genome.fa.s656.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  42  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8334283--8334550	88	3.0	88	96	0	482	43	1	6	48	1.35
8334910--8334949	21	1.9	21	90	10	64	52	0	7	40	1.30
8335018--8335100	29	2.9	28	75	12	87	32	4	1	61	1.25
8335070--8335113	21	2.1	21	86	0	61	40	4	2	52	1.34
8335191--8335221	15	2.1	15	94	5	55	45	9	0	45	1.36
8335392--8335451	30	2.0	30	83	6	77	56	0	3	40	1.16
8336375--8336540	7	24.1	7	66	15	62	47	32	0	19	1.50
8336402--8336500	20	4.8	20	72	10	74	51	29	0	19	1.47
8336413--8336507	28	3.2	28	70	21	84	48	32	0	18	1.49
8336394--8336563	62	2.7	62	81	10	213	47	31	0	20	1.54
8336496--8336560	28	2.3	29	81	7	80	41	35	1	21	1.63
8336375--8336591	14	15.7	14	67	14	53	47	30	0	21	1.54
8336519--8336577	21	2.8	21	78	0	64	47	28	1	22	1.61
8339338--8339435	34	2.9	34	78	6	117	34	4	10	51	1.55
8343214--8343253	3	13.3	3	94	0	71	62	0	35	2	1.09
8343522--8343594	37	2.0	37	97	0	137	17	26	12	43	1.84
8346398--8346422	10	2.5	10	100	0	50	92	0	0	8	0.40
8349681--8349709	14	2.0	15	93	6	51	58	0	0	41	0.98
8356331--8356367	18	2.1	18	89	0	56	40	5	5	48	1.49
8362756--8362788	16	2.2	15	89	10	50	18	18	12	51	1.76
8363014--8363220	114	1.8	114	94	0	369	25	10	14	49	1.75
8368058--8368086	14	2.0	15	93	6	51	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8373036--8373070	3	11.7	3	87	0	52	31	28	2	37	1.72
8373033--8373072	9	4.4	9	90	0	53	30	25	2	42	1.68
8373079--8373109	14	2.2	14	94	0	53	70	0	3	25	1.02
8374627--8374660	3	11.3	3	100	0	68	35	0	0	64	0.94
8375443--8375888	152	3.0	149	86	5	548	34	14	15	34	1.89
8375450--8375888	147	3.0	150	86	4	552	34	14	16	34	1.89
8378700--8378737	19	2.0	19	90	10	60	57	21	10	10	1.61
8379066--8379124	31	1.9	29	86	10	82	72	10	0	16	1.10
8379081--8379119	19	2.1	19	85	9	53	69	12	0	17	1.19
8379046--8379144	11	8.9	11	70	16	62	74	8	1	16	1.10
8379074--8379141	31	2.2	31	81	5	75	76	8	0	14	1.01
8381640--8381714	30	2.5	31	78	6	75	25	1	4	69	1.14
8383982--8384017	18	2.0	18	89	10	56	77	0	5	16	0.94
8384529--8384573	16	3.0	14	81	12	54	62	4	0	33	1.15
8387463--8387739	97	2.9	98	79	9	304	54	5	3	36	1.41
8387736--8387768	17	2.1	16	88	11	50	60	0	3	36	1.12
8387878--8388113	92	2.6	92	78	11	234	52	2	4	39	1.36
8387996--8388051	29	1.9	28	82	13	69	50	3	3	42	1.37
8388047--8388082	17	2.2	17	90	5	56	75	0	2	22	0.94
8388042--8388082	17	2.5	16	84	7	55	68	0	4	26	1.10
8391750--8391796	2	23.5	2	91	0	76	44	0	2	53	1.12
8400226--8400629	204	2.0	199	93	2	682	27	8	25	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8406413--8406447	2	17.5	2	93	0	61	0	45	0	54	0.99
8406447--8406472	2	13.0	2	100	0	52	50	0	0	50	1.00
8406472--8406506	2	17.5	2	100	0	70	51	48	0	0	1.00
8409248--8409290	22	2.0	22	85	0	59	62	6	9	20	1.48
8420811--8420852	12	3.6	12	83	3	50	33	0	0	66	0.92
8420812--8420870	30	1.9	32	89	6	95	33	0	0	66	0.92
8420822--8420870	16	3.2	16	74	11	57	34	0	0	65	0.93
8422178--8422214	19	1.9	19	94	0	65	43	10	0	45	1.39
8423421--8423457	19	1.9	19	88	0	56	51	5	0	43	1.24
8423561--8423617	19	2.7	20	73	19	53	47	1	1	49	1.22
8424348--8424430	35	2.5	35	82	9	93	25	3	9	61	1.43
8425958--8426006	25	1.9	25	83	4	62	42	2	6	48	1.39
8425997--8426025	12	2.3	13	94	5	51	58	0	3	37	1.15
8437794--8437821	14	2.0	14	100	0	56	21	7	28	42	1.79
8442292--8442359	18	3.7	18	73	16	59	52	1	0	45	1.09
8442353--8442432	27	2.9	28	77	17	87	58	1	1	38	1.14
8442484--8442642	23	6.2	25	69	22	82	44	1	0	54	1.13
8442452--8442665	75	2.9	76	80	13	213	41	0	0	56	1.12
8443171--8443203	15	2.2	16	89	10	52	54	0	3	42	1.15
8443402--8443428	14	1.9	14	100	0	54	51	3	0	44	1.19
8443704--8443773	36	1.9	36	88	11	108	51	0	0	48	1.00
8444275--8444336	28	2.2	28	85	2	79	14	17	1	66	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8444284--8444350	28	2.6	25	73	17	64	13	19	0	67	1.23
8444445--8444506	27	2.3	27	86	2	81	45	4	0	50	1.23
8453357--8453406	22	2.3	22	85	0	64	44	0	0	56	0.99
8453296--8453399	28	3.7	28	76	8	95	45	0	0	53	1.06
8453480--8453520	21	1.9	22	90	5	66	56	2	0	41	1.13
8458755--8458807	26	2.0	26	85	7	72	50	1	0	47	1.12
8458758--8458813	26	2.2	26	81	9	62	55	3	0	41	1.17
8460900--8460967	34	2.0	34	100	0	136	32	11	8	47	1.71
8463490--8463519	8	3.8	8	90	0	51	40	0	0	60	0.97
8463512--8463557	21	2.1	22	92	4	76	50	0	0	50	1.00
8470725--8470755	14	2.2	14	94	0	53	25	6	22	45	1.76
8472284--8472324	21	2.0	20	85	4	55	36	14	2	46	1.58
8473480--8473795	165	1.9	164	87	4	458	44	9	10	35	1.71
8474134--8474241	36	2.9	37	83	2	119	45	5	18	30	1.72
8474134--8474205	37	1.9	38	91	2	119	45	6	19	27	1.76
8474150--8474353	73	2.8	71	80	11	209	48	5	16	29	1.69
8474157--8474358	36	5.5	37	70	14	134	47	5	17	30	1.70
8474763--8474819	17	3.2	17	80	9	78	38	1	1	57	1.19
8474595--8475018	231	1.8	231	97	0	803	37	9	14	39	1.78
8478883--8478929	23	2.0	23	92	8	78	34	8	12	44	1.73
8479017--8479061	19	2.4	19	81	7	56	57	0	2	40	1.11
8479022--8479086	27	2.3	27	84	12	78	56	1	1	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8479022--8479088	28	2.4	28	82	12	84	56	1	1	40	1.17
8479056--8479139	17	4.8	17	77	20	77	60	4	2	32	1.30
8479250--8479287	20	1.9	20	88	0	58	47	5	2	44	1.39
8479250--8479293	20	2.2	20	83	0	52	54	4	2	38	1.33
8479283--8479333	22	2.3	22	86	10	68	35	0	5	58	1.22
8479302--8479396	28	3.2	29	73	11	77	26	1	4	68	1.14
8479412--8479494	18	4.6	17	78	14	78	30	1	2	66	1.12
8479412--8479494	9	9.1	9	75	11	62	30	1	2	66	1.12
8479412--8479515	10	11.3	9	75	13	88	31	1	2	63	1.20
8480439--8480486	16	3.0	16	93	6	80	37	0	0	62	0.95
8480808--8480832	10	2.5	10	100	0	50	52	20	8	20	1.71
8488227--8488268	21	2.0	21	90	0	66	38	7	9	45	1.64
8488238--8488293	28	2.0	28	89	0	85	32	5	10	51	1.59
8488649--8488678	15	2.0	15	93	0	51	56	0	6	36	1.26
8489286--8489325	2	20.0	2	89	0	62	55	0	0	45	0.99
8490877--8490918	15	2.7	16	85	7	59	50	7	2	40	1.43
8493004--8493035	2	16.0	2	100	0	64	0	50	0	50	1.00
8500153--8500185	16	1.9	18	88	11	52	18	9	6	66	1.40
8509511--8509554	23	1.9	23	95	0	79	20	31	13	34	1.92
8509598--8509630	17	1.9	17	93	0	57	30	18	6	45	1.73
8517809--8517998	51	3.8	50	79	7	197	40	11	7	41	1.69
8518714--8518743	14	2.1	14	93	0	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8518688--8518737	24	2.0	25	84	11	66	58	0	0	42	0.98
8521405--8521457	27	1.9	28	85	11	74	45	0	0	54	0.99
8524271--8524880	311	1.9	314	83	5	786	39	16	15	28	1.89
8533733--8533794	25	2.6	25	84	5	83	22	22	14	40	1.90
8534240--8534394	58	2.7	58	87	2	213	22	28	18	30	1.97
8537781--8537865	43	2.0	43	88	4	127	48	10	18	22	1.79
8539698--8539731	2	17.0	2	100	0	68	50	50	0	0	1.00
8541237--8541283	22	2.0	24	88	8	71	46	0	0	53	1.00
8541312--8541352	9	4.4	10	79	14	52	65	0	0	34	0.93
8543114--8543207	6	16.2	6	86	10	124	17	0	50	32	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127