genome.fa.s656.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  67  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13075298--13076112	404	2.0	404	96	0	1506	50	5	7	36	1.55
13076051--13076329	135	2.1	134	85	7	370	48	5	7	37	1.56
13076351--13076386	3	13.0	3	88	11	51	72	0	0	27	0.85
13076316--13076382	20	3.5	18	77	18	57	71	1	5	20	1.15
13076765--13076793	3	9.7	3	100	0	58	65	0	0	34	0.93
13077796--13077820	12	2.1	12	100	0	50	56	0	0	44	0.99
13082717--13082823	33	2.9	38	59	13	89	23	17	20	38	1.93
13086622--13086663	20	2.2	18	87	8	57	69	2	2	26	1.13
13086641--13086671	16	1.9	16	93	0	53	70	3	0	25	1.02
13086643--13086726	36	2.4	36	84	6	109	60	3	2	33	1.27
13086676--13086707	15	2.1	16	94	5	57	65	6	0	28	1.16
13086724--13086773	19	2.6	20	78	9	59	60	8	0	32	1.26
13086733--13086784	19	2.8	19	80	11	54	59	7	0	32	1.26
13086814--13086851	17	2.2	17	86	9	51	55	2	0	42	1.14
13087040--13087084	20	2.2	20	88	7	65	73	0	0	26	0.84
13087092--13087133	18	2.2	20	87	12	61	57	2	4	35	1.33
13087198--13087237	19	2.1	19	95	4	71	35	0	5	60	1.19
13087215--13087280	35	1.9	34	81	9	80	30	3	3	63	1.24
13087350--13087399	19	2.8	18	71	11	50	22	2	2	74	1.03
13087352--13087421	27	2.7	26	86	8	90	25	2	1	70	1.10
13087424--13087496	21	3.7	19	77	13	58	34	2	4	58	1.31
13087409--13087502	30	3.1	30	78	7	84	40	2	3	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13087541--13087596	28	2.0	28	85	0	76	37	12	10	39	1.78
13099197--13099364	64	2.7	62	76	3	158	30	9	8	50	1.66
13099224--13099373	62	2.4	61	77	9	142	33	8	8	50	1.63
13099373--13099407	18	1.9	18	88	11	54	62	5	0	31	1.18
13099866--13099957	34	3.2	26	68	22	67	41	4	2	52	1.33
13099828--13100016	61	3.0	61	82	7	202	41	4	4	48	1.45
13102691--13102721	6	5.0	6	96	4	53	83	0	0	16	0.64
13106065--13106106	11	3.8	11	84	6	50	21	2	28	47	1.63
13106064--13106106	22	2.0	22	86	9	61	23	2	27	46	1.64
13106131--13106287	52	3.0	52	87	1	217	39	8	26	26	1.84
13106772--13106856	31	2.7	31	88	0	125	30	22	24	22	1.99
13106884--13106936	25	2.1	25	86	13	74	33	7	37	20	1.81
13107177--13107219	22	2.0	22	90	9	70	23	0	27	48	1.51
13107178--13107211	11	3.1	11	91	0	59	20	0	29	50	1.49
13107244--13107400	52	3.0	52	88	1	226	38	8	26	26	1.84
13116385--13116409	2	12.5	2	100	0	50	0	48	0	52	1.00
13123815--13123859	10	4.5	10	91	8	74	26	2	0	71	0.98
13123821--13123891	17	4.1	17	78	9	63	26	2	0	70	1.01
13123824--13123875	9	5.7	9	79	9	52	26	1	0	71	0.97
13123862--13123917	17	3.4	17	78	11	62	23	8	0	67	1.18
13124452--13124494	11	3.8	11	85	14	61	13	4	0	81	0.84
13125346--13125387	21	2.0	22	90	4	68	9	9	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13125342--13125390	11	4.5	11	79	5	55	8	8	0	83	0.81
13131170--13131212	16	2.6	16	89	10	61	44	0	4	51	1.22
13131371--13131424	25	2.2	25	83	6	65	20	1	5	72	1.14
13132250--13132305	7	7.6	7	77	16	51	16	3	1	78	0.97
13132257--13132305	15	3.3	15	91	5	82	16	4	0	79	0.88
13132885--13132952	29	2.3	31	82	12	88	44	0	0	55	0.99
13133568--13133607	16	2.3	18	83	12	57	30	0	2	67	1.04
13133623--13133676	22	2.5	21	80	16	65	51	0	0	48	1.00
13138268--13138305	13	3.0	13	84	7	51	68	0	13	18	1.21
13138813--13138848	2	18.5	2	88	5	56	2	50	0	47	1.15
13143765--13143801	11	3.5	11	78	14	51	59	2	0	37	1.12
13143762--13143829	18	3.8	17	82	9	73	64	2	0	32	1.08
13143693--13143821	49	2.6	49	73	6	118	60	6	1	31	1.31
13143787--13143825	17	2.4	17	86	4	53	69	2	0	28	1.02
13144253--13144309	18	3.1	18	78	14	71	40	0	1	57	1.09
13144265--13144297	9	3.6	9	95	4	57	39	0	3	57	1.14
13144351--13144386	18	2.1	18	89	5	56	33	5	0	61	1.19
13144378--13144416	20	2.0	20	90	5	62	15	0	7	76	0.99
13144465--13144518	9	6.2	8	83	12	63	37	0	3	59	1.15
13144465--13144518	17	3.1	17	86	2	72	37	0	3	59	1.15
13144471--13144529	17	3.4	17	85	4	73	35	0	5	59	1.20
13147684--13147774	44	2.1	44	82	0	110	47	7	8	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13154455--13154485	3	10.3	3	100	0	62	67	0	0	32	0.91
13155134--13155163	15	2.0	15	93	0	51	90	10	0	0	0.47
13155678--13155712	17	2.1	17	89	5	54	11	11	2	74	1.18
13155736--13155765	13	2.3	13	94	0	51	73	10	0	16	1.09
13155798--13155840	18	2.3	19	84	4	52	32	20	9	37	1.85
13156100--13156178	41	1.9	41	84	7	106	35	22	17	24	1.95
13156100--13156508	43	9.7	42	71	11	212	38	19	14	28	1.90
13156526--13156903	197	1.9	196	92	0	630	37	15	10	37	1.82
13164212--13164687	55	8.8	55	71	12	233	27	14	14	44	1.83
13164410--13164515	49	2.2	49	82	0	122	27	16	11	45	1.81
13166463--13167227	383	2.0	379	92	1	1280	37	17	9	35	1.82
13169902--13169955	27	2.0	27	100	0	108	48	18	7	25	1.74
13173492--13173635	64	2.3	63	84	3	182	38	14	11	36	1.82
13177598--13177873	123	2.2	123	80	10	296	37	13	14	34	1.85
13179565--13179597	12	2.6	13	85	9	50	63	3	3	30	1.24
13179627--13179660	7	4.7	7	89	7	50	76	0	2	20	0.92
13179627--13179663	15	2.6	14	86	4	56	75	0	2	21	0.92
13181707--13181734	13	2.2	13	100	0	56	67	0	0	32	0.91
13184989--13185030	4	10.0	4	87	5	57	69	2	4	23	1.20
13185319--13185360	21	2.0	21	90	0	66	19	7	11	61	1.52
13190374--13190412	19	2.1	19	85	0	51	56	0	7	35	1.28
13190344--13190644	22	13.8	22	69	10	98	50	5	7	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13190397--13190558	43	3.7	43	80	4	155	49	4	8	37	1.55
13190464--13190609	65	2.2	64	76	15	140	50	4	9	35	1.54
13190606--13190673	22	3.1	22	85	4	75	52	2	4	39	1.36
13190640--13190682	22	2.0	22	95	0	77	51	0	0	48	1.00
13190826--13190912	22	4.0	23	73	5	65	47	6	9	36	1.62
13191208--13191306	21	4.7	21	75	7	83	52	7	8	32	1.58
13191208--13191259	22	2.4	21	87	3	68	50	11	9	28	1.70
13191212--13191306	43	2.2	42	78	9	102	53	6	8	31	1.56
13191315--13191371	21	2.7	21	83	0	69	43	10	15	29	1.80
13205578--13205604	2	13.5	2	100	0	54	48	0	0	51	1.00
13208550--13208648	23	4.2	23	69	14	67	56	6	3	34	1.39
13208569--13208615	24	1.9	25	91	4	78	57	4	2	36	1.30
13208555--13208728	73	2.4	70	82	9	208	48	9	6	35	1.60
13208895--13208982	37	2.4	36	73	5	86	56	2	3	37	1.28
13210605--13210666	31	2.0	31	96	0	115	48	8	16	27	1.74
13211821--13211892	25	2.8	26	79	10	78	23	4	9	62	1.43
13213116--13213169	26	2.1	26	96	0	99	22	5	11	61	1.50
13216728--13216781	23	2.2	24	83	6	65	16	1	14	66	1.34
13216789--13216936	59	2.5	57	79	8	172	20	3	20	54	1.59
13217120--13217786	331	2.0	334	89	2	1029	35	3	12	48	1.58
13221851--13221897	3	15.7	3	81	0	58	40	0	27	31	1.57
13224516--13224562	20	2.3	20	85	3	58	38	8	4	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13224639--13224755	20	5.9	20	72	9	87	35	5	7	52	1.52
13224664--13224766	20	5.3	19	74	14	84	33	6	5	53	1.52
13224643--13224766	40	3.2	39	80	8	126	34	6	7	51	1.55
13224664--13224766	39	2.6	40	82	10	131	33	6	5	53	1.52
13226286--13226327	18	2.3	19	84	8	52	21	23	9	45	1.81
13226671--13226810	38	3.7	38	87	1	201	30	10	22	36	1.88
13226671--13226812	76	1.9	76	89	2	223	29	10	23	36	1.88
13226825--13226922	37	2.6	38	90	3	144	28	11	19	40	1.86
13226810--13226939	37	3.4	38	80	5	120	32	10	19	38	1.85
13227150--13227226	6	12.3	6	74	8	55	31	2	3	62	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127