Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  116  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21960204--21960275
28
2.8
26
83
12
87
59
2
0
37
1.12
21960235--21960311
28
2.8
26
80
9
82
66
1
0
32
1.00
21960213--21960311
33
2.9
34
79
8
103
62
2
0
35
1.07
21960238--21960294
21
2.6
22
88
8
89
64
1
0
33
1.04
21960712--21960794
32
2.6
32
86
1
105
48
0
2
49
1.14
21961586--21961634
18
2.7
18
90
6
73
55
0
0
44
0.99
21961625--21961666
8
5.4
8
81
16
52
66
0
0
33
0.92
21961625--21961685
31
2.0
31
87
6
88
68
0
0
31
0.89
21963338--21963397
29
2.1
31
81
12
83
55
0
0
45
0.99
21963890--21963918
14
2.1
14
100
0
58
20
6
27
44
1.77
21970127--21970162
18
1.9
19
88
5
56
55
11
8
25
1.62
21989845--21989871
2
13.5
2
100
0
54
48
0
0
51
1.00
21999008--21999049
17
2.4
18
88
11
70
80
0
14
4
0.86
22000160--22000220
19
3.1
18
78
17
59
47
6
0
45
1.28
22000160--22000224
21
3.1
21
82
8
71
47
6
0
46
1.27
22000619--22000652
2
17.0
2
87
0
50
44
0
0
55
0.99
22004145--22004174
2
15.0
2
100
0
60
50
0
0
50
1.00
22005129--22005156
2
14.0
2
100
0
56
50
0
0
50
1.00
22010043--22010069
7
3.9
7
100
0
54
85
0
0
14
0.61
22015786--22016303
258
2.0
258
95
0
919
31
13
18
35
1.90
22024489--22024522
2
17.0
2
100
0
68
0
50
0
50
1.00
22034885--22034931
16
2.9
16
78
18
53
44
0
2
53
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22034882--22034934
15
3.5
15
78
14
56
43
0
1
54
1.11
22034876--22034934
15
3.9
14
78
12
55
44
1
1
52
1.21
22034955--22034988
2
17.5
2
87
6
52
55
0
0
44
0.99
22034938--22034984
8
6.2
8
80
11
55
61
0
0
38
0.96
22038147--22038172
2
13.0
2
100
0
52
0
50
0
50
1.00
22055759--22055790
16
2.0
16
93
0
55
43
12
9
34
1.75
22059930--22059970
17
2.5
17
80
7
50
58
0
9
31
1.31
22060607--22060632
4
6.5
4
100
0
52
76
0
0
23
0.78
22061909--22061946
19
2.0
19
89
0
58
44
15
7
31
1.75
22064477--22064501
12
2.1
12
100
0
50
32
0
0
68
0.90
22064505--22064547
16
2.7
16
77
0
50
37
0
2
60
1.10
22064535--22064576
21
2.0
21
95
4
77
54
0
0
45
0.99
22064534--22064582
18
2.6
19
84
15
66
51
0
0
48
1.00
22075797--22075841
15
3.1
14
83
6
54
22
2
15
60
1.46
22077259--22077325
31
2.2
29
84
10
82
34
13
8
43
1.75
22078105--22078175
31
2.3
31
82
4
81
43
15
7
33
1.74
22078534--22078627
30
3.1
30
83
4
100
43
4
2
50
1.33
22080017--22080052
18
1.9
18
88
5
54
19
2
0
77
0.88
22085327--22085367
6
6.8
6
97
0
64
0
26
17
56
1.41
22086716--22086796
8
10.0
8
73
12
67
43
1
0
55
1.07
22086716--22086765
18
2.9
18
82
8
68
46
0
0
54
1.00
22086734--22086797
22
2.7
23
80
11
67
42
1
0
56
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22086857--22086923
21
3.0
20
70
19
53
35
2
0
61
1.12
22088483--22088520
14
2.6
15
88
12
53
55
5
0
39
1.23
22088741--22089007
104
2.6
102
78
11
269
40
6
6
46
1.56
22089253--22089321
26
2.7
26
86
4
86
36
31
10
21
1.87
22090777--22090845
23
3.0
22
79
10
68
39
4
1
55
1.29
22090788--22090852
23
2.8
23
85
0
76
36
6
3
53
1.41
22091242--22091278
13
2.6
15
83
12
51
48
2
0
48
1.15
22092872--22092909
14
2.8
14
92
4
60
81
5
13
0
0.85
22106349--22106383
17
2.0
17
88
5
52
60
0
0
40
0.97
22106410--22106452
19
2.3
19
91
0
68
34
9
9
46
1.68
22106898--22106940
18
2.3
19
88
8
61
46
0
0
53
1.00
22110516--22110551
3
12.0
3
93
0
63
63
0
0
36
0.94
22118181--22118375
97
2.0
97
88
4
286
32
16
19
30
1.94
22123110--22123146
14
2.8
13
88
8
56
54
0
0
45
1.00
22123104--22123146
14
3.1
14
86
6
52
53
0
0
46
1.00
22129534--22129588
28
2.0
28
92
0
92
50
0
7
41
1.30
22138639--22138764
52
2.3
52
79
12
130
53
0
0
46
1.00
22139470--22139556
40
2.2
40
89
0
129
35
20
0
43
1.52
22140226--22140281
23
2.7
20
75
17
60
60
3
1
33
1.24
22146385--22146458
31
2.9
23
73
25
60
54
0
0
45
1.00
22146412--22146461
15
3.3
15
86
5
66
50
0
0
50
1.00
22146400--22146448
9
5.6
9
79
13
57
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22146412--22146491
15
4.9
15
71
23
63
48
0
0
51
1.00
22146535--22146621
8
11.1
8
70
21
60
48
0
0
51
1.00
22146550--22146626
22
3.2
25
80
14
99
50
0
0
49
1.00
22146540--22146630
30
3.0
32
80
16
97
50
0
0
49
1.00
22146536--22146626
48
2.0
42
85
12
119
49
0
0
50
1.00
22146535--22146629
15
6.1
15
75
16
77
49
0
0
50
1.00
22146565--22146637
15
5.3
13
72
24
53
54
0
0
45
0.99
22151220--22151249
2
15.0
2
92
0
51
50
0
3
46
1.18
22166898--22167060
80
2.0
80
91
0
263
34
19
11
35
1.87
22169214--22169266
15
3.6
15
76
20
58
39
35
16
7
1.78
22169381--22169415
18
1.9
18
88
0
52
37
0
8
54
1.31
22169515--22169895
209
1.8
207
80
6
450
42
8
13
35
1.74
22169985--22170362
195
1.9
194
91
2
625
37
11
14
37
1.81
22178480--22178519
20
2.0
20
95
0
71
30
12
0
57
1.36
22187812--22188009
100
2.0
100
98
0
387
31
16
13
38
1.87
22196779--22196840
31
2.0
31
83
0
79
41
1
9
46
1.46
22197276--22197315
3
13.3
3
94
0
71
67
2
0
30
1.04
22202646--22202685
17
2.4
17
83
4
55
75
0
7
17
1.03
22202646--22202692
16
2.9
17
81
9
55
76
0
6
17
0.98
22202656--22202694
17
2.3
17
86
0
51
82
0
2
15
0.79
22202762--22202840
40
1.9
41
82
12
99
40
1
2
55
1.21
22203766--22203794
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22204142--22204171
10
3.1
10
95
4
53
63
0
0
36
0.95
22204552--22204586
13
2.7
13
95
0
61
11
28
5
54
1.59
22205664--22205711
24
2.0
24
84
15
64
52
4
0
43
1.20
22205850--22205881
6
5.7
6
89
10
50
68
0
0
31
0.90
22205850--22205881
11
2.8
12
86
13
50
68
0
0
31
0.90
22206179--22206215
2
18.5
2
94
0
65
48
0
0
51
1.00
22209435--22209465
5
6.2
5
100
0
62
80
0
19
0
0.71
22210169--22210224
28
2.0
28
92
0
94
19
12
12
55
1.68
22210169--22210236
28
2.5
27
83
6
77
19
11
13
55
1.67
22212435--22212478
22
2.0
22
95
0
79
43
13
11
31
1.80
22212438--22212490
22
2.4
22
84
6
54
49
9
11
30
1.70
22217285--22217320
19
1.9
18
88
5
54
2
22
0
75
0.94
22218830--22219080
46
5.4
46
85
1
322
38
14
8
38
1.77
22218904--22219152
117
2.2
117
88
2
371
40
13
8
37
1.75
22218830--22219106
138
2.0
138
84
6
364
39
13
8
37
1.76
22219042--22219153
46
2.4
46
86
0
161
42
13
7
36
1.72
22220396--22220440
18
2.6
17
80
16
56
6
20
0
73
1.05
22220427--22220475
14
3.6
14
73
15
57
12
10
0
77
0.99
22220429--22220476
13
3.6
13
77
5
60
10
12
0
77
1.00
22220414--22220479
28
2.4
27
84
5
87
12
12
0
75
1.04
22224293--22224318
5
5.2
5
100
0
52
80
0
0
19
0.71
22225519--22225556
19
2.0
19
90
10
60
68
10
5
15
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22225552--22225607
26
2.2
25
84
15
71
73
5
5
16
1.21
22227178--22227230
26
2.1
25
82
10
63
52
11
16
18
1.73
22227438--22227480
22
2.0
22
95
0
77
48
6
6
37
1.57
22237038--22237071
15
2.2
16
89
5
52
11
35
5
47
1.65
22237847--22237998
76
2.0
76
82
0
187
32
11
33
22
1.90
22248813--22248837
13
1.9
13
100
0
50
72
0
0
28
0.86
22248839--22248895
21
2.6
22
83
8
64
57
1
1
38
1.19
22248839--22248895
22
2.6
22
83
8
64
57
1
1
38
1.19
22250676--22250723
25
2.0
24
84
12
62
81
6
10
2
0.95
22250676--22250721
22
2.0
25
87
12
71
80
6
10
2
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127