genome.fa.s656.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  87  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16534675--16534723	19	2.6	17	78	15	53	83	0	14	2	0.73
16535094--16535120	13	2.1	13	100	0	54	85	0	14	0	0.61
16535083--16535146	11	5.6	11	78	10	67	82	1	15	0	0.74
16535083--16535141	21	2.8	21	87	5	75	83	1	15	0	0.74
16535083--16535144	12	5.3	12	76	9	58	83	1	14	0	0.71
16535396--16535420	11	2.3	11	100	0	50	84	0	16	0	0.63
16536256--16536303	9	5.3	9	76	18	55	27	16	12	43	1.84
16536256--16536311	18	3.1	18	89	0	85	26	16	14	42	1.86
16536619--16536673	22	2.4	23	81	6	67	25	21	20	32	1.97
16536636--16536694	22	2.7	22	84	5	66	25	23	22	28	1.99
16537094--16537185	35	2.4	37	78	14	107	27	8	18	45	1.78
16537113--16537184	35	2.0	36	89	2	110	25	9	22	43	1.83
16537380--16537464	4	20.0	4	71	20	57	21	3	4	70	1.21
16537521--16537560	17	2.4	17	87	8	55	22	0	7	70	1.12
16537507--16537550	14	3.0	14	80	9	52	18	2	11	68	1.30
16538416--16538449	17	2.0	17	94	0	59	17	26	29	26	1.98
16538637--16538706	3	23.3	3	88	0	95	61	4	1	32	1.24
16538725--16538839	60	1.9	59	89	1	176	43	8	11	36	1.72
16542941--16543112	56	3.1	55	76	9	172	48	4	10	37	1.57
16543096--16543195	50	2.0	50	81	13	116	52	7	8	33	1.58
16543027--16543306	54	5.2	54	71	13	202	48	5	8	37	1.56
16542974--16543306	55	6.2	54	70	15	172	48	4	8	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16544185--16544238	25	2.1	26	93	3	92	37	16	16	29	1.91
16548415--16548464	8	6.2	8	95	4	84	86	0	2	12	0.67
16548595--16548710	25	4.6	25	78	8	103	31	10	6	50	1.63
16549420--16549459	16	2.5	16	100	0	80	40	0	5	55	1.22
16551424--16551728	145	2.1	143	81	5	346	39	10	15	35	1.81
16552227--16552967	69	10.9	68	86	4	896	38	18	10	32	1.85
16552227--16552927	205	3.4	204	85	2	931	38	18	10	32	1.85
16553682--16553742	26	2.3	26	80	5	61	36	14	18	31	1.91
16554124--16554209	33	2.6	33	87	1	111	30	18	20	30	1.97
16554090--16554336	97	2.5	100	85	3	315	29	18	19	32	1.96
16554803--16554851	22	2.2	23	85	10	75	10	8	0	81	0.87
16554815--16554849	18	1.9	18	88	11	54	5	8	0	85	0.73
16555192--16555284	34	2.8	32	80	14	91	4	16	3	76	1.08
16555195--16555284	35	2.7	32	83	15	94	4	15	3	76	1.07
16564802--16565078	145	1.9	144	86	3	396	41	11	14	32	1.81
16566229--16566347	38	3.2	37	77	7	107	37	21	10	31	1.86
16566252--16566338	35	2.4	37	78	5	97	35	25	8	31	1.85
16566252--16566418	37	4.5	37	76	4	122	32	24	10	32	1.90
16566494--16566623	69	1.9	69	88	6	201	33	9	15	42	1.79
16567851--16567900	23	2.1	23	85	3	64	76	6	12	6	1.16
16568899--16568923	3	8.3	3	100	0	50	32	0	0	68	0.90
16569038--16569079	17	2.4	18	80	4	50	73	0	11	14	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16569157--16569231	26	3.0	25	75	15	73	68	1	4	26	1.16
16570171--16570211	20	2.0	20	100	0	82	51	9	0	39	1.35
16575084--16575146	25	2.5	25	89	0	90	20	34	9	34	1.85
16575764--16575816	16	3.2	16	80	15	54	77	1	18	1	0.96
16575761--16575825	18	3.7	18	76	15	66	75	1	21	1	0.97
16576894--16576953	21	2.8	21	84	2	66	31	25	18	25	1.97
16576894--16577000	22	4.9	22	81	6	110	31	23	19	25	1.98
16577214--16577326	33	3.4	33	82	4	147	34	16	19	29	1.94
16577208--16577646	32	13.6	31	73	13	214	36	19	16	28	1.93
16577210--16577608	66	6.2	64	72	12	163	36	19	16	28	1.93
16577667--16577819	32	4.7	32	80	7	175	38	22	13	25	1.91
16577555--16577761	113	1.8	113	86	0	297	36	21	16	25	1.94
16577457--16577945	211	2.3	211	94	2	843	36	21	16	25	1.93
16577700--16577857	65	2.4	66	82	7	180	39	20	13	26	1.90
16577924--16577995	34	2.1	35	84	2	92	38	20	13	26	1.90
16578023--16578127	32	3.3	32	73	11	90	33	20	19	26	1.96
16578195--16578310	33	3.6	32	76	12	103	32	19	17	30	1.95
16578563--16578616	8	7.3	7	78	17	56	81	11	0	7	0.87
16578932--16578963	8	4.0	8	95	0	55	53	0	0	46	1.00
16578932--16579009	14	5.0	16	70	22	58	58	0	1	39	1.06
16578948--16579013	7	9.9	7	79	9	75	63	0	1	34	1.04
16578955--16579005	12	4.0	12	78	14	57	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16578964--16579013	20	2.4	21	90	3	75	66	0	2	32	1.03
16578948--16579010	32	1.9	34	90	6	103	61	0	1	36	1.05
16580042--16580099	22	2.6	22	78	8	55	50	13	0	36	1.42
16584183--16584588	142	2.8	143	78	5	406	42	12	14	31	1.82
16585112--16585188	37	2.1	37	87	0	109	32	19	15	32	1.93
16585447--16585764	34	9.5	33	78	6	124	31	13	20	33	1.92
16585484--16586041	34	16.5	34	77	7	334	32	13	19	34	1.90
16585611--16586041	67	6.4	68	74	7	225	34	13	18	34	1.89
16585621--16585938	134	2.4	135	80	5	324	34	14	17	33	1.90
16585614--16586041	33	12.7	34	72	8	185	34	13	17	34	1.89
16587856--16587898	12	3.6	12	80	0	50	2	9	4	83	0.87
16587852--16587899	24	2.0	24	91	0	78	2	8	4	85	0.80
16591869--16591931	30	2.1	30	96	0	117	23	11	30	34	1.90
16594197--16594230	10	3.3	10	87	4	50	26	2	2	67	1.19
16596132--16596592	145	3.2	143	82	7	493	41	11	13	33	1.80
16596132--16596682	145	3.8	145	80	7	473	41	11	13	33	1.80
16600346--16600377	3	10.7	3	93	0	55	34	0	3	62	1.11
16602858--16602889	16	2.0	16	93	0	55	21	12	9	56	1.64
16607937--16607982	15	3.0	15	84	12	58	73	2	0	23	0.94
16607939--16607981	22	2.0	22	85	0	59	74	2	0	23	0.93
16609762--16609813	24	2.2	24	85	0	68	63	21	1	13	1.39
16609804--16609853	12	4.1	12	79	5	55	64	16	0	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16613136--16613166	14	2.2	14	100	0	62	41	6	32	19	1.77
16621928--16621956	2	14.5	2	100	0	58	48	0	0	51	1.00
16623204--16623610	144	2.8	141	77	9	421	44	13	11	31	1.79
16624301--16624469	93	1.8	92	87	3	250	37	14	12	36	1.84
16624196--16624574	197	1.9	198	84	3	505	35	15	14	34	1.88
16624396--16624641	105	2.4	104	83	5	300	32	17	14	35	1.90
16624611--16624695	28	3.0	28	98	0	161	24	27	10	37	1.88
16624507--16624808	161	1.9	160	92	0	505	29	19	14	36	1.92
16624667--16624856	105	1.8	105	85	4	267	30	16	17	34	1.93
16625428--16625556	55	2.4	55	82	7	156	38	11	20	29	1.88
16625521--16625583	21	2.6	25	73	26	71	38	11	26	23	1.89
16625530--16625578	21	2.3	21	100	0	98	38	10	28	22	1.87
16626016--16626055	17	2.3	18	84	16	57	10	15	0	75	1.05
16628236--16628266	16	1.9	16	93	0	53	9	3	6	80	0.99
16648987--16649017	16	1.9	16	100	0	62	25	19	12	41	1.87
16649413--16649471	3	19.7	3	100	0	118	32	0	0	67	0.91
16650957--16651425	142	3.3	144	79	9	467	32	11	13	42	1.81
16650957--16651506	144	3.9	140	77	9	461	32	11	13	43	1.79
16653632--16653666	3	11.7	3	93	0	61	71	0	0	28	0.86
16654775--16654820	23	2.0	24	82	4	58	39	0	6	54	1.26
16659218--16659321	52	2.0	53	86	1	147	29	28	23	18	1.97
16659420--16659566	75	1.9	76	84	4	199	40	19	19	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16669012--16669064	28	1.9	27	88	11	81	52	11	3	32	1.55
16670685--16670733	16	3.1	16	85	2	64	34	0	0	65	0.93
16670687--16670728	20	2.2	19	87	12	59	26	0	0	73	0.83
16670696--16670739	20	2.2	20	84	4	54	38	0	0	61	0.96
16679967--16680023	28	2.1	28	83	3	71	40	7	12	40	1.70
16682946--16683383	73	6.1	70	73	9	242	44	7	9	37	1.66
16682940--16683324	73	5.3	71	75	10	282	45	8	8	37	1.65
16682940--16683368	146	3.0	142	80	8	436	45	7	9	37	1.67
16683514--16683597	37	2.3	37	85	4	107	47	4	2	45	1.36
16684398--16684498	20	4.8	20	71	17	71	53	10	4	30	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127