genome.fa.s656.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  13  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008343--3008480	74	1.9	73	82	7	172	52	3	7	36	1.46
3008391--3008574	57	3.0	61	80	13	175	50	5	5	38	1.50
3013117--3013163	24	2.0	24	83	8	60	36	6	2	55	1.37
3013513--3013556	13	3.3	13	84	15	54	6	6	2	84	0.86
3013715--3013820	53	2.0	53	94	0	185	33	11	9	46	1.72
3014675--3014727	26	2.1	25	89	3	79	15	3	1	79	0.96
3017807--3017929	63	2.0	63	87	6	178	31	18	25	24	1.98
3018305--3018339	6	5.8	6	100	0	70	0	34	17	48	1.47
3020523--3020569	24	2.0	23	87	4	67	44	2	0	53	1.12
3022400--3022441	17	2.5	17	88	0	66	38	7	14	40	1.73
3025126--3025151	12	2.2	12	100	0	52	7	26	23	42	1.81
3026535--3026564	2	15.0	2	100	0	60	0	50	0	50	1.00
3032056--3032095	15	2.7	15	88	3	55	20	2	5	72	1.15
3043784--3043928	74	2.0	74	95	0	263	38	22	6	32	1.80
3051578--3051674	30	3.3	27	84	15	113	49	2	0	48	1.12
3052518--3052568	23	2.2	23	80	10	59	35	3	0	60	1.15
3059377--3059429	22	2.5	21	76	11	54	56	1	0	41	1.10
3059852--3059914	26	2.4	27	78	7	67	55	7	4	31	1.50
3060041--3060071	11	2.8	11	95	0	53	64	6	9	19	1.45
3065397--3065439	21	2.0	21	100	0	86	51	4	32	11	1.59
3066195--3066235	14	2.7	15	78	21	50	7	17	12	63	1.50
3077476--3077512	2	18.5	2	100	0	74	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3085489--3085590	29	3.5	28	70	17	75	43	1	0	53	1.18
3085482--3085543	22	3.0	21	72	23	58	45	1	0	53	1.10
3093647--3093688	22	1.9	22	85	9	59	59	0	2	38	1.10
3093770--3093850	31	2.6	31	80	5	94	48	3	8	39	1.52
3097227--3097254	2	14.0	2	100	0	56	50	0	0	50	1.00
3097313--3097354	13	3.2	13	90	6	59	71	7	0	21	1.09
3099153--3099309	66	2.4	66	93	0	269	15	16	38	28	1.90
3100452--3100519	32	2.1	32	86	0	91	52	1	0	45	1.09
3100945--3101014	27	2.5	28	88	6	97	48	0	0	51	1.00
3100945--3101029	28	3.0	28	81	13	95	50	0	0	49	1.00
3100974--3101029	21	2.6	21	85	2	67	51	0	0	48	1.00
3104397--3104436	16	2.4	16	87	4	53	25	20	17	37	1.94
3104703--3104919	45	5.1	45	77	9	197	23	12	19	44	1.85
3104698--3104919	88	2.6	85	84	5	272	23	12	18	44	1.84
3104698--3104923	43	5.3	42	79	8	226	24	12	18	43	1.85
3104942--3105061	44	2.8	44	87	3	163	27	11	15	45	1.80
3104910--3105110	45	4.6	44	80	5	192	28	11	14	44	1.80
3104910--3105108	86	2.3	87	77	8	197	29	11	14	45	1.79
3106318--3106356	15	2.6	15	84	8	53	51	5	5	38	1.46
3106197--3106465	137	2.0	133	84	9	350	51	4	7	36	1.49
3106353--3106509	61	2.6	62	80	10	180	53	4	10	31	1.54
3106201--3106497	137	2.2	137	78	16	325	52	4	7	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3108286--3108361	39	1.9	39	91	0	125	34	5	14	46	1.67
3110048--3110077	12	2.6	11	90	10	51	80	0	0	20	0.72
3110901--3110964	17	3.7	17	72	4	56	32	4	3	59	1.34
3112165--3112194	3	10.0	3	100	0	60	66	0	0	33	0.92
3118144--3118380	121	1.9	125	80	7	279	36	5	10	47	1.61
3119151--3119192	14	3.1	14	86	3	59	52	2	2	42	1.27
3121079--3121202	59	2.1	59	98	1	241	45	14	17	22	1.85
3130335--3130359	11	2.3	11	100	0	50	24	8	28	40	1.83
3130694--3130745	25	2.1	25	88	0	77	57	0	5	36	1.23
3134922--3134975	23	2.5	22	75	6	56	48	1	3	46	1.30
3138093--3138177	42	2.0	42	93	0	143	38	9	23	28	1.86
3140599--3140653	18	3.0	19	73	7	60	56	0	1	41	1.10
3150882--3150910	13	2.1	14	93	6	51	55	0	6	37	1.27
3150989--3151059	27	2.8	25	79	10	81	32	1	0	66	1.01
3151038--3151075	10	3.9	10	83	16	53	26	0	0	73	0.83
3152451--3152537	43	2.0	43	90	0	138	54	11	11	22	1.68
3174443--3174476	16	2.1	16	88	0	50	41	23	11	23	1.87
3175556--3175613	24	2.3	25	82	11	66	53	0	0	46	1.00
3175899--3175961	3	22.0	3	72	15	53	0	34	3	61	1.12
3181866--3181896	2	15.5	2	100	0	62	51	0	48	0	1.00
3220007--3220053	21	2.2	21	92	7	78	51	0	0	48	1.00
3220639--3220679	21	2.0	20	85	4	55	41	0	9	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3224055--3224114	21	2.7	23	87	12	97	28	8	8	55	1.59
3224973--3225011	2	19.5	2	100	0	78	48	0	0	51	1.00
3226131--3228076	516	3.8	514	85	2	2537	39	12	10	37	1.77
3227647--3228487	428	2.0	428	85	2	1163	38	12	10	39	1.77
3227136--3229021	944	2.0	939	85	4	2528	38	11	11	38	1.77
3230026--3230063	20	1.9	20	89	10	60	60	7	2	28	1.38
3228075--3231312	515	6.4	515	82	4	3875	39	10	11	38	1.76
3232219--3232252	17	2.0	17	88	0	50	47	0	2	50	1.16
3232176--3232401	58	3.9	57	85	7	287	43	3	11	41	1.59
3236121--3236168	15	3.1	15	77	11	53	66	2	2	29	1.14
3236167--3236238	11	6.5	11	76	13	60	51	1	1	45	1.18
3236163--3236238	33	2.3	32	84	4	98	53	1	1	43	1.17
3238174--3238214	14	3.2	13	86	13	59	31	2	0	65	1.05
3238176--3238214	6	6.3	6	88	8	53	30	2	0	66	1.05
3238719--3238780	18	3.3	18	78	13	63	48	0	3	48	1.17
3241215--3241244	11	2.7	11	94	0	51	53	10	3	33	1.51
3241437--3241543	54	2.0	54	98	0	205	41	11	17	29	1.84
3244618--3245356	368	2.0	368	90	1	1178	36	14	13	34	1.86
3246706--3246778	28	2.5	28	86	8	94	73	2	2	20	1.08
3246706--3246756	17	3.0	17	75	11	59	76	0	1	21	0.88
3246706--3246812	20	5.2	18	73	21	52	74	2	4	17	1.11
3248703--3248750	14	3.3	14	77	11	60	20	4	25	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3248641--3248758	30	4.0	30	78	6	116	26	1	26	45	1.63
3248765--3248798	14	2.4	14	90	0	50	20	0	32	47	1.51
3248819--3248924	15	6.8	16	79	5	110	18	0	30	50	1.54
3248819--3248924	31	3.4	31	77	6	115	18	0	30	50	1.54
3250375--3250532	80	2.0	79	96	1	289	33	3	4	58	1.36
3250574--3250635	3	20.7	3	100	0	124	67	0	0	32	0.91
3254047--3254102	24	2.3	24	75	6	60	46	0	7	46	1.30
3254803--3254869	18	3.6	18	76	13	64	47	0	2	49	1.16
3257477--3257530	22	2.4	23	78	9	58	50	5	0	44	1.25
3257777--3257813	15	2.4	16	90	4	58	70	2	0	27	1.01
3257884--3257954	11	6.7	11	71	9	58	53	4	1	40	1.29
3258869--3259499	322	2.0	320	93	1	1093	29	16	21	32	1.95
3262389--3262540	75	2.0	75	94	0	268	19	11	19	48	1.79
3263255--3263285	11	2.8	11	95	0	53	58	3	0	38	1.15
3265240--3265286	16	2.7	18	77	12	53	17	6	0	76	0.98
3265517--3266070	43	12.7	44	78	4	424	45	16	14	23	1.84
3265527--3265981	174	2.6	174	78	4	423	46	16	13	23	1.82
3265517--3266070	131	4.2	129	75	7	492	45	16	14	23	1.84
3267087--3267114	10	2.8	10	100	0	56	7	7	0	85	0.73
3272244--3272302	20	3.0	21	82	7	70	37	1	8	52	1.42
3284350--3284405	24	2.4	24	77	11	62	44	0	7	48	1.30
3285093--3285135	18	2.4	18	84	3	61	60	6	0	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3291101--3291133	15	2.3	15	89	5	50	33	0	0	66	0.92
3291132--3291186	18	3.1	17	84	7	65	49	0	3	47	1.19
3291138--3291189	18	2.9	18	85	5	70	53	0	1	44	1.11
3291544--3291588	23	1.9	23	82	13	56	48	4	2	44	1.35
3295944--3295976	16	2.1	16	100	0	66	24	6	30	39	1.79
3296774--3296823	25	2.0	26	85	11	70	46	4	4	46	1.40
3297078--3297154	32	2.4	32	80	8	77	49	6	1	42	1.36
3299513--3299557	3	15.0	3	100	0	90	66	0	0	33	0.92
3299998--3300080	41	2.0	42	81	9	98	50	9	2	37	1.48
3300133--3300190	29	2.0	29	100	0	116	6	31	10	51	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127