	34	1.58
2022623--2022673	22	2.5	21	90	9	79	50	0	0	49	1.00
2022622--2022673	20	2.6	21	85	14	74	51	0	0	48	1.00
2022665--2022737	12	5.8	12	78	9	74	64	1	0	34	1.02
2022690--2022733	21	2.0	23	86	8	65	70	0	0	29	0.88
2023788--2023817	15	2.0	15	100	0	60	40	13	20	26	1.89
2024342--2024389	22	2.1	23	85	11	64	35	0	4	60	1.16
2029033--2029126	45	2.1	46	84	6	120	59	2	5	32	1.32
2029675--2029720	21	2.2	21	84	7	58	39	4	10	45	1.59
2029674--2029722	22	2.3	22	82	13	66	38	4	10	46	1.57
2032317--2032382	28	2.3	28	84	5	87	68	1	1	28	1.08
2032324--2032380	17	3.8	15	77	13	64	66	1	1	29	1.12
2032321--2032392	22	3.2	22	71	13	58	66	1	1	30	1.08
2033147--2033176	2	15.0	2	100	0	60	0	0	50	50	1.00
2035790--2035815	2	13.0	2	100	0	52	50	0	0	50	1.00
2036995--2037066	6	11.2	6	78	14	56	20	2	2	73	1.08
2038304--2038375	15	4.9	15	71	19	62	23	2	1	72	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2038464--2038565	21	4.8	21	75	7	80	31	4	2	60	1.32
2038471--2038553	41	2.0	43	88	9	127	28	4	3	62	1.32
2038471--2038566	42	2.3	41	85	8	122	31	5	3	60	1.34
2039292--2039403	10	10.7	10	74	9	62	19	2	1	75	1.01
2039346--2039400	28	2.0	27	86	10	76	16	5	0	78	0.93
2039422--2039761	60	5.8	57	78	13	323	45	6	12	35	1.68
2039422--2039761	120	2.9	120	83	8	430	45	6	12	35	1.68
2044420--2044458	2	19.5	2	100	0	78	48	0	0	51	1.00
2044585--2044618	10	3.4	10	87	0	50	61	0	29	8	1.26
2044586--2044614	15	1.9	15	100	0	58	62	0	27	10	1.28
2046895--2046919	7	3.6	7	100	0	50	88	0	0	12	0.53
2048236--2048273	19	2.0	19	100	0	76	52	10	10	26	1.68
2048239--2048284	19	2.5	19	89	3	67	54	8	15	21	1.68
2051155--2051207	18	3.0	17	84	13	63	66	1	0	32	1.03
2054090--2054143	18	3.1	17	81	7	63	64	1	0	33	1.04
2060168--2060217	25	2.1	25	82	10	61	4	16	6	74	1.17
2063027--2063167	71	2.0	70	97	1	264	17	7	15	59	1.58
2063044--2063155	36	3.2	36	67	22	101	16	5	16	61	1.51
2066390--2066429	21	2.0	21	95	5	73	35	22	12	30	1.91
2066552--2066588	3	12.3	3	100	0	74	67	32	0	0	0.91
2066588--2066619	3	10.7	3	93	0	55	62	3	0	34	1.11
2067165--2067230	34	1.9	34	84	0	87	33	16	10	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2067500--2067543	21	2.1	21	95	0	79	31	22	15	29	1.95
2074403--2074437	18	2.0	17	94	5	61	62	0	0	37	0.95
2078486--2078545	24	2.4	25	83	8	70	50	0	0	50	1.00
2084767--2084792	12	2.2	12	100	0	52	61	7	0	30	1.24
2107421--2107457	14	2.8	13	88	8	56	54	2	0	43	1.14
2110019--2110333	144	2.2	144	88	0	450	33	20	17	27	1.95
2113321--2113795	235	2.0	235	94	1	826	24	24	17	33	1.96
2116157--2116217	25	2.5	24	81	7	61	45	1	0	52	1.10
2116286--2116342	23	2.4	25	82	11	66	50	1	1	45	1.22
2117352--2117393	22	1.9	22	90	0	66	42	2	0	54	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127