genome.fa.s656.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  47  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9313974--9314100	32	4.0	32	77	13	127	37	19	5	37	1.75
9320567--9320613	17	2.8	17	83	6	60	70	0	2	27	0.99
9322661--9322693	15	2.1	16	88	5	50	36	0	0	63	0.95
9324838--9324974	68	2.0	68	100	0	274	41	26	7	24	1.81
9325256--9325340	19	4.2	19	74	12	71	37	7	5	49	1.54
9325273--9325340	23	3.1	23	77	10	63	36	7	5	50	1.55
9325250--9325340	20	4.3	22	76	13	77	38	6	5	49	1.52
9327896--9328041	26	6.0	24	69	13	93	25	8	17	48	1.75
9328095--9328150	12	4.5	12	80	6	58	14	8	19	57	1.63
9328085--9328150	25	2.7	26	83	6	75	13	7	19	59	1.58
9328300--9328351	3	16.7	3	88	7	77	28	1	0	69	0.99
9329484--9329543	26	2.3	27	83	13	72	0	15	11	73	1.10
9329482--9329551	27	2.4	28	75	20	72	0	14	11	74	1.08
9329485--9329549	25	2.5	26	83	11	73	0	13	12	73	1.09
9329951--9330053	13	7.3	14	71	21	56	27	0	1	69	1.05
9329975--9330042	23	3.1	21	78	18	68	29	1	0	69	0.98
9329963--9330055	36	2.6	34	83	13	107	27	1	1	69	1.02
9329969--9330040	8	8.5	8	71	17	56	30	1	0	68	0.99
9329989--9330042	23	2.2	23	87	9	72	27	1	0	70	0.98
9329961--9330036	34	2.3	34	84	10	97	30	1	0	68	0.98
9330007--9330053	23	2.0	23	87	0	67	25	0	2	72	0.96
9330781--9330925	33	4.4	33	76	3	130	26	13	19	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9330782--9330925	66	2.2	66	83	2	182	26	12	19	41	1.87
9331539--9331583	22	2.0	22	86	0	63	24	22	20	33	1.97
9331701--9331782	34	2.4	33	82	8	85	31	13	8	46	1.73
9332248--9332284	17	2.1	18	90	5	58	18	5	0	75	0.99
9333052--9333076	9	2.8	9	100	0	50	8	0	0	92	0.40
9333147--9333184	17	2.2	17	86	9	51	7	5	2	84	0.86
9338623--9338658	18	2.0	19	89	10	58	25	5	0	69	1.10
9338887--9338939	19	2.8	19	80	8	54	28	13	18	39	1.88
9339405--9339432	3	9.3	3	100	0	56	67	0	0	32	0.91
9345930--9345962	12	2.7	12	95	4	57	0	9	12	78	0.95
9345920--9345962	13	3.2	13	83	12	52	0	13	11	74	1.07
9346379--9346445	16	4.1	15	81	14	71	26	0	1	71	0.94
9346365--9346443	18	4.4	17	78	13	79	27	0	1	70	0.95
9346365--9346444	31	2.5	32	80	13	94	27	0	1	71	0.94
9346370--9346438	24	2.8	26	77	14	76	28	0	1	69	0.97
9346402--9346445	15	2.9	15	83	6	54	27	0	0	72	0.85
9348059--9348099	21	2.0	21	100	0	82	29	4	14	51	1.63
9348647--9348727	40	2.0	40	97	0	153	30	2	23	43	1.67
9348977--9349026	23	2.1	24	88	3	75	46	12	10	32	1.74
9350561--9350663	48	2.1	48	85	3	136	28	23	7	40	1.82
9350595--9350698	48	2.2	48	80	3	120	32	19	7	40	1.80
9358190--9358375	100	1.9	100	80	6	225	33	5	9	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9361066--9361121	23	2.4	23	82	5	69	48	3	0	48	1.19
9361255--9361330	37	2.1	37	89	0	116	48	3	5	42	1.44
9361612--9361866	113	2.3	112	78	2	287	34	8	5	50	1.56
9362020--9362072	26	2.0	26	85	3	70	50	0	1	47	1.12
9362269--9362311	13	3.3	13	87	6	52	72	6	0	20	1.08
9363809--9363894	41	2.1	41	97	0	163	41	16	5	36	1.72
9364195--9364227	1	33.0	1	100	0	66	100	0	0	0	0.00
9364684--9364709	2	13.0	2	100	0	52	0	0	50	50	1.00
9365729--9365763	2	18.0	2	94	5	63	51	0	0	48	1.00
9368022--9368071	22	2.3	22	96	0	91	48	2	12	38	1.52
9368441--9368491	20	2.7	20	93	6	88	49	0	3	47	1.20
9369721--9369759	20	1.9	20	84	5	51	66	15	2	15	1.36
9373950--9373981	15	2.1	15	100	0	64	65	0	0	34	0.93
9374961--9375070	53	2.1	53	89	5	168	49	2	2	45	1.30
9376686--9376750	25	2.5	25	76	16	62	29	4	4	61	1.36
9379558--9379593	6	6.0	6	100	0	72	33	0	16	50	1.46
9381928--9381954	14	1.9	14	100	0	54	51	3	7	37	1.48
9382519--9382547	10	2.9	10	100	0	58	58	0	0	41	0.98
9382732--9382784	21	2.5	21	93	3	88	56	5	1	35	1.34
9383470--9383516	23	2.0	23	84	8	60	53	4	2	40	1.32
9384071--9384110	20	2.0	20	100	0	80	35	10	15	40	1.80
9384074--9384122	20	2.4	20	89	3	71	36	6	12	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9385183--9385220	2	19.0	2	100	0	76	50	0	0	50	1.00
9391268--9391302	15	2.4	15	90	4	54	48	2	0	48	1.16
9391669--9391715	24	2.2	20	85	14	58	46	2	2	48	1.25
9392912--9392961	21	2.3	22	80	10	59	20	4	0	76	0.95
9392912--9392961	10	4.6	11	74	20	52	20	4	0	76	0.95
9394000--9394051	26	2.0	26	84	0	68	32	1	42	23	1.65
9398505--9398605	53	1.9	53	93	0	175	15	34	6	42	1.74
9404862--9404912	26	1.9	26	88	4	75	64	1	1	31	1.15
9406241--9406299	18	3.4	17	80	13	57	77	15	1	5	1.01
9406722--9406788	13	5.2	12	73	23	57	79	14	0	5	0.92
9415866--9415909	9	4.8	9	84	15	63	88	0	9	2	0.59
9415866--9415908	19	2.4	17	92	7	68	88	0	9	2	0.60
9416683--9417616	45	20.1	47	86	6	1275	27	11	25	35	1.91
9416688--9417614	93	10.0	93	89	5	1398	27	11	25	35	1.91
9417783--9417828	20	2.3	20	85	7	58	56	8	10	23	1.61
9417825--9417864	14	2.8	15	78	21	50	70	12	2	15	1.28
9417834--9417894	24	2.9	21	77	17	63	73	13	3	9	1.20
9424469--9424503	15	2.4	15	90	4	54	48	2	0	48	1.16
9424870--9424918	24	2.0	24	84	7	64	46	2	2	48	1.25
9425820--9425852	2	16.5	2	93	0	57	48	0	3	48	1.17
9432089--9432143	27	2.0	27	85	3	74	49	1	1	47	1.23
9432168--9432218	27	1.9	26	84	11	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9432134--9432402	136	2.0	133	89	5	396	53	2	2	41	1.27
9432244--9432310	30	2.2	30	86	5	91	65	2	4	26	1.26
9432321--9432406	24	3.5	23	68	22	59	48	1	2	47	1.22
9438185--9438229	22	2.0	22	100	0	90	31	24	4	40	1.75
9449934--9449964	12	2.5	13	89	10	55	0	19	6	74	1.03
9455203--9455246	22	2.0	22	95	0	79	43	13	11	31	1.80
9459102--9459145	22	2.0	22	95	0	79	43	13	11	31	1.80
9459329--9459410	43	1.9	43	94	0	146	20	3	43	31	1.69
9460016--9460050	6	5.8	6	100	0	70	17	0	17	65	1.27
9468787--9468862	34	2.2	34	86	4	100	35	6	7	50	1.58
9469574--9469624	26	2.0	26	92	0	84	27	5	1	64	1.27
9473186--9473252	22	3.0	22	84	0	89	38	8	7	44	1.64
9479105--9479133	12	2.4	12	100	0	58	58	0	17	24	1.38
9486086--9486129	22	2.0	22	90	0	70	34	9	13	43	1.76
9486985--9487511	269	2.0	264	83	5	668	35	16	17	30	1.92
9492037--9492092	9	6.6	9	75	19	57	50	0	1	48	1.11
9492029--9492087	17	3.6	16	84	11	75	50	0	1	47	1.11
9492352--9492398	4	11.5	4	80	17	53	21	2	4	72	1.12
9492350--9492380	15	2.1	15	100	0	62	25	0	0	74	0.82
9492965--9493020	23	2.4	23	87	0	85	42	8	10	37	1.71
9492965--9493034	23	3.0	22	75	19	63	41	10	11	37	1.75
9493207--9493247	11	3.7	11	83	0	55	63	4	7	24	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9493534--9493578	24	1.9	24	86	4	65	62	8	0	28	1.25
9497778--9497849	31	2.3	31	82	2	81	51	20	9	18	1.74
9503744--9503782	2	20.0	2	86	5	53	43	0	0	56	0.99
9503958--9503989	2	16.0	2	93	0	55	53	0	46	0	1.00
9503958--9503995	12	3.2	12	92	0	58	52	0	44	2	1.14
9506744--9507289	273	2.0	272	86	4	755	34	16	18	30	1.93
9510673--9510724	17	3.1	17	81	15	63	50	0	1	48	1.12
9511654--9511696	14	3.0	14	83	12	52	60	2	2	34	1.22
9511660--9511707	15	3.3	15	79	5	53	58	4	4	33	1.36
9512283--9512312	14	2.1	14	93	0	51	13	10	0	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127