genome.fa.s656.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  66  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12862104--12862519	22	19.0	22	71	9	197	36	8	5	49	1.57
12862455--12862515	11	5.5	11	72	0	59	36	6	3	54	1.43
12862919--12862964	22	2.1	22	83	0	56	28	2	17	52	1.56
12862947--12863023	22	3.5	22	82	5	93	41	7	7	42	1.62
12863067--12863201	44	3.1	42	79	14	127	32	9	3	54	1.51
12863101--12863179	41	1.9	41	85	14	110	31	6	1	60	1.29
12863241--12863407	22	7.7	22	71	6	101	37	8	5	47	1.59
12863351--12863421	22	3.2	22	76	7	72	38	9	2	49	1.51
12863452--12863503	11	4.7	11	73	0	50	34	5	3	55	1.42
12863448--12863509	22	2.8	22	82	0	79	33	8	6	51	1.57
12863676--12863753	22	3.6	22	79	5	79	37	10	5	47	1.60
12865748--12865808	17	4.0	16	88	12	85	49	1	0	49	1.10
12865749--12865824	15	5.0	15	76	16	59	52	1	0	46	1.08
12866988--12867021	17	2.0	17	88	0	50	58	5	8	26	1.51
12867289--12867325	2	19.0	2	88	5	58	51	0	2	45	1.15
12868167--12868198	2	16.0	2	100	0	64	50	0	0	50	1.00
12869219--12869301	12	6.8	13	78	14	72	34	2	0	62	1.08
12869298--12869341	20	2.2	20	96	4	81	47	0	0	52	1.00
12874707--12874751	19	2.3	19	88	3	63	55	2	0	42	1.12
12875028--12875131	43	2.4	44	83	8	131	50	1	0	47	1.19
12880312--12880363	26	2.0	26	96	0	95	19	25	3	51	1.63
12881996--12882040	18	2.5	17	82	7	54	68	0	2	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12886521--12886550	2	15.0	2	100	0	60	50	0	0	50	1.00
12890841--12890891	25	2.0	25	92	0	84	41	11	21	25	1.87
12899267--12899299	17	1.9	17	93	0	57	48	6	21	24	1.72
12906614--12906682	35	1.9	37	82	11	90	56	2	0	40	1.14
12908935--12908989	26	2.1	26	86	0	74	25	5	10	58	1.53
12912077--12912108	16	1.9	16	93	6	55	90	0	6	3	0.53
12912586--12912638	24	2.3	23	83	6	63	58	0	1	39	1.09
12918344--12918368	2	12.5	2	100	0	50	52	48	0	0	1.00
12919233--12919395	81	2.0	80	96	1	299	31	16	19	32	1.94
12920244--12920287	22	2.0	22	86	0	61	54	9	9	27	1.62
12920663--12920705	22	2.0	22	90	0	68	55	6	6	30	1.53
12920154--12920998	418	2.0	414	93	0	1447	46	13	14	25	1.81
12925421--12925463	21	2.0	21	81	4	50	34	25	20	18	1.96
12927239--12927307	14	4.8	14	75	8	50	57	0	2	39	1.13
12927692--12927750	12	5.1	11	76	15	57	28	0	5	66	1.13
12927721--12927750	15	1.9	15	93	6	51	26	0	3	70	1.03
12927694--12927749	19	2.9	19	76	12	60	26	0	5	67	1.11
12928793--12929066	45	6.1	45	72	11	204	36	8	15	39	1.77
12929263--12929346	18	4.8	18	80	11	95	36	4	15	42	1.68
12929263--12929356	18	5.4	17	77	11	84	36	6	13	43	1.70
12929363--12929399	18	2.1	18	94	0	65	35	8	5	51	1.55
12929440--12929507	17	3.9	17	77	11	75	38	10	10	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12929901--12930058	43	3.7	42	83	3	174	29	9	16	44	1.79
12930374--12930449	6	13.2	6	72	10	61	31	1	6	60	1.30
12931158--12931221	24	2.6	25	79	13	71	10	10	0	78	0.98
12931159--12931214	29	1.9	29	85	7	78	8	10	0	80	0.91
12931301--12931353	22	2.3	23	80	3	63	35	3	9	50	1.53
12931391--12931429	19	2.1	19	85	0	51	33	7	7	51	1.59
12933343--12933385	10	4.3	10	82	5	52	2	27	0	69	1.00
12933339--12933385	15	3.1	14	88	11	67	2	27	0	70	0.99
12934254--12934294	7	6.0	7	78	16	50	19	0	0	80	0.71
12934255--12934294	12	3.0	13	82	17	55	20	0	0	80	0.72
12934252--12934291	20	2.0	20	90	0	62	20	0	0	80	0.72
12934388--12934434	14	3.3	15	85	14	64	74	0	14	10	1.07
12934381--12934427	22	2.2	21	88	3	67	76	0	10	12	1.02
12934399--12934441	14	3.1	14	83	12	54	69	0	18	11	1.17
12934381--12934427	7	6.6	7	92	4	67	76	0	10	12	1.02
12937010--12937041	14	2.3	14	94	0	55	28	3	15	53	1.57
12937970--12938366	197	2.0	197	97	0	740	45	9	5	40	1.58
12939520--12939563	22	2.0	23	86	4	63	70	13	6	9	1.33
12939819--12939860	14	2.7	15	79	17	50	76	0	4	19	0.96
12940298--12940338	13	3.1	13	89	3	64	73	0	0	26	0.84
12948886--12948978	44	2.1	44	85	0	123	51	10	11	25	1.71
12953096--12953143	20	2.6	18	75	15	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953904--12953937	9	3.8	9	88	0	50	44	0	0	55	0.99
12953904--12953961	18	3.2	18	73	11	55	46	0	0	53	1.00
12960307--12960376	21	3.5	20	90	9	115	40	0	35	24	1.56
12971162--12971199	17	2.2	18	85	4	51	78	5	0	15	0.91
12971457--12971491	6	5.8	6	100	0	70	14	17	0	68	1.21
12972875--12972961	36	2.4	37	80	3	97	25	4	36	33	1.76
12973345--12973395	22	2.3	21	80	6	57	25	3	11	58	1.50
12976882--12976935	27	2.0	27	81	0	63	35	5	24	35	1.79
12978312--12978468	79	2.0	79	96	0	287	29	16	9	43	1.80
12980180--12980257	32	2.4	32	86	0	102	30	10	5	53	1.56
12980809--12980956	42	3.5	42	80	8	167	54	12	6	25	1.62
12981096--12981132	12	3.1	12	92	0	65	32	24	0	43	1.55
12986333--12986366	17	1.9	18	88	5	52	58	11	14	14	1.63
12988999--12989029	11	2.8	11	100	0	62	58	6	6	29	1.48
12989312--12989344	17	1.9	17	93	0	57	78	0	0	21	0.75
12989312--12989346	9	4.0	9	85	7	54	77	0	0	22	0.78
12991326--12991355	15	2.0	15	93	0	51	36	6	33	23	1.81
12994289--12994318	10	3.1	10	95	4	53	36	0	0	63	0.95
12994291--12994320	9	3.2	9	95	4	51	36	0	0	63	0.95
12995360--12995394	16	2.2	16	89	0	52	60	5	17	17	1.55
13003253--13003328	35	2.2	35	85	0	107	26	22	6	44	1.77
13007653--13007690	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13009690--13009722	10	3.1	11	86	8	50	78	0	0	21	0.75
13010199--13010232	15	2.3	15	100	0	68	5	8	61	23	1.47
13013388--13013451	30	2.1	30	100	0	128	39	3	3	54	1.32
13015948--13016002	20	2.7	21	76	18	62	70	1	7	20	1.20
13020649--13020911	144	1.8	142	84	4	359	42	9	13	33	1.78
13021503--13021714	107	2.0	107	83	3	266	50	13	16	19	1.77
13021726--13021838	36	3.1	36	76	7	95	45	15	21	18	1.86
13021829--13021939	35	3.1	35	83	10	113	56	14	12	16	1.67
13022034--13022184	70	2.1	70	80	10	166	47	14	21	16	1.82
13022136--13022213	36	2.2	35	84	4	102	50	10	20	19	1.76
13022033--13022237	35	5.8	35	71	11	132	46	15	21	16	1.84
13022444--13022599	36	4.4	35	75	5	118	46	13	21	18	1.83
13022657--13022811	36	4.3	36	77	4	125	51	13	18	16	1.76
13022429--13022811	72	5.4	72	69	9	217	49	13	19	17	1.79
13036470--13036746	134	2.1	133	95	1	500	19	14	16	49	1.79
13042665--13042723	27	2.2	27	85	8	77	50	1	1	45	1.21
13044470--13044502	16	1.9	18	88	11	52	39	6	27	27	1.80
13056052--13056103	17	3.1	16	80	5	59	55	3	0	40	1.18
13059400--13059434	16	2.1	17	94	5	63	0	68	2	28	1.04
13059834--13059869	15	2.3	17	81	18	51	19	0	5	75	1.00
13061046--13061087	3	14.0	3	100	0	84	33	0	0	66	0.92
13062013--13062291	135	2.1	136	85	3	384	49	7	6	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13062304--13062348	20	2.3	20	84	3	56	73	2	6	17	1.15
13062295--13062336	14	3.1	14	89	6	68	71	0	9	19	1.13
13062296--13062358	6	9.8	6	73	13	54	73	3	4	19	1.15
13073316--13073398	33	2.5	33	74	18	82	33	18	13	34	1.89
13073457--13073586	36	3.6	36	68	7	95	25	15	20	39	1.91
13073472--13073607	71	1.9	72	82	7	170	25	13	21	39	1.90
13073790--13073870	36	2.3	35	83	8	110	32	16	13	38	1.87
13075175--13075210	12	2.8	13	87	12	56	16	0	0	83	0.65
13075163--13075211	18	2.6	19	87	12	66	14	2	0	83	0.73
13075183--13075221	20	2.0	20	84	0	51	17	0	5	76	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127